Wall clock time and date at job start Tue Mar 31 2020 09:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46796 * 2 1 4 4 H 1.09001 * 109.46864 * 176.51505 * 3 2 1 5 5 C 1.50708 * 109.47347 * 56.52255 * 3 2 1 6 6 H 1.07994 * 119.99858 * 239.99784 * 5 3 2 7 7 C 1.37877 * 119.99532 * 59.99288 * 5 3 2 8 8 N 1.31516 * 120.00824 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99625 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47067 * 60.00332 * 9 7 5 11 11 H 1.48499 * 109.46886 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47017 * 300.00539 * 9 7 5 13 13 N 1.46893 * 109.47586 * 296.51881 * 3 2 1 14 14 C 1.46896 * 111.00303 * 273.30657 * 13 3 2 15 15 H 1.09000 * 109.46885 * 15.66297 * 14 13 3 16 16 C 1.50691 * 109.47505 * 135.66627 * 14 13 3 17 17 C 1.38243 * 120.00148 * 39.72762 * 16 14 13 18 18 C 1.38234 * 119.99743 * 179.79248 * 17 16 14 19 19 C 1.38227 * 120.00531 * 0.43734 * 18 17 16 20 20 C 1.38239 * 120.00000 * 359.81412 * 19 18 17 21 21 C 1.38236 * 119.99730 * 359.97438 * 20 19 18 22 22 C 1.53009 * 109.46959 * 255.66574 * 14 13 3 23 23 H 1.09005 * 109.46870 * 179.97438 * 22 14 13 24 24 O 1.42896 * 109.47054 * 299.99943 * 22 14 13 25 25 C 1.50698 * 109.47065 * 60.00008 * 22 14 13 26 26 O 1.20824 * 119.99593 * 245.00154 * 25 22 14 27 27 O 1.34228 * 120.00363 * 64.99960 * 25 22 14 28 28 C 1.45196 * 117.00089 * 180.02562 * 27 25 22 29 29 H 1.09007 * 109.47062 * 180.31138 * 1 2 3 30 30 H 1.08991 * 109.47409 * 60.30500 * 1 2 3 31 31 H 1.09000 * 109.47048 * 300.30043 * 1 2 3 32 32 H 1.09004 * 109.47204 * 120.00075 * 2 1 3 33 33 H 1.09001 * 109.46854 * 240.00294 * 2 1 3 34 34 H 0.96991 * 120.00395 * 179.97438 * 8 7 5 35 35 H 1.00902 * 111.00256 * 37.26031 * 13 3 2 36 36 H 1.08004 * 119.99625 * 359.97438 * 17 16 14 37 37 H 1.08003 * 119.99508 * 180.27376 * 18 17 16 38 38 H 1.07994 * 120.00314 * 179.83841 * 19 18 17 39 39 H 1.08000 * 120.00142 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.00294 * 179.97438 * 21 20 19 41 41 H 0.96695 * 114.00145 * 59.99950 * 24 22 14 42 42 H 1.09003 * 109.47138 * 299.99616 * 28 27 25 43 43 H 1.09000 * 109.47445 * 59.99742 * 28 27 25 44 44 H 1.09005 * 109.47393 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1282 1.4431 0.0625 5 6 1.4684 2.1774 1.1852 6 1 0.8547 3.0529 1.0329 7 6 1.7290 1.7318 2.4636 8 7 2.4767 0.6659 2.6491 9 14 1.0201 2.6423 3.9327 10 1 -0.4625 2.6409 3.8475 11 1 1.4451 1.9676 5.1854 12 1 1.5145 4.0426 3.9328 13 7 1.6202 2.1103 -1.2392 14 6 2.5888 1.8750 -2.3182 15 1 3.2423 1.0464 -2.0455 16 6 1.8529 1.5371 -3.5891 17 6 0.6883 2.2080 -3.9127 18 6 0.0156 1.9010 -5.0806 19 6 0.5024 0.9169 -5.9205 20 6 1.6641 0.2424 -5.5943 21 6 2.3393 0.5524 -4.4285 22 6 3.4276 3.1363 -2.5345 23 1 4.1466 2.9615 -3.3349 24 8 2.5708 4.2226 -2.8920 25 6 4.1636 3.4741 -1.2637 26 8 3.9082 4.4957 -0.6711 27 8 5.1028 2.6403 -0.7900 28 6 5.7705 3.0295 0.4392 29 1 -0.3633 -1.0277 0.0056 30 1 -0.3634 0.5090 -0.8926 31 1 -0.3633 0.5185 0.8873 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.6603 0.3527 3.5485 35 1 0.6949 1.8156 -1.5133 36 1 0.3057 2.9741 -3.2545 37 1 -0.8918 2.4282 -5.3357 38 1 -0.0246 0.6753 -6.8316 39 1 2.0443 -0.5268 -6.2503 40 1 3.2466 0.0252 -4.1734 41 1 1.9045 4.4342 -2.2241 42 1 6.2744 3.9849 0.2921 43 1 5.0348 3.1259 1.2376 44 1 6.5035 2.2698 0.7108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:16 Heat of formation + Delta-G solvation = -126.198723 kcal Electronic energy + Delta-G solvation = -27167.170126 eV Core-core repulsion = 23469.859586 eV Total energy + Delta-G solvation = -3697.310540 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72442 -40.37176 -38.47490 -37.78314 -36.83034 -34.72788 -33.14153 -31.73080 -31.04284 -30.22791 -28.37084 -27.70394 -25.39425 -24.79999 -23.28220 -22.20676 -21.72543 -21.03180 -19.13368 -18.38121 -18.20697 -17.75087 -17.27379 -16.84960 -16.64260 -16.38429 -16.04953 -15.36524 -15.26215 -15.07693 -14.87944 -14.47243 -14.18451 -14.09037 -13.96677 -13.72319 -13.50447 -13.20298 -13.03293 -12.87192 -12.83341 -12.68804 -12.45373 -12.15054 -12.09046 -11.86695 -11.74592 -11.67592 -11.66454 -11.44889 -11.02578 -10.91041 -10.40311 -9.69076 -9.55062 -9.08128 -8.04826 -6.10706 0.49649 0.63067 1.28834 1.39589 1.41316 1.47619 1.83587 2.43859 2.98449 3.19430 3.24723 3.45512 3.74932 3.99167 4.03111 4.17057 4.28230 4.28707 4.36995 4.40986 4.46056 4.51685 4.57345 4.61031 4.71285 4.73793 4.77791 4.85803 5.11454 5.17195 5.26517 5.35375 5.42640 5.47380 5.65747 5.68182 5.72925 5.74551 5.76232 5.88441 6.21970 6.32024 6.47641 6.63215 6.75982 6.84445 6.98712 7.55337 8.99594 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.005870 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.783056 B = 4768.733765 C = 5809.838736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.137 4.137 3 C 0.225 3.775 4 H 0.013 0.987 5 C -0.493 4.493 6 H 0.045 0.955 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.937 3.063 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.681 5.681 14 C 0.105 3.895 15 H 0.066 0.934 16 C -0.095 4.095 17 C -0.103 4.103 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.122 4.122 22 C 0.147 3.853 23 H 0.151 0.849 24 O -0.530 6.530 25 C 0.442 3.558 26 O -0.529 6.529 27 O -0.363 6.363 28 C 0.040 3.960 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.024 0.976 34 H 0.258 0.742 35 H 0.343 0.657 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.129 0.871 41 H 0.390 0.610 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -1.494 -15.246 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.177 4.177 3 C 0.117 3.883 4 H 0.030 0.970 5 C -0.532 4.532 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.553 5.553 9 Si 0.765 3.235 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.314 5.314 14 C -0.006 4.006 15 H 0.084 0.916 16 C -0.096 4.096 17 C -0.121 4.121 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.143 4.143 21 C -0.141 4.141 22 C 0.085 3.915 23 H 0.168 0.832 24 O -0.337 6.337 25 C 0.285 3.715 26 O -0.417 6.417 27 O -0.279 6.279 28 C -0.053 4.053 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.164 0.836 36 H 0.139 0.861 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.147 0.853 41 H 0.241 0.759 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.279 -0.677 -15.221 15.290 hybrid contribution -0.592 -0.298 2.052 2.156 sum 0.687 -0.976 -13.169 13.223 Atomic orbital electron populations 1.21443 0.96233 0.99325 1.00611 1.21942 0.96157 1.00086 0.99479 1.19047 0.94135 0.88983 0.86128 0.96960 1.21152 1.30317 1.10891 0.90820 0.93680 1.25400 0.95982 0.95767 1.00599 1.69965 1.39241 1.24412 1.21712 0.85936 0.79127 0.78596 0.79843 1.19782 1.21128 1.21130 1.60777 1.04926 1.62672 1.03030 1.20948 0.94718 0.94880 0.90085 0.91606 1.19799 0.96440 0.97779 0.95595 1.21086 0.94694 0.98903 0.97424 1.21395 1.00506 0.98357 0.94330 1.21479 0.96454 0.95944 1.00180 1.21379 0.95792 1.00406 0.96697 1.21254 1.00659 0.97207 0.94970 1.21639 0.91310 0.87806 0.90792 0.83189 1.86441 1.48449 1.51677 1.47122 1.25149 0.77451 0.81057 0.87813 1.90605 1.63874 1.27900 1.59347 1.86437 1.49792 1.50189 1.41498 1.23286 0.96407 1.02484 0.83148 0.94023 0.93489 0.93976 0.91841 0.95684 0.93314 0.83567 0.86075 0.84420 0.83787 0.83840 0.85307 0.75875 0.91312 0.94543 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.41 71.98 0.68 -4.11 16 2 C -0.14 -6.13 5.53 30.59 0.17 -5.96 16 3 C 0.23 10.51 1.75 44.17 0.08 10.59 16 4 H 0.01 0.65 6.08 -2.39 -0.01 0.64 16 5 C -0.49 -26.14 7.41 25.60 0.19 -25.95 16 6 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 7 C 0.02 1.14 5.30 84.65 0.45 1.59 16 8 N -0.91 -50.57 11.36 21.45 0.24 -50.33 16 9 Si 0.94 44.17 29.54 68.60 2.03 46.20 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 13 N -0.68 -26.00 4.91 -477.18 -2.34 -28.34 16 14 C 0.10 3.40 2.06 44.17 0.09 3.49 16 15 H 0.07 2.30 7.17 -2.39 -0.02 2.28 16 16 C -0.10 -2.63 4.69 -19.87 -0.09 -2.72 16 17 C -0.10 -2.68 7.87 22.27 0.18 -2.50 16 18 C -0.13 -2.75 10.05 22.27 0.22 -2.53 16 19 C -0.12 -2.33 10.05 22.27 0.22 -2.10 16 20 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 21 C -0.12 -2.91 9.67 22.27 0.22 -2.70 16 22 C 0.15 4.73 3.34 29.85 0.10 4.83 16 23 H 0.15 3.97 8.14 -2.38 -0.02 3.95 16 24 O -0.53 -17.30 11.67 -129.95 -1.52 -18.81 16 25 C 0.44 17.27 5.90 71.24 0.42 17.69 16 26 O -0.53 -24.10 16.07 28.39 0.46 -23.64 16 27 O -0.36 -13.59 9.73 -51.40 -0.50 -14.09 16 28 C 0.04 1.37 10.56 113.37 1.20 2.57 16 29 H 0.04 1.50 8.14 -2.38 -0.02 1.49 16 30 H 0.05 1.70 6.37 -2.39 -0.02 1.68 16 31 H 0.04 1.89 7.10 -2.39 -0.02 1.88 16 32 H 0.06 3.27 6.17 -2.38 -0.01 3.25 16 33 H 0.02 1.02 7.94 -2.39 -0.02 1.00 16 34 H 0.26 13.85 8.31 -92.72 -0.77 13.08 16 35 H 0.34 12.56 4.77 -89.69 -0.43 12.13 16 36 H 0.12 3.28 7.22 -2.91 -0.02 3.26 16 37 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.13 2.75 8.04 -2.91 -0.02 2.73 16 41 H 0.39 13.19 8.23 -74.06 -0.61 12.58 16 42 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 43 H 0.04 1.50 8.13 -2.39 -0.02 1.48 16 44 H 0.12 3.39 8.14 -2.38 -0.02 3.37 16 Total: -1.00 -63.49 358.29 2.69 -60.80 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -0.02 Total: 38.28 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 4.34 Total: -10.07 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.10 Total: -78.67 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: -1.56 Total: -56.54 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -63.49 2.69 -60.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.396 kcal (2) G-P(sol) polarization free energy of solvation -63.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds