Wall clock time and date at job start Tue Mar 31 2020 09:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.88432 * 2 1 4 4 C 1.54904 * 111.00392 * 236.07517 * 2 1 3 5 5 N 1.47428 * 104.83364 * 204.91537 * 4 2 1 6 6 C 1.36938 * 125.65113 * 204.17858 * 5 4 2 7 7 H 1.07992 * 120.00364 * 161.46652 * 6 5 4 8 8 C 1.38817 * 119.99454 * 341.46206 * 6 5 4 9 9 N 1.31618 * 119.99422 * 157.64618 * 8 6 5 10 10 Si 1.86797 * 120.00283 * 337.64192 * 8 6 5 11 11 H 1.48505 * 109.46972 * 84.54118 * 10 8 6 12 12 H 1.48500 * 109.46976 * 204.53562 * 10 8 6 13 13 H 1.48499 * 109.47333 * 324.53719 * 10 8 6 14 14 C 1.47017 * 108.69896 * 24.12890 * 5 4 2 15 15 C 1.54324 * 107.27525 * 358.94402 * 14 5 4 16 16 H 1.08995 * 110.72045 * 96.17006 * 15 14 5 17 17 C 1.52998 * 110.71832 * 219.44392 * 15 14 5 18 18 N 1.46502 * 109.47471 * 288.51656 * 17 15 14 19 19 C 1.34773 * 120.00402 * 180.02562 * 18 17 15 20 20 O 1.21522 * 120.00293 * 0.02562 * 19 18 17 21 21 C 1.48050 * 119.99960 * 180.02562 * 19 18 17 22 22 C 1.39383 * 119.69585 * 179.97438 * 21 19 18 23 23 C 1.38455 * 119.09534 * 179.97438 * 22 21 19 24 24 C 1.38898 * 118.47451 * 0.02562 * 23 22 21 25 25 F 1.35097 * 120.35736 * 180.02562 * 24 23 22 26 26 C 1.38879 * 119.29546 * 0.02562 * 24 23 22 27 27 N 1.31464 * 120.85689 * 359.71475 * 26 24 23 28 28 H 1.09003 * 109.47220 * 296.12262 * 1 2 3 29 29 H 1.09002 * 109.47200 * 56.11588 * 1 2 3 30 30 H 1.09001 * 109.47189 * 176.12008 * 1 2 3 31 31 H 1.09001 * 110.37180 * 323.75759 * 4 2 1 32 32 H 1.09009 * 110.36328 * 86.07903 * 4 2 1 33 33 H 0.97008 * 119.99862 * 180.02562 * 9 8 6 34 34 H 1.09007 * 109.88483 * 239.52097 * 14 5 4 35 35 H 1.09004 * 109.88094 * 118.35872 * 14 5 4 36 36 H 1.09005 * 109.47537 * 48.51979 * 17 15 14 37 37 H 1.08997 * 109.47438 * 168.52004 * 17 15 14 38 38 H 0.97002 * 119.99270 * 0.02562 * 18 17 15 39 39 H 1.07999 * 120.44672 * 359.97438 * 22 21 19 40 40 H 1.08003 * 120.76206 * 180.02562 * 23 22 21 41 41 H 1.07993 * 119.57217 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8071 -1.1999 5 7 3.4271 -1.2434 -0.7728 6 6 4.4645 -1.5657 -1.6065 7 1 5.4759 -1.5830 -1.2283 8 6 4.2160 -1.8704 -2.9379 9 7 5.1755 -1.7496 -3.8307 10 14 2.5200 -2.4519 -3.4621 11 1 1.6470 -1.2757 -3.7061 12 1 2.6341 -3.2507 -4.7088 13 1 1.9308 -3.2916 -2.3884 14 6 3.4674 -1.2738 0.6965 15 6 2.0861 -0.8075 1.2025 16 1 1.4468 -1.6627 1.4216 17 6 2.2349 0.0885 2.4338 18 7 2.6467 -0.7233 3.5817 19 6 2.8401 -0.1431 4.7827 20 8 2.6724 1.0533 4.9136 21 6 3.2568 -0.9635 5.9425 22 6 3.4555 -0.3569 7.1816 23 6 3.8447 -1.1360 8.2580 24 6 4.0231 -2.4990 8.0587 25 9 4.4018 -3.2948 9.0826 26 6 3.8080 -3.0350 6.7958 27 7 3.4339 -2.2708 5.7936 28 1 -0.3634 0.4525 0.9227 29 1 -0.3634 0.5729 -0.8531 30 1 -0.3633 -1.0253 -0.0695 31 1 1.4518 -1.6709 -1.4018 32 1 2.1559 -0.1727 -2.0836 33 1 5.0018 -1.9621 -4.7611 34 1 4.2426 -0.5993 1.0602 35 1 3.6650 -2.2890 1.0409 36 1 2.9888 0.8514 2.2391 37 1 1.2807 0.5681 2.6517 38 1 2.7802 -1.6784 3.4772 39 1 3.3080 0.7064 7.3003 40 1 4.0058 -0.6940 9.2302 41 1 3.9450 -4.0942 6.6359 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092560310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:30 Heat of formation + Delta-G solvation = -21.281021 kcal Electronic energy + Delta-G solvation = -24523.795847 eV Core-core repulsion = 20739.867326 eV Total energy + Delta-G solvation = -3783.928521 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.52468 -40.92027 -39.29478 -38.24628 -34.93844 -33.24062 -32.86718 -31.66040 -31.11656 -29.73832 -26.31082 -25.83162 -24.72409 -24.18723 -22.56231 -21.19820 -20.31479 -19.80203 -18.50524 -17.96800 -17.73973 -16.81165 -16.37239 -15.91289 -15.73903 -15.44712 -15.02191 -14.91260 -14.39702 -14.27180 -13.99786 -13.67073 -13.47287 -13.19356 -13.04510 -12.94968 -12.87843 -12.53558 -12.06937 -11.50676 -11.39580 -11.12737 -10.90861 -10.62477 -10.57949 -10.52161 -10.31549 -10.10347 -9.94775 -9.79623 -9.53014 -9.42907 -9.07124 -8.67031 -7.03061 -5.93622 -3.23747 0.03516 0.55356 2.36886 2.90575 3.35137 3.37568 3.42272 3.48401 3.50658 3.74053 4.17190 4.23812 4.39764 4.55613 4.79058 4.84273 4.96070 5.00366 5.13169 5.16897 5.31079 5.34785 5.43049 5.50683 5.61664 5.74221 5.89256 5.90816 5.99492 6.04181 6.08892 6.23365 6.31896 6.39255 6.53032 6.65128 6.76734 6.80761 7.05445 7.44995 7.72660 8.01643 8.32474 8.84861 9.70073 10.19142 11.22640 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.002948 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.838229 B = 9494.760409 C =10223.509559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.609 5.609 6 C -0.241 4.241 7 H 0.091 0.909 8 C 0.021 3.979 9 N -0.909 5.909 10 Si 0.883 3.117 11 H -0.285 1.285 12 H -0.303 1.303 13 H -0.277 1.277 14 C 0.140 3.860 15 C -0.112 4.112 16 H 0.082 0.918 17 C 0.130 3.870 18 N -0.702 5.702 19 C 0.570 3.430 20 O -0.535 6.535 21 C 0.071 3.929 22 C -0.083 4.083 23 C -0.116 4.116 24 C 0.068 3.932 25 F -0.125 7.125 26 C 0.078 3.922 27 N -0.429 5.429 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.059 0.941 33 H 0.263 0.737 34 H 0.035 0.965 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.160 0.840 40 H 0.156 0.844 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 0.502 23.858 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.101 0.899 4 C -0.009 4.009 5 N -0.336 5.336 6 C -0.368 4.368 7 H 0.109 0.891 8 C -0.177 4.177 9 N -0.553 5.553 10 Si 0.713 3.287 11 H -0.212 1.212 12 H -0.231 1.231 13 H -0.203 1.203 14 C 0.015 3.985 15 C -0.131 4.131 16 H 0.101 0.899 17 C 0.007 3.993 18 N -0.352 5.352 19 C 0.354 3.646 20 O -0.411 6.411 21 C -0.067 4.067 22 C -0.103 4.103 23 C -0.142 4.142 24 C 0.046 3.954 25 F -0.103 7.103 26 C -0.084 4.084 27 N -0.139 5.139 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.249 0.751 39 H 0.178 0.822 40 H 0.173 0.827 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.237 0.947 22.873 24.010 hybrid contribution -0.545 -0.810 0.585 1.138 sum -7.782 0.138 23.458 24.716 Atomic orbital electron populations 1.21734 0.94978 1.01786 1.01387 1.22310 0.94850 0.99531 0.94934 0.89898 1.22026 0.87294 0.95649 0.95897 1.44749 1.09915 1.78330 1.00577 1.18641 0.86672 1.41278 0.90253 0.89097 1.24996 0.96905 1.00225 0.95593 1.69849 1.33030 1.50750 1.01668 0.86969 0.85616 0.79170 0.76907 1.21157 1.23103 1.20276 1.21415 0.93368 0.98179 0.85580 1.22527 0.98906 0.98227 0.93479 0.89934 1.21522 1.00565 0.93655 0.83530 1.45914 1.67451 1.13251 1.08609 1.17686 0.77968 0.86565 0.82424 1.90802 1.51990 1.14047 1.84303 1.21345 1.00553 0.90308 0.94500 1.22070 0.94846 1.02532 0.90881 1.21701 0.99395 0.91839 1.01283 1.19086 1.00387 0.89498 0.86416 1.91557 1.88289 1.73131 1.57336 1.22987 0.97435 1.01327 0.86614 1.67640 1.08933 1.04946 1.32403 0.92735 0.92520 0.92704 0.95583 0.92286 0.92727 0.94748 0.95184 0.90636 0.91102 0.75070 0.82240 0.82678 0.80656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.31 37.16 0.35 -1.50 16 2 C -0.10 -1.55 3.09 -88.47 -0.27 -1.82 16 3 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 4 C 0.12 2.49 4.16 -2.53 -0.01 2.48 16 5 N -0.61 -14.63 3.21 -170.07 -0.55 -15.18 16 6 C -0.24 -6.88 10.57 -15.06 -0.16 -7.04 16 7 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 8 C 0.02 0.62 5.43 -17.43 -0.09 0.53 16 9 N -0.91 -28.22 13.97 55.49 0.78 -27.44 16 10 Si 0.88 22.63 24.27 -169.99 -4.13 18.50 16 11 H -0.28 -6.99 6.49 56.52 0.37 -6.62 16 12 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 13 H -0.28 -6.98 6.66 56.52 0.38 -6.60 16 14 C 0.14 2.68 6.75 -3.07 -0.02 2.66 16 15 C -0.11 -1.68 2.43 -88.79 -0.22 -1.89 16 16 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 17 C 0.13 1.73 5.02 -4.04 -0.02 1.71 16 18 N -0.70 -8.79 5.46 -61.19 -0.33 -9.12 16 19 C 0.57 7.42 7.81 -12.24 -0.10 7.33 16 20 O -0.53 -8.25 16.32 5.35 0.09 -8.17 16 21 C 0.07 0.77 6.75 -83.02 -0.56 0.21 16 22 C -0.08 -0.70 9.63 -39.08 -0.38 -1.08 16 23 C -0.12 -0.78 10.15 -39.26 -0.40 -1.18 16 24 C 0.07 0.51 7.36 -39.10 -0.29 0.23 16 25 F -0.12 -0.96 17.28 2.25 0.04 -0.92 16 26 C 0.08 0.63 11.17 -17.47 -0.20 0.43 16 27 N -0.43 -4.39 9.54 -9.74 -0.09 -4.48 16 28 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.71 8.07 -51.93 -0.42 0.30 16 31 H 0.03 0.58 5.42 -51.93 -0.28 0.30 16 32 H 0.06 1.36 6.63 -51.92 -0.34 1.02 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.03 0.67 7.68 -51.92 -0.40 0.27 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 37 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.41 4.83 7.79 -40.82 -0.32 4.52 16 39 H 0.16 1.22 7.64 -52.49 -0.40 0.82 16 40 H 0.16 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -33.22 342.14 -6.96 -40.19 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.56 Total: 0.42 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.36 Total: 1.05 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.20 Total: -56.22 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.92 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.13 Total: 18.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.22 -6.96 -40.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092560310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.907 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds