Wall clock time and date at job start Tue Mar 31 2020 09:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37863 * 120.06189 * 2 1 4 4 C 1.38632 * 120.11865 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.88285 * 179.97438 * 4 3 2 6 6 C 1.38683 * 120.24067 * 359.97438 * 4 3 2 7 7 C 1.37821 * 120.11670 * 0.02562 * 6 4 3 8 8 C 1.39629 * 120.05919 * 179.97438 * 2 1 3 9 9 C 1.47722 * 120.11764 * 359.75194 * 8 2 1 10 10 O 1.21572 * 120.00049 * 55.79970 * 9 8 2 11 11 N 1.34776 * 119.99767 * 235.79681 * 9 8 2 12 12 C 1.46507 * 119.99627 * 185.43560 * 11 9 8 13 13 C 1.50703 * 109.47302 * 89.99958 * 12 11 9 14 14 H 1.07997 * 119.99489 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99952 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99851 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00046 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47208 * 89.99608 * 17 15 13 19 19 H 1.48494 * 109.47371 * 209.99705 * 17 15 13 20 20 H 1.48500 * 109.47358 * 330.00093 * 17 15 13 21 21 C 1.46499 * 120.00238 * 5.43380 * 11 9 8 22 22 C 1.52991 * 109.47101 * 84.83626 * 21 11 9 23 23 C 1.53005 * 109.47096 * 184.75021 * 22 21 11 24 24 C 1.52994 * 109.47250 * 65.98745 * 23 22 21 25 25 C 1.53005 * 109.47037 * 185.98671 * 23 22 21 26 26 H 1.09000 * 109.47479 * 274.83533 * 1 2 3 27 27 H 1.09007 * 109.46892 * 34.83103 * 1 2 3 28 28 H 1.08995 * 109.47240 * 154.82721 * 1 2 3 29 29 H 1.07992 * 119.93866 * 359.94629 * 3 2 1 30 30 H 1.07993 * 119.94158 * 180.02562 * 6 4 3 31 31 H 1.08002 * 120.05903 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.46938 * 210.00060 * 12 11 9 33 33 H 1.08991 * 109.47183 * 329.99599 * 12 11 9 34 34 H 0.97004 * 119.99884 * 180.02562 * 16 15 13 35 35 H 1.09007 * 109.47160 * 204.83953 * 21 11 9 36 36 H 1.08992 * 109.47064 * 324.83434 * 21 11 9 37 37 H 1.08997 * 109.47464 * 304.75076 * 22 21 11 38 38 H 1.09005 * 109.47441 * 64.75115 * 22 21 11 39 39 H 1.08996 * 109.46761 * 305.98224 * 23 22 21 40 40 H 1.08996 * 109.46996 * 184.85881 * 24 23 22 41 41 H 1.09004 * 109.46793 * 304.85435 * 24 23 22 42 42 H 1.08998 * 109.47488 * 64.85404 * 24 23 22 43 43 H 1.09001 * 109.47235 * 59.99673 * 25 23 22 44 44 H 1.08994 * 109.46823 * 179.97438 * 25 23 22 45 45 H 1.08996 * 109.46851 * 299.99959 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1932 0.0000 4 6 3.5839 1.1946 0.0005 5 9 4.2558 2.3666 0.0000 6 6 4.2835 -0.0029 0.0016 7 6 3.6031 -1.2014 0.0016 8 6 2.2064 -1.2085 0.0005 9 6 1.4717 -2.4901 0.0066 10 8 0.6527 -2.7254 -0.8605 11 7 1.7095 -3.3985 0.9735 12 6 1.0707 -4.7156 0.9141 13 6 1.9545 -5.6687 0.1514 14 1 2.8979 -5.3275 -0.2486 15 6 1.5593 -6.9764 -0.0346 16 7 2.3303 -7.8079 -0.7006 17 14 -0.0721 -7.5666 0.6579 18 1 -1.1419 -7.3605 -0.3512 19 1 0.0242 -9.0109 0.9892 20 1 -0.3958 -6.7974 1.8863 21 6 2.6066 -3.0688 2.0838 22 6 1.8233 -2.3292 3.1700 23 6 2.7823 -1.8810 4.2747 24 6 3.7480 -0.8332 3.7177 25 6 1.9824 -1.2745 5.4295 26 1 -0.3634 0.0866 1.0240 27 1 -0.3633 0.8436 -0.5870 28 1 -0.3633 -0.9300 -0.4371 29 1 1.6576 2.1284 -0.0009 30 1 5.3634 0.0039 0.0024 31 1 4.1489 -2.1333 0.0020 32 1 0.9187 -5.0916 1.9259 33 1 0.1082 -4.6302 0.4099 34 1 2.0521 -8.7279 -0.8319 35 1 3.0244 -3.9864 2.4980 36 1 3.4144 -2.4330 1.7216 37 1 1.3358 -1.4563 2.7359 38 1 1.0694 -2.9944 3.5912 39 1 3.3473 -2.7402 4.6360 40 1 4.4850 -0.5773 4.4788 41 1 4.2556 -1.2365 2.8414 42 1 3.1914 0.0606 3.4358 43 1 1.2944 -2.0210 5.8263 44 1 2.6656 -0.9557 6.2166 45 1 1.4174 -0.4153 5.0681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128928708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:56 Heat of formation + Delta-G solvation = -88.501647 kcal Electronic energy + Delta-G solvation = -26397.496324 eV Core-core repulsion = 22714.193241 eV Total energy + Delta-G solvation = -3683.303083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.95034 -41.56617 -39.27793 -38.05855 -36.17626 -34.68525 -33.78861 -32.21768 -30.72716 -29.26483 -28.11101 -27.94940 -25.31696 -24.67851 -23.65851 -22.72033 -20.86809 -20.35945 -19.10474 -18.35489 -18.23228 -17.67847 -17.31709 -16.62835 -16.34498 -16.12215 -15.83051 -15.36824 -15.21664 -14.75861 -14.60223 -14.55256 -14.48690 -14.28847 -14.14954 -13.86332 -13.69551 -13.58961 -13.09232 -12.96768 -12.87178 -12.78720 -12.62484 -12.47158 -12.19225 -12.13434 -12.01981 -11.81440 -11.62364 -11.46356 -11.41934 -10.83996 -10.79139 -9.99059 -9.70821 -9.39405 -8.34659 -6.39942 -0.19716 0.15283 1.32455 1.36221 1.44427 1.67813 2.18044 2.30322 2.50127 2.99676 3.12510 3.47503 3.64897 3.76725 3.94685 3.99417 4.07875 4.12224 4.26291 4.29868 4.55244 4.57258 4.63466 4.65980 4.71431 4.75464 4.79568 4.84831 4.88119 4.92447 4.93772 5.02029 5.07694 5.10927 5.16611 5.18075 5.20016 5.36667 5.42250 5.44347 5.49384 5.53661 5.64373 5.78314 6.21903 6.59263 6.61536 7.17226 7.31228 8.81970 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.004907 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.073121 B = 5704.880792 C = 6575.717060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 C -0.150 4.150 4 C 0.117 3.883 5 F -0.136 7.136 6 C -0.151 4.151 7 C -0.062 4.062 8 C -0.141 4.141 9 C 0.552 3.448 10 O -0.582 6.582 11 N -0.588 5.588 12 C 0.225 3.775 13 C -0.537 4.537 14 H 0.032 0.968 15 C 0.015 3.985 16 N -0.943 5.943 17 Si 0.944 3.056 18 H -0.276 1.276 19 H -0.275 1.275 20 H -0.239 1.239 21 C 0.098 3.902 22 C -0.122 4.122 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.142 4.142 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.134 0.866 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 20.097 11.149 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.018 4.018 3 C -0.168 4.168 4 C 0.097 3.903 5 F -0.114 7.114 6 C -0.169 4.169 7 C -0.080 4.080 8 C -0.145 4.145 9 C 0.341 3.659 10 O -0.463 6.463 11 N -0.317 5.317 12 C 0.103 3.897 13 C -0.575 4.575 14 H 0.050 0.950 15 C -0.183 4.183 16 N -0.583 5.583 17 Si 0.767 3.233 18 H -0.201 1.201 19 H -0.200 1.200 20 H -0.162 1.162 21 C -0.024 4.024 22 C -0.160 4.160 23 C -0.110 4.110 24 C -0.203 4.203 25 C -0.199 4.199 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.183 0.817 30 H 0.182 0.818 31 H 0.152 0.848 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.181 19.808 10.674 22.532 hybrid contribution -0.310 -0.963 -0.405 1.089 sum 0.871 18.846 10.269 21.479 Atomic orbital electron populations 1.21059 0.89684 1.04329 1.03795 1.19795 0.97076 0.90440 0.94467 1.21082 0.92166 0.99227 1.04369 1.17866 0.90240 0.81185 1.00959 1.91514 1.80465 1.45795 1.93662 1.21171 1.02077 0.89837 1.03854 1.21089 0.91980 0.98911 0.96048 1.19825 0.94543 0.92640 1.07454 1.18696 0.81970 0.84201 0.81011 1.90698 1.37004 1.79737 1.38879 1.47935 1.46339 1.13764 1.23653 1.19371 0.93182 0.80094 0.97094 1.21524 1.05489 0.95262 1.35258 0.94996 1.25785 1.00992 0.96611 0.94937 1.70039 1.39783 1.06012 1.42438 0.85772 0.79136 0.78226 0.80209 1.20133 1.19983 1.16202 1.22035 0.92829 1.00906 0.86646 1.21995 0.98635 0.99657 0.95752 1.21039 0.96268 0.98910 0.94774 1.21882 0.99018 0.98355 1.01067 1.21790 0.99978 1.00637 0.97509 0.89314 0.88540 0.92284 0.81665 0.81847 0.84839 0.93312 0.96024 0.92239 0.90614 0.88793 0.92146 0.92359 0.90826 0.91562 0.92872 0.92886 0.92934 0.91540 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.68 71.23 0.69 -2.57 16 2 C -0.02 -0.44 5.91 -19.62 -0.12 -0.55 16 3 C -0.15 -3.07 9.68 22.27 0.22 -2.86 16 4 C 0.12 2.43 7.31 22.47 0.16 2.59 16 5 F -0.14 -2.74 17.26 44.97 0.78 -1.97 16 6 C -0.15 -3.18 10.01 22.28 0.22 -2.95 16 7 C -0.06 -1.66 7.59 22.52 0.17 -1.49 16 8 C -0.14 -4.48 4.87 -20.09 -0.10 -4.57 16 9 C 0.55 23.00 6.42 86.75 0.56 23.56 16 10 O -0.58 -29.31 14.72 -3.94 -0.06 -29.37 16 11 N -0.59 -24.14 2.47 -829.70 -2.05 -26.19 16 12 C 0.22 10.93 4.25 85.63 0.36 11.29 16 13 C -0.54 -31.32 9.94 25.60 0.25 -31.07 16 14 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 15 C 0.02 0.89 5.47 84.65 0.46 1.35 16 16 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 17 Si 0.94 44.17 27.47 68.60 1.88 46.05 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 21 C 0.10 3.05 5.06 86.38 0.44 3.49 16 22 C -0.12 -3.05 4.96 30.59 0.15 -2.90 16 23 C -0.09 -1.75 2.91 -10.79 -0.03 -1.78 16 24 C -0.15 -2.54 9.07 71.98 0.65 -1.89 16 25 C -0.14 -2.32 9.19 71.98 0.66 -1.66 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.10 1.82 8.12 -2.38 -0.02 1.80 16 28 H 0.06 1.94 5.60 -2.39 -0.01 1.92 16 29 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.13 3.75 7.41 -2.91 -0.02 3.73 16 32 H 0.05 2.19 7.13 -2.38 -0.02 2.18 16 33 H 0.02 1.13 6.78 -2.39 -0.02 1.11 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.08 2.48 8.03 -2.38 -0.02 2.47 16 36 H 0.09 2.59 2.73 -2.39 -0.01 2.59 16 37 H 0.06 1.53 8.06 -2.39 -0.02 1.51 16 38 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 0.98 6.30 -2.39 -0.02 0.97 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -72.78 366.73 6.54 -66.25 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.92 Total: 16.11 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 4.76 Total: -12.02 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -1.75 Total: -85.06 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.06 Total: -29.37 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.97 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -72.78 6.54 -66.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128928708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.254 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds