Wall clock time and date at job start Tue Mar 31 2020 09:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.52269 * 2 1 4 4 C 1.53192 * 109.49756 * 239.92011 * 2 1 3 5 5 N 1.46928 * 108.77613 * 185.41680 * 4 2 1 6 6 C 1.34769 * 120.62608 * 233.59116 * 5 4 2 7 7 O 1.21530 * 120.00950 * 355.77571 * 6 5 4 8 8 C 1.48007 * 119.99576 * 175.77980 * 6 5 4 9 9 C 1.39901 * 120.94243 * 53.67889 * 8 6 5 10 10 C 1.38035 * 119.03518 * 179.97438 * 9 8 6 11 11 N 1.31861 * 120.98138 * 0.02562 * 10 9 8 12 12 C 1.31717 * 122.09601 * 359.97438 * 11 10 9 13 13 C 1.38543 * 120.84759 * 359.75165 * 12 11 10 14 14 F 1.35093 * 120.53697 * 180.28213 * 13 12 11 15 15 C 1.46923 * 118.73773 * 53.60495 * 5 4 2 16 16 C 1.53189 * 108.77836 * 306.39629 * 15 5 4 17 17 C 1.53039 * 109.49198 * 120.08433 * 2 1 3 18 18 H 1.08996 * 109.46662 * 61.31145 * 17 2 1 19 19 N 1.46494 * 109.46282 * 301.33365 * 17 2 1 20 20 C 1.36942 * 120.00377 * 155.00266 * 19 17 2 21 21 H 1.07996 * 119.99352 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00222 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99923 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99833 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47018 * 180.02562 * 24 22 20 26 26 H 1.48499 * 109.47295 * 300.00307 * 24 22 20 27 27 H 1.48495 * 109.46911 * 60.00231 * 24 22 20 28 28 H 1.08997 * 109.47241 * 299.91397 * 1 2 3 29 29 H 1.08997 * 109.47050 * 59.91643 * 1 2 3 30 30 H 1.09006 * 109.47093 * 179.91538 * 1 2 3 31 31 H 1.09005 * 109.58697 * 305.20567 * 4 2 1 32 32 H 1.09004 * 109.58917 * 65.48084 * 4 2 1 33 33 H 1.08004 * 120.48116 * 359.95325 * 9 8 6 34 34 H 1.08000 * 119.50783 * 179.97438 * 10 9 8 35 35 H 1.08007 * 119.57584 * 180.02562 * 12 11 10 36 36 H 1.09004 * 109.58369 * 66.18205 * 15 5 4 37 37 H 1.09005 * 109.58484 * 186.46139 * 15 5 4 38 38 H 1.09002 * 109.49509 * 294.68414 * 16 15 5 39 39 H 1.09004 * 109.50010 * 174.58772 * 16 15 5 40 40 H 0.97007 * 120.00060 * 335.00414 * 19 17 2 41 41 H 0.97002 * 119.99769 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8292 -1.1696 6 6 4.2811 -0.3864 -2.1782 7 8 3.7713 0.0350 -3.1978 8 6 5.7548 -0.4133 -2.0443 9 6 6.4248 -1.5936 -1.7048 10 6 7.8003 -1.5742 -1.5910 11 7 8.4828 -0.4648 -1.7965 12 6 7.8949 0.6692 -2.1178 13 6 6.5185 0.7407 -2.2593 14 9 5.9226 1.9058 -2.5946 15 6 4.1052 -1.4267 0.0308 16 6 3.5708 -0.6951 1.2660 17 6 2.0407 -0.7232 1.2483 18 1 1.6968 -1.7574 1.2352 19 7 1.5265 -0.0531 2.4453 20 6 1.3963 -0.7494 3.6172 21 1 1.6731 -1.7924 3.6591 22 6 0.9095 -0.1143 4.7515 23 7 0.5726 1.1570 4.7005 24 14 0.7313 -1.0644 6.3500 25 1 0.1937 -0.1656 7.4027 26 1 -0.2010 -2.2025 6.1481 27 1 2.0589 -1.5805 6.7696 28 1 -0.3633 0.5125 0.8907 29 1 -0.3633 0.5151 -0.8892 30 1 -0.3633 -1.0277 -0.0015 31 1 1.6052 -1.7216 -1.2981 32 1 1.7616 -0.1592 -2.1391 33 1 5.8737 -2.5067 -1.5339 34 1 8.3252 -2.4809 -1.3289 35 1 8.4938 1.5537 -2.2774 36 1 3.8374 -2.4819 0.0867 37 1 5.1898 -1.3269 -0.0149 38 1 3.9159 0.3387 1.2541 39 1 3.9333 -1.1898 2.1671 40 1 1.2781 0.8839 2.4077 41 1 0.2321 1.6007 5.4930 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035961069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:47 Heat of formation + Delta-G solvation = -26.946693 kcal Electronic energy + Delta-G solvation = -25594.643139 eV Core-core repulsion = 21810.468937 eV Total energy + Delta-G solvation = -3784.174203 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.23734 -40.94116 -39.62765 -37.75354 -34.82902 -33.47484 -32.40021 -31.56086 -31.28702 -29.41643 -26.88551 -25.59862 -24.42439 -23.79435 -22.80843 -21.75762 -20.49006 -19.44427 -17.95550 -17.70844 -17.48113 -17.14489 -16.53725 -15.92227 -15.51127 -14.99358 -14.96481 -14.68941 -14.25087 -13.99653 -13.90153 -13.70470 -13.65749 -13.39493 -13.10117 -12.53211 -12.44049 -12.34500 -11.86412 -11.68346 -11.27004 -10.98639 -10.87680 -10.74279 -10.54691 -10.49293 -10.28107 -10.18825 -9.84834 -9.73278 -9.68711 -9.36698 -8.95314 -8.66400 -7.02604 -5.82368 -3.11678 0.35748 0.49968 2.37623 2.78768 3.22980 3.39059 3.43904 3.45186 3.59631 3.97201 4.06152 4.29858 4.40037 4.52752 4.89883 4.94453 5.08313 5.15410 5.23551 5.25040 5.34228 5.39473 5.44219 5.48391 5.60902 5.68494 5.84979 5.99049 6.05154 6.12106 6.21957 6.26665 6.36104 6.41347 6.52656 6.72209 6.84781 6.96710 7.24508 7.35995 7.62780 7.91114 8.35554 9.47032 10.03759 10.38577 11.39932 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.003721 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.562898 B = 7523.791945 C = 8216.487873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.070 0.930 4 C 0.121 3.879 5 N -0.593 5.593 6 C 0.559 3.441 7 O -0.527 6.527 8 C -0.110 4.110 9 C -0.115 4.115 10 C 0.086 3.914 11 N -0.447 5.447 12 C 0.077 3.923 13 C 0.093 3.907 14 F -0.114 7.114 15 C 0.097 3.903 16 C -0.152 4.152 17 C 0.184 3.816 18 H 0.049 0.951 19 N -0.720 5.720 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.010 4.010 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.286 1.286 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.153 0.847 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.384 0.616 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.865 -5.787 -13.824 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.324 5.324 6 C 0.345 3.655 7 O -0.404 6.404 8 C -0.122 4.122 9 C -0.135 4.135 10 C -0.070 4.070 11 N -0.155 5.155 12 C -0.083 4.083 13 C 0.071 3.929 14 F -0.092 7.092 15 C -0.026 4.026 16 C -0.194 4.194 17 C 0.074 3.926 18 H 0.067 0.933 19 N -0.360 5.360 20 C -0.373 4.373 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.213 1.213 27 H -0.213 1.213 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.170 0.830 34 H 0.188 0.812 35 H 0.192 0.808 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.218 0.782 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.406 -5.661 -14.120 19.630 hybrid contribution -1.128 0.061 0.966 1.486 sum 11.278 -5.601 -13.155 18.210 Atomic orbital electron populations 1.21656 0.93841 1.01855 1.01995 1.21760 0.96792 1.00094 0.94443 0.91172 1.21805 0.77401 1.01269 0.99675 1.48079 1.07429 1.59261 1.17656 1.17948 0.85399 0.78376 0.83794 1.90813 1.74302 1.46654 1.28600 1.20544 0.95240 0.94275 1.02147 1.22349 0.96008 0.97778 0.97400 1.22826 0.90808 0.96830 0.96513 1.67596 1.40168 0.98540 1.09168 1.22963 0.89666 0.97749 0.97900 1.18837 0.92220 0.81942 0.99944 1.91593 1.83907 1.44746 1.89004 1.22164 0.98046 0.97614 0.84741 1.22711 1.00561 1.00424 0.95660 1.20189 0.90202 0.95767 0.86480 0.93282 1.42397 1.76447 1.11450 1.05719 1.19161 1.36317 0.94094 0.87703 0.91269 1.24729 1.01907 0.95988 0.98047 1.69647 1.49718 1.09498 1.29063 0.86299 0.77747 0.78737 0.83565 1.21714 1.21268 1.21303 0.90625 0.93734 0.92960 0.91051 0.89161 0.82963 0.81167 0.80839 0.90822 0.90211 0.92203 0.90320 0.78175 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.03 37.16 0.34 -1.80 16 2 C -0.11 -1.77 2.46 -90.50 -0.22 -1.99 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 4 C 0.12 1.68 5.70 -3.71 -0.02 1.66 16 5 N -0.59 -8.07 2.97 -173.82 -0.52 -8.59 16 6 C 0.56 8.20 7.02 -12.26 -0.09 8.12 16 7 O -0.53 -9.43 16.36 5.34 0.09 -9.34 16 8 C -0.11 -1.33 4.93 -104.59 -0.52 -1.85 16 9 C -0.12 -1.01 7.54 -39.03 -0.29 -1.30 16 10 C 0.09 0.69 11.17 -17.61 -0.20 0.49 16 11 N -0.45 -4.41 10.33 -13.24 -0.14 -4.54 16 12 C 0.08 0.75 11.17 -17.49 -0.20 0.56 16 13 C 0.09 1.13 7.33 -38.79 -0.28 0.85 16 14 F -0.11 -1.60 16.79 2.25 0.04 -1.56 16 15 C 0.10 1.18 5.57 -3.71 -0.02 1.16 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.18 3.34 2.19 -67.89 -0.15 3.19 16 18 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 19 N -0.72 -16.85 4.41 -53.39 -0.24 -17.08 16 20 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 21 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 24 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.32 7.04 -51.93 -0.37 0.95 16 33 H 0.15 0.98 7.38 -52.48 -0.39 0.60 16 34 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.84 4.69 -51.93 -0.24 0.59 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.38 9.78 7.50 -40.82 -0.31 9.48 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -31.85 341.28 -7.42 -39.27 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.46 Total: 7.00 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.05 Total: -0.37 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.16 Total: -56.76 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.85 -7.42 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035961069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.321 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds