Wall clock time and date at job start Tue Mar 31 2020 09:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99811 * 2 1 4 4 C 1.53007 * 109.46955 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47028 * 65.00160 * 4 3 2 6 6 C 1.42896 * 114.00118 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47398 * 180.02562 * 6 5 4 8 8 C 1.38351 * 119.85608 * 89.99500 * 7 6 5 9 9 C 1.37962 * 120.14603 * 179.97438 * 8 7 6 10 10 C 1.39578 * 119.85187 * 0.02593 * 9 8 7 11 11 C 1.47841 * 120.14691 * 179.97438 * 10 9 8 12 12 O 1.21560 * 120.00155 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00513 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00348 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47197 * 34.99139 * 14 13 11 16 16 C 1.53005 * 109.46437 * 274.99648 * 14 13 11 17 17 C 1.50701 * 109.47260 * 155.00133 * 14 13 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27562 * 17 14 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48494 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47301 * 119.99669 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99516 * 21 19 17 25 25 C 1.39578 * 119.70971 * 0.25239 * 10 9 8 26 26 C 1.37955 * 119.85210 * 359.46740 * 25 10 9 27 27 H 1.09004 * 109.47290 * 60.00299 * 1 2 3 28 28 H 1.09004 * 109.47302 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47490 * 300.00352 * 1 2 3 30 30 H 1.08998 * 109.47299 * 59.99848 * 3 2 1 31 31 H 1.08998 * 109.47398 * 299.99449 * 3 2 1 32 32 H 1.08997 * 109.46935 * 304.99968 * 4 3 2 33 33 H 1.09002 * 109.47160 * 184.99940 * 4 3 2 34 34 H 1.09001 * 109.47358 * 59.99539 * 6 5 4 35 35 H 1.09003 * 109.47132 * 299.99421 * 6 5 4 36 36 H 1.07996 * 119.93200 * 359.97438 * 8 7 6 37 37 H 1.08000 * 120.07693 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99698 * 359.97438 * 13 11 10 39 39 H 1.08995 * 109.47438 * 299.99560 * 16 14 13 40 40 H 1.08996 * 109.47069 * 60.00420 * 16 14 13 41 41 H 1.09004 * 109.46658 * 179.97438 * 16 14 13 42 42 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.07081 * 179.72901 * 25 10 9 44 44 H 1.08003 * 119.92643 * 180.27835 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4187 -1.3216 7 6 5.7214 -0.2250 -2.6412 8 6 5.9631 0.5651 -3.7510 9 6 6.2748 -0.0179 -4.9619 10 6 6.3456 -1.4080 -5.0660 11 6 6.6785 -2.0396 -6.3606 12 8 6.8918 -1.3480 -7.3373 13 7 6.7456 -3.3821 -6.4580 14 6 7.0761 -4.0079 -7.7408 15 1 7.7918 -3.3838 -8.2758 16 6 5.8041 -4.1574 -8.5778 17 6 7.6790 -5.3672 -7.4960 18 1 7.8039 -5.7286 -6.4860 19 6 8.0768 -6.1468 -8.5613 20 7 7.9249 -5.7066 -9.7913 21 14 8.8313 -7.8284 -8.2577 22 1 8.8918 -8.0873 -6.7967 23 1 7.9986 -8.8700 -8.9113 24 1 10.2037 -7.8648 -8.8237 25 6 6.0950 -2.1994 -3.9439 26 6 5.7900 -1.6035 -2.7376 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5685 0.8427 33 1 3.9784 2.1766 0.0902 34 1 5.7354 -0.2135 -0.5070 35 1 5.8638 1.3945 -1.2593 36 1 5.9076 1.6405 -3.6692 37 1 6.4628 0.5999 -5.8276 38 1 6.5758 -3.9340 -5.6786 39 1 5.0883 -4.7815 -8.0429 40 1 5.3680 -3.1743 -8.7549 41 1 6.0500 -4.6226 -9.5324 42 1 8.2051 -6.2549 -10.5407 43 1 6.1438 -3.2756 -4.0190 44 1 5.6003 -2.2147 -1.8676 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360155708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:29 Heat of formation + Delta-G solvation = -107.094397 kcal Electronic energy + Delta-G solvation = -24108.994646 eV Core-core repulsion = 20412.512531 eV Total energy + Delta-G solvation = -3696.482114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.84943 -38.81153 -38.07898 -37.14710 -34.80086 -32.71894 -32.09134 -30.88842 -30.34842 -28.79568 -26.72137 -26.14122 -25.23412 -22.90552 -22.61483 -22.53035 -20.78354 -19.40928 -17.94848 -17.30712 -17.08448 -16.33280 -16.01893 -15.77301 -15.61727 -15.25485 -15.02121 -14.75644 -14.34363 -14.18117 -13.90606 -13.46584 -13.31886 -12.97945 -12.71961 -12.46289 -12.40554 -12.25768 -11.81153 -11.67824 -11.44020 -11.26998 -11.07856 -10.97867 -10.94218 -10.72393 -10.28951 -10.22634 -10.05178 -9.91586 -9.12742 -9.02005 -8.90490 -8.76960 -8.54538 -7.89115 -6.11128 -4.20366 0.95049 1.46432 3.11081 3.24944 3.32584 3.35452 3.40691 3.66480 4.06952 4.23918 4.39026 4.55942 4.68727 4.71939 4.80312 4.93635 4.96486 5.00415 5.06146 5.10604 5.13580 5.14551 5.21225 5.34282 5.36718 5.43040 5.46032 5.68075 5.88876 6.05830 6.37669 6.51044 6.54356 6.75322 6.85283 6.90300 6.95247 6.99853 7.16898 7.46041 7.58011 7.71077 7.93092 8.15986 8.66297 8.78890 9.11047 9.47026 10.94999 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.020306 B = 0.002354 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.599715 B =11892.268395 C =12316.750699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.062 3.938 5 O -0.372 6.372 6 C 0.104 3.896 7 C -0.081 4.081 8 C -0.108 4.108 9 C -0.069 4.069 10 C -0.112 4.112 11 C 0.540 3.460 12 O -0.551 6.551 13 N -0.701 5.701 14 C 0.263 3.737 15 H 0.050 0.950 16 C -0.147 4.147 17 C -0.533 4.533 18 H 0.062 0.938 19 C 0.065 3.935 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.091 4.091 26 C -0.104 4.104 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.388 0.612 39 H 0.027 0.973 40 H 0.015 0.985 41 H 0.091 0.909 42 H 0.264 0.736 43 H 0.131 0.869 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.037 13.647 21.828 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.291 6.291 6 C 0.028 3.972 7 C -0.081 4.081 8 C -0.126 4.126 9 C -0.088 4.088 10 C -0.116 4.116 11 C 0.326 3.674 12 O -0.431 6.431 13 N -0.349 5.349 14 C 0.161 3.839 15 H 0.068 0.932 16 C -0.206 4.206 17 C -0.571 4.571 18 H 0.080 0.920 19 C -0.138 4.138 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.110 4.110 26 C -0.122 4.122 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.222 0.778 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.853 13.808 20.751 26.802 hybrid contribution 0.227 -0.892 0.701 1.158 sum -9.626 12.916 21.452 26.827 Atomic orbital electron populations 1.22754 0.80999 1.02994 0.99820 1.87975 1.19648 1.27178 1.95355 1.22561 0.92388 0.85641 1.00845 1.22523 0.93427 0.97540 0.87982 1.88069 1.21453 1.81975 1.37635 1.21328 0.82044 0.99151 0.94708 1.19646 1.00188 0.93774 0.94496 1.20959 0.99947 0.99738 0.91997 1.21276 0.95941 0.93827 0.97765 1.20393 1.02199 0.94523 0.94445 1.18257 0.78424 0.83330 0.87437 1.90721 1.51051 1.62914 1.38445 1.46504 1.68098 1.05138 1.15114 1.18799 0.93642 0.92585 0.78837 0.93204 1.22078 0.97525 0.97811 1.03155 1.21243 1.41690 1.00867 0.93324 0.92003 1.24894 0.95469 0.98483 0.94924 1.69914 1.46527 1.37487 0.98118 0.86381 0.78874 0.83416 0.78347 1.19729 1.20863 1.20885 1.21387 0.97492 1.00076 0.92049 1.20942 0.99583 0.93914 0.97790 0.93932 0.89483 0.94266 0.91894 0.92314 0.92376 0.91762 0.92269 0.92416 0.85668 0.84571 0.77804 0.95398 0.96566 0.89083 0.92618 0.85168 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.93 10.67 -40.08 -0.43 -4.36 16 3 C 0.06 0.47 6.32 37.16 0.23 0.71 16 4 C 0.06 0.48 6.32 37.16 0.23 0.71 16 5 O -0.37 -4.14 10.29 -40.08 -0.41 -4.55 16 6 C 0.10 0.99 6.05 36.01 0.22 1.20 16 7 C -0.08 -0.97 5.52 -104.53 -0.58 -1.55 16 8 C -0.11 -1.36 9.68 -39.64 -0.38 -1.74 16 9 C -0.07 -1.06 9.60 -39.18 -0.38 -1.43 16 10 C -0.11 -1.92 5.87 -104.97 -0.62 -2.54 16 11 C 0.54 11.60 7.74 -12.33 -0.10 11.51 16 12 O -0.55 -13.82 16.01 5.31 0.09 -13.74 16 13 N -0.70 -15.31 5.02 -55.88 -0.28 -15.59 16 14 C 0.26 6.87 2.56 -69.08 -0.18 6.69 16 15 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 16 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 17 C -0.53 -14.31 8.72 -34.44 -0.30 -14.61 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.07 1.78 5.31 -17.82 -0.09 1.69 16 20 N -0.88 -25.12 11.33 55.43 0.63 -24.49 16 21 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.09 -1.31 9.54 -39.19 -0.37 -1.68 16 26 C -0.10 -1.30 9.68 -39.64 -0.38 -1.68 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.14 2.10 7.65 -52.49 -0.40 1.70 16 38 H 0.39 7.33 6.57 -40.82 -0.27 7.06 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 2.50 6.08 -51.93 -0.32 2.19 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 43 H 0.13 1.69 6.41 -52.49 -0.34 1.35 16 44 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -33.42 373.25 -7.78 -41.20 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.75 Total: 4.94 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.23 Total: -4.83 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.35 Total: -40.08 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.76 Total: -22.65 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.42 -7.78 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360155708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.895 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds