Wall clock time and date at job start Tue Mar 31 2020 09:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37863 * 120.06189 * 2 1 4 4 C 1.38632 * 120.11865 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.88285 * 179.97438 * 4 3 2 6 6 C 1.38683 * 120.24067 * 359.97438 * 4 3 2 7 7 C 1.37821 * 120.11670 * 0.02562 * 6 4 3 8 8 C 1.39629 * 120.05919 * 179.97438 * 2 1 3 9 9 C 1.47722 * 120.11764 * 359.75194 * 8 2 1 10 10 O 1.21572 * 120.00049 * 55.79970 * 9 8 2 11 11 N 1.34776 * 119.99767 * 235.79681 * 9 8 2 12 12 C 1.46507 * 119.99627 * 185.43560 * 11 9 8 13 13 C 1.50703 * 109.47302 * 89.99958 * 12 11 9 14 14 H 1.07997 * 119.99489 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99952 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99851 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00046 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47208 * 89.99608 * 17 15 13 19 19 H 1.48494 * 109.47371 * 209.99705 * 17 15 13 20 20 H 1.48500 * 109.47358 * 330.00093 * 17 15 13 21 21 C 1.46499 * 120.00238 * 5.43380 * 11 9 8 22 22 C 1.52991 * 109.47101 * 84.83626 * 21 11 9 23 23 C 1.53005 * 109.47096 * 184.75021 * 22 21 11 24 24 C 1.52994 * 109.47250 * 65.98745 * 23 22 21 25 25 C 1.53005 * 109.47037 * 185.98671 * 23 22 21 26 26 H 1.09000 * 109.47479 * 274.83533 * 1 2 3 27 27 H 1.09007 * 109.46892 * 34.83103 * 1 2 3 28 28 H 1.08995 * 109.47240 * 154.82721 * 1 2 3 29 29 H 1.07992 * 119.93866 * 359.94629 * 3 2 1 30 30 H 1.07993 * 119.94158 * 180.02562 * 6 4 3 31 31 H 1.08002 * 120.05903 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.46938 * 210.00060 * 12 11 9 33 33 H 1.08991 * 109.47183 * 329.99599 * 12 11 9 34 34 H 0.97004 * 119.99884 * 180.02562 * 16 15 13 35 35 H 1.09007 * 109.47160 * 204.83953 * 21 11 9 36 36 H 1.08992 * 109.47064 * 324.83434 * 21 11 9 37 37 H 1.08997 * 109.47464 * 304.75076 * 22 21 11 38 38 H 1.09005 * 109.47441 * 64.75115 * 22 21 11 39 39 H 1.08996 * 109.46761 * 305.98224 * 23 22 21 40 40 H 1.08996 * 109.46996 * 184.85881 * 24 23 22 41 41 H 1.09004 * 109.46793 * 304.85435 * 24 23 22 42 42 H 1.08998 * 109.47488 * 64.85404 * 24 23 22 43 43 H 1.09001 * 109.47235 * 59.99673 * 25 23 22 44 44 H 1.08994 * 109.46823 * 179.97438 * 25 23 22 45 45 H 1.08996 * 109.46851 * 299.99959 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1932 0.0000 4 6 3.5839 1.1946 0.0005 5 9 4.2558 2.3666 0.0000 6 6 4.2835 -0.0029 0.0016 7 6 3.6031 -1.2014 0.0016 8 6 2.2064 -1.2085 0.0005 9 6 1.4717 -2.4901 0.0066 10 8 0.6527 -2.7254 -0.8605 11 7 1.7095 -3.3985 0.9735 12 6 1.0707 -4.7156 0.9141 13 6 1.9545 -5.6687 0.1514 14 1 2.8979 -5.3275 -0.2486 15 6 1.5593 -6.9764 -0.0346 16 7 2.3303 -7.8079 -0.7006 17 14 -0.0721 -7.5666 0.6579 18 1 -1.1419 -7.3605 -0.3512 19 1 0.0242 -9.0109 0.9892 20 1 -0.3958 -6.7974 1.8863 21 6 2.6066 -3.0688 2.0838 22 6 1.8233 -2.3292 3.1700 23 6 2.7823 -1.8810 4.2747 24 6 3.7480 -0.8332 3.7177 25 6 1.9824 -1.2745 5.4295 26 1 -0.3634 0.0866 1.0240 27 1 -0.3633 0.8436 -0.5870 28 1 -0.3633 -0.9300 -0.4371 29 1 1.6576 2.1284 -0.0009 30 1 5.3634 0.0039 0.0024 31 1 4.1489 -2.1333 0.0020 32 1 0.9187 -5.0916 1.9259 33 1 0.1082 -4.6302 0.4099 34 1 2.0521 -8.7279 -0.8319 35 1 3.0244 -3.9864 2.4980 36 1 3.4144 -2.4330 1.7216 37 1 1.3358 -1.4563 2.7359 38 1 1.0694 -2.9944 3.5912 39 1 3.3473 -2.7402 4.6360 40 1 4.4850 -0.5773 4.4788 41 1 4.2556 -1.2365 2.8414 42 1 3.1914 0.0606 3.4358 43 1 1.2944 -2.0210 5.8263 44 1 2.6656 -0.9557 6.2166 45 1 1.4174 -0.4153 5.0681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128928708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:57 Heat of formation + Delta-G solvation = -71.392556 kcal Electronic energy + Delta-G solvation = -26396.754418 eV Core-core repulsion = 22714.193241 eV Total energy + Delta-G solvation = -3682.561177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.99066 -40.23084 -38.00828 -36.88354 -34.70769 -32.79262 -32.59376 -30.92005 -29.32430 -27.80480 -27.18029 -26.90506 -23.97072 -23.18362 -22.41700 -21.45874 -19.95769 -18.94135 -17.26115 -17.05069 -16.89961 -16.48931 -15.86537 -15.60560 -15.08745 -14.62084 -14.49119 -14.22404 -13.87248 -13.62273 -13.56544 -13.49688 -13.26823 -12.97609 -12.76928 -12.53504 -12.28205 -12.23009 -11.99347 -11.93207 -11.60485 -11.54023 -11.20828 -11.06856 -11.04039 -10.89077 -10.59349 -10.53230 -10.35922 -10.15763 -9.57855 -9.21118 -8.96552 -8.63704 -8.58474 -7.76351 -6.12426 -4.11796 0.89883 1.15328 3.08733 3.26733 3.32698 3.34739 3.55905 3.76680 4.12488 4.36430 4.63730 4.69464 4.75452 4.90844 4.94407 5.02567 5.06845 5.21283 5.28780 5.35044 5.53588 5.56108 5.63769 5.65120 5.71778 5.74175 5.78119 5.80275 5.86112 5.89670 6.00377 6.06537 6.13830 6.15245 6.20224 6.22433 6.38738 6.46037 6.47313 6.66190 6.78096 6.91450 7.27471 7.56119 8.14571 8.41552 8.81550 8.91007 9.47554 11.00756 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.004907 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.073121 B = 5704.880792 C = 6575.717060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.014 4.014 3 C -0.161 4.161 4 C 0.110 3.890 5 F -0.141 7.141 6 C -0.163 4.163 7 C -0.056 4.056 8 C -0.120 4.120 9 C 0.556 3.444 10 O -0.532 6.532 11 N -0.582 5.582 12 C 0.215 3.785 13 C -0.531 4.531 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.101 3.899 22 C -0.132 4.132 23 C -0.094 4.094 24 C -0.148 4.148 25 C -0.145 4.145 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 17.543 9.140 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.015 4.015 3 C -0.180 4.180 4 C 0.091 3.909 5 F -0.120 7.120 6 C -0.181 4.181 7 C -0.075 4.075 8 C -0.124 4.124 9 C 0.343 3.657 10 O -0.409 6.409 11 N -0.312 5.312 12 C 0.095 3.905 13 C -0.570 4.570 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.023 4.023 22 C -0.171 4.171 23 C -0.113 4.113 24 C -0.205 4.205 25 C -0.202 4.202 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.274 17.220 8.623 19.300 hybrid contribution -0.469 -0.253 0.284 0.603 sum 0.806 16.967 8.907 19.180 Atomic orbital electron populations 1.21080 0.90090 1.05236 1.02670 1.19694 0.96638 0.90620 0.94514 1.20881 0.92112 0.99020 1.06008 1.17809 0.90089 0.81103 1.01912 1.91490 1.80553 1.46107 1.93829 1.21008 1.00861 0.90854 1.05408 1.21165 0.92832 0.98164 0.95329 1.20097 0.93939 0.94152 1.04173 1.18020 0.82581 0.82948 0.82164 1.90741 1.34663 1.78395 1.37148 1.47877 1.46003 1.15062 1.22264 1.19718 0.94625 0.78807 0.97367 1.21306 1.06438 0.94110 1.35100 0.90720 1.24837 0.96887 0.96506 0.94626 1.69892 1.37432 1.05423 1.40670 0.86866 0.84677 0.78161 0.80100 1.19860 1.21051 1.19026 1.21793 0.92598 1.00690 0.87178 1.22091 0.98622 1.00318 0.96023 1.21052 0.96539 0.98469 0.95265 1.21903 0.98980 0.98772 1.00894 1.21818 0.99879 1.00723 0.97793 0.90879 0.91084 0.88638 0.84577 0.84406 0.84065 0.95064 0.94355 0.92511 0.89612 0.90512 0.92067 0.91562 0.90933 0.93025 0.92254 0.92929 0.92766 0.92934 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.68 36.00 0.35 -1.38 16 2 C -0.01 -0.19 5.91 -104.24 -0.62 -0.80 16 3 C -0.16 -1.92 9.68 -39.57 -0.38 -2.30 16 4 C 0.11 1.33 7.31 -39.27 -0.29 1.04 16 5 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 6 C -0.16 -1.92 10.01 -39.57 -0.40 -2.31 16 7 C -0.06 -0.78 7.59 -39.20 -0.30 -1.08 16 8 C -0.12 -1.91 4.87 -104.97 -0.51 -2.42 16 9 C 0.56 11.16 6.42 -12.39 -0.08 11.08 16 10 O -0.53 -12.70 14.72 5.30 0.08 -12.62 16 11 N -0.58 -11.58 2.47 -176.22 -0.43 -12.01 16 12 C 0.22 5.10 4.25 -5.19 -0.02 5.08 16 13 C -0.53 -14.83 9.94 -34.44 -0.34 -15.18 16 14 H 0.07 2.28 8.06 -52.49 -0.42 1.85 16 15 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 16 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 17 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 21 C 0.10 1.56 5.06 -4.05 -0.02 1.54 16 22 C -0.13 -1.72 4.96 -26.73 -0.13 -1.85 16 23 C -0.09 -1.00 2.91 -90.62 -0.26 -1.26 16 24 C -0.15 -1.48 9.07 37.15 0.34 -1.14 16 25 C -0.14 -1.37 9.19 37.16 0.34 -1.03 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.75 8.12 -51.92 -0.42 0.33 16 28 H 0.09 1.53 5.60 -51.93 -0.29 1.24 16 29 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.14 1.94 7.41 -52.49 -0.39 1.55 16 32 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.04 0.97 6.78 -51.93 -0.35 0.62 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.09 1.38 8.03 -51.92 -0.42 0.96 16 36 H 0.08 1.06 2.73 -51.93 -0.14 0.92 16 37 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.61 6.30 -51.93 -0.33 0.28 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -31.88 366.73 -8.05 -39.93 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.95 Total: 0.70 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.42 Total: -9.99 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.34 Total: -38.39 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.88 -8.05 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128928708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.461 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds