Wall clock time and date at job start Tue Mar 31 2020 09:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21534 * 120.00165 * 0.02562 * 17 16 14 19 19 C 1.47999 * 120.00123 * 179.97438 * 17 16 14 20 20 C 1.39901 * 120.93883 * 0.02562 * 19 17 16 21 21 C 1.38040 * 119.03369 * 179.97438 * 20 19 17 22 22 N 1.31862 * 120.98455 * 359.97438 * 21 20 19 23 23 C 1.31726 * 122.09267 * 0.02562 * 22 21 20 24 24 C 1.38540 * 120.84766 * 359.73240 * 23 22 21 25 25 F 1.35098 * 120.54278 * 180.28695 * 24 23 22 26 26 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 27 27 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 28 28 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 29 29 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 30 30 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 31 31 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 32 32 H 1.09001 * 110.24686 * 29.56772 * 12 11 10 33 33 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 34 34 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 35 35 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 36 36 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 37 37 H 1.07995 * 120.48513 * 359.94880 * 20 19 17 38 38 H 1.07999 * 119.51116 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.58051 * 180.02562 * 23 22 21 40 40 H 1.09007 * 108.15424 * 33.30548 * 26 9 7 41 41 H 1.08997 * 108.16212 * 149.87211 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9480 -5.3015 -1.4250 19 6 3.7978 -4.1948 -3.4789 20 6 3.0557 -3.3590 -4.3203 21 6 3.5679 -3.0300 -5.5592 22 7 4.7387 -3.4906 -5.9539 23 6 5.4719 -4.2798 -5.1958 24 6 5.0384 -4.6575 -3.9353 25 9 5.7980 -5.4625 -3.1607 26 6 2.1839 -3.5380 0.6659 27 1 -0.4850 -0.8349 -0.0928 28 1 0.7234 -2.4530 2.7206 29 1 0.2089 -0.9925 1.8346 30 1 -1.5417 -2.6551 1.9211 31 1 -0.9968 -2.3364 0.2689 32 1 0.2635 -4.6388 1.7241 33 1 -1.4100 -4.8200 1.1209 34 1 -0.3695 -5.2943 -0.8472 35 1 -0.2633 -3.5249 -0.9671 36 1 1.5691 -3.5331 -2.2918 37 1 2.0958 -2.9771 -4.0053 38 1 3.0016 -2.3850 -6.2148 39 1 6.4254 -4.6333 -5.5596 40 1 3.2404 -3.3972 0.4372 41 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034137607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:22 Heat of formation + Delta-G solvation = -7.996586 kcal Electronic energy + Delta-G solvation = -26199.186399 eV Core-core repulsion = 22415.833935 eV Total energy + Delta-G solvation = -3783.352465 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.95372 -40.48037 -39.28356 -37.94223 -34.62366 -33.49589 -32.82635 -31.16481 -31.02145 -29.97482 -26.30255 -25.17280 -24.15545 -23.54531 -22.76304 -20.94177 -20.17966 -19.44369 -18.17449 -17.37333 -17.30186 -17.09402 -15.96729 -15.68295 -15.58274 -15.14363 -14.61866 -14.45404 -14.40778 -13.84518 -13.70041 -13.66513 -13.39746 -13.37263 -12.77004 -12.48685 -12.31495 -12.15795 -11.91478 -11.15420 -10.95334 -10.64654 -10.49839 -10.26831 -10.23823 -10.07567 -10.04538 -9.88050 -9.81081 -9.55903 -9.50717 -9.16041 -8.84094 -8.22663 -7.03876 -6.24547 -3.09352 0.46202 0.72148 2.92738 3.25421 3.45761 3.54475 3.62885 3.69672 3.82365 4.20809 4.45929 4.54255 4.55619 4.65593 5.06954 5.09813 5.18651 5.23494 5.32939 5.45062 5.57960 5.59315 5.66153 5.86056 5.90251 5.93295 6.17733 6.25570 6.29645 6.34357 6.51188 6.59738 6.61385 6.78516 6.83408 6.93045 7.17146 7.18875 7.54214 7.73958 7.93372 8.39176 8.45776 9.00022 9.78068 10.22975 11.05585 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.005317 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.935696 B = 5264.687825 C = 6459.935403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.014 4.014 3 Si 1.034 2.966 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.354 4.354 8 H 0.062 0.938 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.111 4.111 14 C 0.114 3.886 15 H 0.078 0.922 16 N -0.690 5.690 17 C 0.552 3.448 18 O -0.531 6.531 19 C -0.118 4.118 20 C -0.107 4.107 21 C 0.083 3.917 22 N -0.446 5.446 23 C 0.066 3.934 24 C 0.102 3.898 25 F -0.107 7.107 26 C 0.153 3.847 27 H 0.273 0.727 28 H 0.024 0.976 29 H 0.095 0.905 30 H 0.040 0.960 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.151 0.849 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.041 0.959 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 -8.350 -7.364 11.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.216 4.216 3 Si 0.864 3.136 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.482 4.482 8 H 0.080 0.920 9 N -0.307 5.307 10 C 0.005 3.995 11 C -0.175 4.175 12 C -0.148 4.148 13 C -0.149 4.149 14 C 0.006 3.994 15 H 0.096 0.904 16 N -0.340 5.340 17 C 0.336 3.664 18 O -0.409 6.409 19 C -0.130 4.130 20 C -0.128 4.128 21 C -0.073 4.073 22 N -0.154 5.154 23 C -0.093 4.093 24 C 0.079 3.921 25 F -0.085 7.085 26 C 0.022 3.978 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.169 0.831 38 H 0.187 0.813 39 H 0.189 0.811 40 H 0.060 0.940 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.234 -6.965 -7.521 10.492 hybrid contribution -0.248 -1.672 0.446 1.748 sum 1.986 -8.638 -7.075 11.341 Atomic orbital electron populations 1.70882 1.07167 1.30584 1.45470 1.25388 0.95768 1.00556 0.99931 0.83980 0.75720 0.77507 0.76395 1.21300 1.22222 1.22295 1.19868 1.09260 0.92506 1.26562 0.91965 1.44360 1.38958 1.04947 1.42444 1.20601 0.86832 1.01595 0.90455 1.21092 0.99444 0.94504 1.02410 1.20942 0.99910 0.97509 0.96471 1.21670 0.93934 1.01220 0.98116 1.22889 0.93763 0.99602 0.83115 0.90422 1.45889 1.19286 1.49717 1.19103 1.17806 0.82196 0.81211 0.85146 1.90806 1.56861 1.37126 1.56077 1.20762 0.95028 1.00330 0.96912 1.22424 1.00958 0.95233 0.94154 1.22805 0.92075 0.98006 0.94456 1.67574 1.05831 1.07677 1.34351 1.22934 1.00849 0.96407 0.89137 1.18901 0.89678 0.92660 0.90839 1.91607 1.73652 1.69392 1.73876 1.20624 0.96261 0.86245 0.94678 0.91394 0.95766 0.88724 0.94109 0.91027 0.91689 0.92515 0.93525 0.90947 0.76529 0.83147 0.81270 0.81065 0.94032 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.19 11.99 55.49 0.67 -23.53 16 2 C -0.01 -0.36 4.53 -17.43 -0.08 -0.44 16 3 Si 1.03 24.05 30.06 -169.99 -5.11 18.94 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.35 -9.05 9.46 -15.06 -0.14 -9.19 16 8 H 0.06 1.67 8.05 -52.48 -0.42 1.25 16 9 N -0.59 -13.33 2.62 -175.40 -0.46 -13.79 16 10 C 0.13 2.77 5.22 -5.20 -0.03 2.74 16 11 C -0.14 -2.50 4.96 -30.18 -0.15 -2.65 16 12 C -0.11 -1.73 5.76 -28.40 -0.16 -1.90 16 13 C -0.11 -1.77 5.23 -27.19 -0.14 -1.91 16 14 C 0.11 1.99 2.91 -66.23 -0.19 1.80 16 15 H 0.08 1.37 7.57 -51.93 -0.39 0.97 16 16 N -0.69 -11.58 5.04 -53.05 -0.27 -11.85 16 17 C 0.55 9.78 7.61 -12.26 -0.09 9.69 16 18 O -0.53 -11.08 15.14 5.34 0.08 -10.99 16 19 C -0.12 -1.78 5.91 -104.59 -0.62 -2.39 16 20 C -0.11 -1.30 9.61 -39.03 -0.38 -1.68 16 21 C 0.08 0.91 11.17 -17.61 -0.20 0.71 16 22 N -0.45 -5.43 10.33 -13.24 -0.14 -5.56 16 23 C 0.07 0.78 11.17 -17.49 -0.20 0.59 16 24 C 0.10 1.47 7.33 -38.79 -0.28 1.19 16 25 F -0.11 -1.72 15.72 2.25 0.04 -1.69 16 26 C 0.15 3.12 4.75 -4.93 -0.02 3.10 16 27 H 0.27 7.10 4.95 -40.82 -0.20 6.89 16 28 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.09 2.32 5.61 -51.93 -0.29 2.03 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.48 4.65 -51.93 -0.24 1.24 16 32 H 0.06 1.03 6.28 -51.93 -0.33 0.70 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.07 1.28 6.58 -51.93 -0.34 0.94 16 36 H 0.40 6.17 6.58 -40.82 -0.27 5.91 16 37 H 0.15 1.59 6.54 -52.49 -0.34 1.25 16 38 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.04 0.95 7.81 -51.93 -0.41 0.55 16 41 H 0.04 0.78 6.89 -51.93 -0.36 0.42 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -30.14 328.01 -7.86 -38.00 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.92 Total: 5.88 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.68 Total: -0.35 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.20 Total: -54.73 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.11 Total: 18.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.14 -7.86 -38.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034137607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.999 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds