Wall clock time and date at job start Tue Mar 31 2020 09:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 119.99727 * 2 1 4 4 H 1.08010 * 119.99816 * 203.98397 * 3 2 1 5 5 C 1.38814 * 120.00714 * 23.98223 * 3 2 1 6 6 N 1.31621 * 119.99132 * 10.54271 * 5 3 2 7 7 Si 1.86798 * 120.00431 * 190.54632 * 5 3 2 8 8 H 1.48504 * 109.46774 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47426 * 119.99732 * 7 5 3 10 10 H 1.48500 * 109.46692 * 239.99766 * 7 5 3 11 11 C 1.46499 * 120.00147 * 179.97438 * 2 1 3 12 12 H 1.08992 * 109.49802 * 179.97438 * 11 2 1 13 13 C 1.53046 * 109.49564 * 299.99854 * 11 2 1 14 14 C 1.53039 * 109.53870 * 181.31359 * 13 11 2 15 15 C 1.53193 * 109.31194 * 298.64072 * 14 13 11 16 16 N 1.46920 * 108.77938 * 54.63391 * 15 14 13 17 17 C 1.34776 * 120.63305 * 126.40907 * 16 15 14 18 18 O 1.21534 * 120.00269 * 177.08742 * 17 16 15 19 19 C 1.48000 * 119.99837 * 357.09614 * 17 16 15 20 20 C 1.39898 * 120.94051 * 33.20618 * 19 17 16 21 21 C 1.38045 * 119.03064 * 179.72801 * 20 19 17 22 22 N 1.31862 * 120.97905 * 0.56398 * 21 20 19 23 23 C 1.31721 * 122.09807 * 359.71090 * 22 21 20 24 24 C 1.38534 * 120.84453 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.53632 * 180.02562 * 24 23 22 26 26 C 1.46933 * 118.73653 * 306.39081 * 16 15 14 27 27 H 1.08998 * 109.47187 * 275.35351 * 1 2 3 28 28 H 1.09005 * 109.46863 * 35.34829 * 1 2 3 29 29 H 1.08994 * 109.46659 * 155.34974 * 1 2 3 30 30 H 0.96999 * 119.99442 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46298 * 301.34101 * 13 11 2 32 32 H 1.09003 * 109.45575 * 61.29519 * 13 11 2 33 33 H 1.08998 * 109.49639 * 58.58900 * 14 13 11 34 34 H 1.08997 * 109.49745 * 178.68412 * 14 13 11 35 35 H 1.09000 * 109.58375 * 294.83794 * 15 14 13 36 36 H 1.09002 * 109.70030 * 174.49390 * 15 14 13 37 37 H 1.07997 * 120.48471 * 0.02562 * 20 19 17 38 38 H 1.07997 * 119.50874 * 180.27142 * 21 20 19 39 39 H 1.07999 * 119.57573 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.58282 * 293.82208 * 26 16 15 41 41 H 1.09001 * 109.58401 * 173.39517 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1598 1.2263 -0.3802 5 6 1.5455 2.3362 0.4886 6 7 0.4039 2.2546 1.1385 7 14 2.3527 3.9999 0.2236 8 1 3.6198 3.8208 -0.5299 9 1 1.4367 4.8771 -0.5488 10 1 2.6435 4.6240 1.5393 11 6 2.1976 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8283 -2.0712 1.2504 14 6 2.6176 -3.3822 1.2686 15 6 2.2496 -4.2122 0.0347 16 7 2.4654 -3.3947 -1.1668 17 6 3.2359 -3.8469 -2.1759 18 8 3.3639 -3.1845 -3.1867 19 6 3.9260 -5.1504 -2.0531 20 6 3.3474 -6.2063 -1.3407 21 6 4.0231 -7.4071 -1.2560 22 7 5.2023 -7.5639 -1.8250 23 6 5.7876 -6.5965 -2.5007 24 6 5.1790 -5.3600 -2.6423 25 9 5.7848 -4.3723 -3.3370 26 6 1.8248 -2.0748 -1.2476 27 1 -0.3633 0.0959 1.0232 28 1 -0.3633 0.8383 -0.5946 29 1 -0.3632 -0.9340 -0.4286 30 1 -0.0184 3.0584 1.4797 31 1 2.0698 -1.4894 2.1400 32 1 0.7605 -2.2902 1.2388 33 1 3.6854 -3.1641 1.2551 34 1 2.3716 -3.9424 2.1706 35 1 1.2021 -4.5079 0.0924 36 1 2.8783 -5.1016 -0.0107 37 1 2.3839 -6.0854 -0.8680 38 1 3.5816 -8.2287 -0.7117 39 1 6.7540 -6.7697 -2.9507 40 1 0.7426 -2.1962 -1.2945 41 1 2.1751 -1.5526 -2.1379 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027349727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:50 Heat of formation + Delta-G solvation = 9.887242 kcal Electronic energy + Delta-G solvation = -25738.135570 eV Core-core repulsion = 21955.558606 eV Total energy + Delta-G solvation = -3782.576964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.16937 -41.00614 -39.49982 -37.52619 -35.32791 -33.37712 -32.15855 -31.43632 -31.22156 -28.83332 -26.29918 -26.02678 -24.32951 -24.14743 -23.20030 -21.74406 -20.44053 -18.96566 -17.99440 -17.76723 -17.35893 -16.79520 -16.33224 -15.92019 -15.44595 -15.19674 -14.94555 -14.60964 -14.13704 -13.96124 -13.81865 -13.70822 -13.62736 -13.31890 -12.78100 -12.68693 -12.49813 -12.27124 -12.01622 -11.11218 -11.03777 -10.88075 -10.74544 -10.49160 -10.44633 -10.37476 -10.18891 -10.13829 -9.92869 -9.83587 -9.57076 -9.31613 -8.68679 -8.46128 -6.78397 -5.74834 -3.23401 0.28810 0.47802 2.59545 2.86167 3.28644 3.37116 3.44721 3.47401 3.60965 3.97232 4.07704 4.27947 4.36901 4.47006 4.79470 4.86630 5.06464 5.12952 5.23158 5.32568 5.36663 5.39982 5.45285 5.47200 5.68683 5.76279 5.89891 6.07257 6.11547 6.13453 6.29706 6.42930 6.52552 6.71298 6.86806 6.93324 7.33761 7.34630 7.37884 7.70720 7.79649 8.06421 8.37587 9.20820 9.82382 10.30878 11.29398 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.003626 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.144763 B = 7719.668281 C = 8369.383290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.074 3.926 16 N -0.591 5.591 17 C 0.552 3.448 18 O -0.520 6.520 19 C -0.115 4.115 20 C -0.129 4.129 21 C 0.082 3.918 22 N -0.446 5.446 23 C 0.072 3.928 24 C 0.101 3.899 25 F -0.109 7.109 26 C 0.097 3.903 27 H 0.033 0.967 28 H 0.041 0.959 29 H -0.002 1.002 30 H 0.252 0.748 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.068 0.932 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 -20.713 -1.561 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.172 4.172 14 C -0.171 4.171 15 C -0.048 4.048 16 N -0.323 5.323 17 C 0.338 3.662 18 O -0.396 6.396 19 C -0.127 4.127 20 C -0.149 4.149 21 C -0.074 4.074 22 N -0.154 5.154 23 C -0.087 4.087 24 C 0.078 3.922 25 F -0.087 7.087 26 C -0.027 4.027 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.191 0.809 40 H 0.087 0.913 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.160 -20.904 -1.985 21.623 hybrid contribution -0.082 1.996 -0.107 2.001 sum 5.078 -18.908 -2.092 19.689 Atomic orbital electron populations 1.20810 0.82556 0.95302 0.99609 1.43879 1.01834 0.99951 1.85699 1.19277 0.98903 0.85581 1.34788 0.91377 1.25042 0.97706 0.98595 0.98049 1.70066 1.18467 1.27264 1.39419 0.86168 0.78794 0.84136 0.77389 1.20253 1.21564 1.21694 1.20579 0.96554 0.86351 0.90566 0.91671 1.22140 0.99434 0.94626 1.01034 1.21942 1.01179 0.97519 0.96492 1.22715 1.01950 0.95051 0.85077 1.48065 1.47989 1.19274 1.17019 1.17922 0.79603 0.84691 0.83972 1.90846 1.62266 1.57458 1.29024 1.20670 0.95139 0.96812 1.00031 1.22811 1.02696 0.92571 0.96789 1.22851 0.90817 0.96479 0.97285 1.67581 1.10223 1.31392 1.06194 1.22967 1.00978 0.87006 0.97775 1.18883 0.91632 0.87537 0.94126 1.91619 1.81825 1.59746 1.75513 1.22548 0.97000 0.80672 1.02434 0.94895 0.93991 0.98370 0.93797 0.91306 0.92344 0.91766 0.91021 0.90696 0.88084 0.81536 0.81208 0.80872 0.91343 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 8.02 59.85 0.48 4.33 16 2 N -0.59 -14.50 2.81 -173.35 -0.49 -14.99 16 3 C -0.26 -7.02 9.58 -15.06 -0.14 -7.17 16 4 H 0.07 1.87 7.82 -52.48 -0.41 1.46 16 5 C 0.00 0.12 5.15 -17.43 -0.09 0.03 16 6 N -0.91 -26.08 10.63 55.49 0.59 -25.49 16 7 Si 0.91 21.97 29.57 -169.99 -5.03 16.94 16 8 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.17 3.37 2.74 -67.81 -0.19 3.18 16 12 H 0.07 1.40 7.87 -51.93 -0.41 0.99 16 13 C -0.13 -2.21 5.15 -26.69 -0.14 -2.35 16 14 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 15 C 0.07 0.79 5.02 -3.71 -0.02 0.77 16 16 N -0.59 -8.72 2.97 -173.83 -0.52 -9.24 16 17 C 0.55 8.77 7.40 -12.26 -0.09 8.68 16 18 O -0.52 -10.41 15.56 5.34 0.08 -10.32 16 19 C -0.11 -1.40 5.55 -104.60 -0.58 -1.98 16 20 C -0.13 -1.07 7.57 -39.03 -0.30 -1.37 16 21 C 0.08 0.60 11.17 -17.61 -0.20 0.41 16 22 N -0.45 -4.15 10.33 -13.24 -0.14 -4.29 16 23 C 0.07 0.68 11.17 -17.49 -0.20 0.49 16 24 C 0.10 1.23 7.29 -38.80 -0.28 0.94 16 25 F -0.11 -1.58 16.23 2.25 0.04 -1.54 16 26 C 0.10 1.73 5.78 -3.71 -0.02 1.71 16 27 H 0.03 0.85 7.31 -51.93 -0.38 0.47 16 28 H 0.04 1.09 7.36 -51.93 -0.38 0.71 16 29 H 0.00 -0.04 6.35 -51.93 -0.33 -0.37 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.83 3.46 -52.88 -0.18 0.65 16 37 H 0.17 1.01 5.41 -52.49 -0.28 0.72 16 38 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.07 1.20 6.50 -51.93 -0.34 0.86 16 41 H 0.09 1.90 7.02 -51.93 -0.36 1.54 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -32.95 330.92 -7.54 -40.49 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.15 Total: -2.46 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.92 Total: 5.91 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.55 Total: -54.00 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.95 -7.54 -40.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027349727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.378 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds