Wall clock time and date at job start Tue Mar 31 2020 09:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38264 * 119.98787 * 2 1 4 4 C 1.38187 * 120.01411 * 179.72789 * 3 2 1 5 5 C 1.50706 * 120.00808 * 180.24690 * 4 3 2 6 6 C 1.38371 * 119.98565 * 0.53640 * 4 3 2 7 7 Cl 1.73606 * 120.01529 * 179.70930 * 6 4 3 8 8 C 1.38325 * 119.97377 * 359.73250 * 6 4 3 9 9 C 1.50705 * 120.00837 * 180.02562 * 8 6 4 10 10 N 1.46902 * 109.46677 * 284.97904 * 9 8 6 11 11 C 1.46851 * 110.99926 * 294.20462 * 10 9 8 12 12 C 1.53043 * 109.52041 * 174.16294 * 11 10 9 13 13 C 1.53119 * 109.27544 * 59.18318 * 12 11 10 14 14 C 1.53115 * 109.16130 * 302.33892 * 13 12 11 15 15 H 1.08997 * 109.54115 * 297.69815 * 14 13 12 16 16 C 1.50708 * 109.50226 * 177.59479 * 14 13 12 17 17 H 1.07997 * 120.00147 * 245.63286 * 16 14 13 18 18 C 1.37883 * 119.99315 * 65.63466 * 16 14 13 19 19 N 1.31512 * 120.00253 * 9.55376 * 18 16 14 20 20 Si 1.86805 * 119.99601 * 189.55295 * 18 16 14 21 21 H 1.48494 * 109.46895 * 94.98837 * 20 18 16 22 22 H 1.48499 * 109.47073 * 214.99268 * 20 18 16 23 23 H 1.48499 * 109.46924 * 334.99203 * 20 18 16 24 24 C 1.46848 * 110.99739 * 169.99983 * 10 9 8 25 25 C 1.38223 * 119.98927 * 180.26347 * 2 1 3 26 26 H 1.09002 * 109.47254 * 269.73145 * 1 2 3 27 27 H 1.09003 * 109.46817 * 149.73170 * 1 2 3 28 28 H 1.09002 * 109.47181 * 29.73533 * 1 2 3 29 29 H 1.08000 * 119.99111 * 359.97438 * 3 2 1 30 30 H 1.08993 * 109.46675 * 270.29306 * 5 4 3 31 31 H 1.09003 * 109.46662 * 30.29221 * 5 4 3 32 32 H 1.08996 * 109.47101 * 150.29144 * 5 4 3 33 33 H 1.09005 * 109.47173 * 44.97299 * 9 8 6 34 34 H 1.09000 * 109.47293 * 164.98174 * 9 8 6 35 35 H 1.08994 * 109.46457 * 294.17998 * 11 10 9 36 36 H 1.08997 * 109.46138 * 54.14870 * 11 10 9 37 37 H 1.08995 * 109.50438 * 299.24300 * 12 11 10 38 38 H 1.09000 * 109.49932 * 179.11916 * 12 11 10 39 39 H 1.09008 * 109.51951 * 182.43531 * 13 12 11 40 40 H 1.08998 * 109.52465 * 62.25429 * 13 12 11 41 41 H 0.96996 * 119.99755 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.46771 * 305.85131 * 24 10 9 43 43 H 1.09003 * 109.46446 * 65.82176 * 24 10 9 44 44 H 1.08005 * 119.98924 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5799 1.1982 0.0057 5 6 4.3330 2.5036 0.0113 6 6 4.2721 0.0000 0.0002 7 17 6.0081 0.0000 -0.0003 8 6 3.5802 -1.1977 -0.0055 9 6 4.3332 -2.5031 -0.0109 10 7 4.8886 -2.7424 -1.3497 11 6 3.8185 -2.9462 -2.3346 12 6 4.4256 -3.0469 -3.7358 13 6 5.4119 -4.2174 -3.7765 14 6 6.4886 -4.0046 -2.7089 15 1 7.0457 -3.0941 -2.9293 16 6 7.4301 -5.1814 -2.7022 17 1 7.4773 -5.8303 -1.8403 18 6 8.2312 -5.4294 -3.7968 19 7 8.3152 -4.5429 -4.7645 20 14 9.1972 -7.0246 -3.9048 21 1 8.4235 -8.0194 -4.6902 22 1 10.4990 -6.7707 -4.5727 23 1 9.4368 -7.5517 -2.5374 24 6 5.8218 -3.8761 -1.3374 25 6 2.1979 -1.1972 -0.0055 26 1 -0.3634 -0.0048 1.0277 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3634 0.8924 -0.5097 29 1 1.6577 2.1327 -0.0004 30 1 4.5142 2.8228 -1.0150 31 1 3.7438 3.2607 0.5287 32 1 5.2856 2.3713 0.5242 33 1 5.1442 -2.4578 0.7160 34 1 3.6549 -3.3150 0.2515 35 1 3.2830 -3.8671 -2.1037 36 1 3.1264 -2.1049 -2.2982 37 1 4.9496 -2.1210 -3.9728 38 1 3.6326 -3.2138 -4.4648 39 1 5.8789 -4.2661 -4.7602 40 1 4.8808 -5.1483 -3.5779 41 1 8.8791 -4.7172 -5.5343 42 1 6.5847 -3.7103 -0.5768 43 1 5.2769 -4.7927 -1.1112 44 1 1.6575 -2.1323 -0.0094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237703421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:41 Heat of formation + Delta-G solvation = -3.534056 kcal Electronic energy + Delta-G solvation = -23397.066489 eV Core-core repulsion = 20145.784253 eV Total energy + Delta-G solvation = -3251.282236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.140 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.88007 -37.98606 -36.20299 -34.29978 -33.37082 -32.48718 -30.99737 -29.75410 -27.56695 -26.67181 -25.90703 -24.85508 -22.26517 -21.52569 -20.86636 -20.15175 -18.56371 -16.63279 -16.33777 -16.16835 -15.13445 -14.86147 -14.36214 -14.17236 -13.94857 -13.59646 -13.43550 -13.34264 -13.14251 -12.81818 -12.77288 -12.46090 -12.27418 -12.16902 -11.97315 -11.75570 -11.46082 -11.24241 -11.05528 -10.97631 -10.90656 -10.65422 -10.63832 -10.31394 -10.11338 -9.85828 -9.41194 -9.00184 -8.70871 -8.66663 -8.34309 -8.25459 -7.59684 -5.96242 -3.97574 1.18739 1.25476 2.46982 3.33261 3.40635 3.43313 3.53745 4.44202 4.58404 4.63897 4.68788 4.81847 5.13313 5.15370 5.35401 5.35921 5.40747 5.45205 5.46371 5.55684 5.67360 5.71127 5.74727 5.82221 5.87807 5.97844 6.08175 6.12411 6.26601 6.32766 6.38244 6.44525 6.50178 6.56766 6.72990 6.75818 6.82881 6.99424 7.23877 7.36425 7.70376 7.79085 7.83866 8.06167 8.17844 8.52634 9.07020 9.65083 11.12881 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.021779 B = 0.003757 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.348824 B = 7451.852478 C = 8057.077618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.117 4.117 4 C -0.078 4.078 5 C -0.117 4.117 6 C -0.019 4.019 7 Cl -0.050 7.050 8 C -0.053 4.053 9 C 0.090 3.910 10 N -0.524 5.524 11 C 0.064 3.936 12 C -0.116 4.116 13 C -0.104 4.104 14 C 0.055 3.945 15 H 0.042 0.958 16 C -0.516 4.516 17 H 0.053 0.947 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.885 3.115 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.071 3.929 25 C -0.113 4.113 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.021 0.979 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.259 0.741 42 H 0.060 0.940 43 H 0.017 0.983 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.166 11.834 10.067 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.079 4.079 5 C -0.174 4.174 6 C -0.046 4.046 7 Cl -0.021 7.021 8 C -0.054 4.054 9 C -0.038 4.038 10 N -0.248 5.248 11 C -0.064 4.064 12 C -0.153 4.153 13 C -0.142 4.142 14 C 0.036 3.964 15 H 0.060 0.940 16 C -0.555 4.555 17 H 0.071 0.929 18 C -0.136 4.136 19 N -0.523 5.523 20 Si 0.713 3.287 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.056 4.056 25 C -0.131 4.131 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.636 12.267 9.754 20.774 hybrid contribution 0.189 -1.681 0.028 1.692 sum -13.447 10.585 9.782 19.712 Atomic orbital electron populations 1.20768 0.91035 1.02833 1.02221 1.19883 0.96113 0.92938 0.99545 1.20762 0.92585 0.97698 1.02495 1.19738 0.93729 0.94283 1.00158 1.20842 1.00295 0.93321 1.02900 1.20643 0.85529 0.93634 1.04844 1.98381 1.08568 1.98642 1.96472 1.19747 0.93201 0.94397 0.98082 1.21038 0.97478 0.91827 0.93481 1.62011 1.16476 1.43232 1.03119 1.22024 0.92712 0.98176 0.93492 1.21638 0.98619 1.01158 0.93923 1.21589 0.95734 0.93976 1.02949 1.18660 0.92223 0.97760 0.87755 0.93954 1.21124 1.21508 1.11403 1.01479 0.92883 1.24918 0.96243 0.96266 0.96156 1.69983 1.39375 1.33371 1.09597 0.86697 0.79422 0.84455 0.78127 1.20823 1.21345 1.19950 1.22305 0.93345 0.88264 1.01685 1.20877 0.92742 0.97821 1.01691 0.91222 0.91462 0.91559 0.85691 0.90709 0.91509 0.90818 0.89733 0.94537 0.96094 0.92369 0.91998 0.93686 0.91025 0.94990 0.93125 0.92133 0.96478 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.08 -0.92 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.27 9.36 -39.59 -0.37 -1.64 16 4 C -0.08 -0.96 5.88 -104.59 -0.62 -1.58 16 5 C -0.12 -1.17 9.62 36.01 0.35 -0.83 16 6 C -0.02 -0.28 6.31 -39.50 -0.25 -0.53 16 7 Cl -0.05 -0.77 25.89 -51.86 -1.34 -2.11 16 8 C -0.05 -0.76 4.42 -104.59 -0.46 -1.22 16 9 C 0.09 1.40 4.43 -4.97 -0.02 1.38 16 10 N -0.52 -9.75 4.55 -236.10 -1.07 -10.82 16 11 C 0.06 1.14 5.30 -3.83 -0.02 1.12 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C -0.10 -2.47 5.09 -26.61 -0.14 -2.60 16 14 C 0.05 1.38 2.13 -91.69 -0.19 1.19 16 15 H 0.04 1.21 8.09 -51.93 -0.42 0.79 16 16 C -0.52 -14.28 8.48 -34.43 -0.29 -14.57 16 17 H 0.05 1.45 7.77 -52.49 -0.41 1.04 16 18 C 0.07 1.85 5.22 -17.82 -0.09 1.75 16 19 N -0.89 -25.74 12.19 55.43 0.68 -25.06 16 20 Si 0.88 21.46 29.55 -169.99 -5.02 16.44 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.07 1.51 4.68 -3.83 -0.02 1.49 16 25 C -0.11 -1.38 8.60 -39.59 -0.34 -1.73 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 33 H 0.08 1.33 7.43 -51.93 -0.39 0.94 16 34 H 0.04 0.54 7.93 -51.93 -0.41 0.12 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.97 6.55 -51.93 -0.34 0.63 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.88 6.99 -51.92 -0.36 1.52 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.06 1.30 8.02 -51.93 -0.42 0.88 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.12 1.37 8.00 -52.48 -0.42 0.95 16 LS Contribution 360.30 15.07 5.43 5.43 Total: -1.00 -29.15 360.30 -11.52 -40.67 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.30 Total: -2.29 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -2.88 Total: -22.25 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.40 Total: -35.88 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.34 Total: -2.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.15 -11.52 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237703421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.137 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds