Wall clock time and date at job start Tue Mar 31 2020 09:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21534 * 120.00165 * 0.02562 * 17 16 14 19 19 C 1.47999 * 120.00123 * 179.97438 * 17 16 14 20 20 C 1.39901 * 120.93883 * 0.02562 * 19 17 16 21 21 C 1.38040 * 119.03369 * 179.97438 * 20 19 17 22 22 N 1.31862 * 120.98455 * 359.97438 * 21 20 19 23 23 C 1.31726 * 122.09267 * 0.02562 * 22 21 20 24 24 C 1.38540 * 120.84766 * 359.73240 * 23 22 21 25 25 F 1.35098 * 120.54278 * 180.28695 * 24 23 22 26 26 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 27 27 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 28 28 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 29 29 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 30 30 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 31 31 H 1.08992 * 108.52164 * 297.32809 * 11 10 9 32 32 H 1.09001 * 110.24686 * 29.56772 * 12 11 10 33 33 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 34 34 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 35 35 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 36 36 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 37 37 H 1.07995 * 120.48513 * 359.94880 * 20 19 17 38 38 H 1.07999 * 119.51116 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.58051 * 180.02562 * 23 22 21 40 40 H 1.09007 * 108.15424 * 33.30548 * 26 9 7 41 41 H 1.08997 * 108.16212 * 149.87211 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9480 -5.3015 -1.4250 19 6 3.7978 -4.1948 -3.4789 20 6 3.0557 -3.3590 -4.3203 21 6 3.5679 -3.0300 -5.5592 22 7 4.7387 -3.4906 -5.9539 23 6 5.4719 -4.2798 -5.1958 24 6 5.0384 -4.6575 -3.9353 25 9 5.7980 -5.4625 -3.1607 26 6 2.1839 -3.5380 0.6659 27 1 -0.4850 -0.8349 -0.0928 28 1 0.7234 -2.4530 2.7206 29 1 0.2089 -0.9925 1.8346 30 1 -1.5417 -2.6551 1.9211 31 1 -0.9968 -2.3364 0.2689 32 1 0.2635 -4.6388 1.7241 33 1 -1.4100 -4.8200 1.1209 34 1 -0.3695 -5.2943 -0.8472 35 1 -0.2633 -3.5249 -0.9671 36 1 1.5691 -3.5331 -2.2918 37 1 2.0958 -2.9771 -4.0053 38 1 3.0016 -2.3850 -6.2148 39 1 6.4254 -4.6333 -5.5596 40 1 3.2404 -3.3972 0.4372 41 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034137607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:21 Heat of formation + Delta-G solvation = -26.558128 kcal Electronic energy + Delta-G solvation = -26199.991288 eV Core-core repulsion = 22415.833935 eV Total energy + Delta-G solvation = -3784.157353 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.10002 -41.64247 -40.57986 -39.45581 -36.20706 -35.03792 -34.00617 -32.92433 -32.01844 -31.46959 -27.95464 -26.52462 -25.49147 -24.78095 -24.26675 -22.41030 -21.58631 -20.97724 -19.36476 -19.04750 -18.41935 -18.37226 -17.14907 -17.09151 -16.86320 -16.54723 -16.18804 -15.94634 -15.56297 -15.43466 -15.17426 -15.02022 -14.60231 -14.49093 -14.33389 -13.99067 -13.80365 -13.48153 -13.21081 -12.78431 -12.56692 -12.46583 -12.20249 -11.94449 -11.77775 -11.58095 -11.44991 -11.29249 -11.18575 -11.14308 -10.72790 -10.42180 -10.15020 -10.04548 -8.87875 -8.27063 -5.07555 -0.63739 -0.23279 1.58016 1.64214 1.67883 1.83449 1.97737 2.55358 2.66046 2.80376 3.13528 3.31181 3.37299 3.44215 3.52222 3.62981 3.78201 3.99130 4.19641 4.24146 4.35375 4.40290 4.44085 4.51731 4.61722 4.66784 4.70886 4.73112 4.91642 5.04864 5.10352 5.13841 5.27480 5.38003 5.39812 5.48255 5.52261 5.62560 5.91171 6.38413 6.50114 6.59750 7.02397 7.09287 7.86391 8.31696 9.05620 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.005317 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.935696 B = 5264.687825 C = 6459.935403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.050 4.050 3 Si 1.074 2.926 4 H -0.292 1.292 5 H -0.284 1.284 6 H -0.298 1.298 7 C -0.352 4.352 8 H 0.042 0.958 9 N -0.597 5.597 10 C 0.132 3.868 11 C -0.128 4.128 12 C -0.103 4.103 13 C -0.102 4.102 14 C 0.120 3.880 15 H 0.080 0.920 16 N -0.686 5.686 17 C 0.548 3.452 18 O -0.570 6.570 19 C -0.140 4.140 20 C -0.104 4.104 21 C 0.094 3.906 22 N -0.452 5.452 23 C 0.079 3.921 24 C 0.079 3.921 25 F -0.124 7.124 26 C 0.157 3.843 27 H 0.272 0.728 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.406 0.594 37 H 0.165 0.835 38 H 0.207 0.793 39 H 0.202 0.798 40 H 0.007 0.993 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -8.726 -8.643 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.250 4.250 3 Si 0.903 3.097 4 H -0.218 1.218 5 H -0.210 1.210 6 H -0.226 1.226 7 C -0.481 4.481 8 H 0.060 0.940 9 N -0.319 5.319 10 C 0.008 3.992 11 C -0.167 4.167 12 C -0.141 4.141 13 C -0.140 4.140 14 C 0.013 3.987 15 H 0.098 0.902 16 N -0.335 5.335 17 C 0.335 3.665 18 O -0.450 6.450 19 C -0.151 4.151 20 C -0.124 4.124 21 C -0.062 4.062 22 N -0.161 5.161 23 C -0.080 4.080 24 C 0.056 3.944 25 F -0.102 7.102 26 C 0.027 3.973 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.243 0.757 37 H 0.182 0.818 38 H 0.223 0.777 39 H 0.218 0.782 40 H 0.026 0.974 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.517 -7.352 -8.816 11.579 hybrid contribution 0.005 -1.556 0.843 1.770 sum 1.522 -8.908 -7.973 12.052 Atomic orbital electron populations 1.70909 1.07551 1.30769 1.47106 1.26127 0.96010 1.02472 1.00345 0.83385 0.74777 0.75006 0.76570 1.21813 1.21023 1.22551 1.19800 1.08213 0.93660 1.26394 0.93960 1.44373 1.39768 1.05333 1.42433 1.20548 0.87599 1.00195 0.90823 1.20931 0.98379 0.96058 1.01314 1.20936 1.01500 0.95514 0.96108 1.21596 0.92176 1.01766 0.98443 1.22682 0.95026 0.98494 0.82503 0.90189 1.45850 1.19213 1.49576 1.18897 1.18267 0.81858 0.80413 0.85995 1.90771 1.57839 1.38916 1.57509 1.20717 0.96106 1.02163 0.96155 1.22613 1.01216 0.94384 0.94231 1.23402 0.91614 0.97060 0.94092 1.67713 1.06313 1.07753 1.34273 1.23348 1.01590 0.95258 0.87760 1.19212 0.89779 0.93513 0.91854 1.91558 1.74058 1.70073 1.74534 1.20589 0.94345 0.86101 0.96260 0.91484 0.94660 0.91995 0.92553 0.93209 0.91559 0.89356 0.90696 0.92649 0.75740 0.81790 0.77663 0.78156 0.97430 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.85 11.99 21.65 0.26 -49.59 16 2 C -0.05 -2.61 4.53 84.86 0.38 -2.23 16 3 Si 1.07 49.05 30.06 68.60 2.06 51.11 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.35 -18.24 9.46 84.04 0.80 -17.44 16 8 H 0.04 2.33 8.05 -2.91 -0.02 2.30 16 9 N -0.60 -27.39 2.62 -708.84 -1.86 -29.25 16 10 C 0.13 5.63 5.22 83.58 0.44 6.07 16 11 C -0.13 -4.55 4.96 28.36 0.14 -4.41 16 12 C -0.10 -2.95 5.76 29.51 0.17 -2.78 16 13 C -0.10 -3.03 5.23 30.30 0.16 -2.87 16 14 C 0.12 4.14 2.91 46.09 0.13 4.28 16 15 H 0.08 2.76 7.57 -2.38 -0.02 2.74 16 16 N -0.69 -22.97 5.04 -440.02 -2.22 -25.19 16 17 C 0.55 19.76 7.61 86.83 0.66 20.42 16 18 O -0.57 -24.51 15.14 -3.82 -0.06 -24.57 16 19 C -0.14 -4.16 5.91 -19.85 -0.12 -4.28 16 20 C -0.10 -2.36 9.61 22.63 0.22 -2.15 16 21 C 0.09 1.80 11.17 84.64 0.95 2.75 16 22 N -0.45 -9.82 10.33 -195.81 -2.02 -11.85 16 23 C 0.08 1.74 11.17 84.78 0.95 2.69 16 24 C 0.08 2.26 7.33 22.78 0.17 2.43 16 25 F -0.12 -4.08 15.72 44.97 0.71 -3.37 16 26 C 0.16 6.46 4.75 87.42 0.41 6.87 16 27 H 0.27 14.29 4.95 -92.71 -0.46 13.83 16 28 H 0.04 1.40 8.13 -2.39 -0.02 1.38 16 29 H 0.06 3.07 5.61 -2.38 -0.01 3.06 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 2.02 4.65 -2.39 -0.01 2.01 16 32 H 0.07 1.92 6.28 -2.39 -0.01 1.90 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.05 1.88 6.58 -2.39 -0.02 1.86 16 36 H 0.41 12.39 6.58 -92.71 -0.61 11.78 16 37 H 0.16 3.19 6.54 -2.91 -0.02 3.18 16 38 H 0.21 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.20 3.06 8.06 -2.91 -0.02 3.03 16 40 H 0.01 0.35 7.81 -2.38 -0.02 0.33 16 41 H 0.05 1.93 6.89 -2.39 -0.02 1.91 16 Total: -1.00 -66.45 328.01 3.10 -63.35 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.78 Total: 20.02 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 5.45 Total: 9.33 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -5.84 Total: -115.87 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.06 Total: -24.57 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.71 Total: -3.37 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.06 Total: 51.11 kcal Total: -66.45 3.10 -63.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034137607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.795 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds