Wall clock time and date at job start Tue Mar 31 2020 09:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38304 * 120.02423 * 2 1 4 4 C 1.38054 * 119.88811 * 180.30606 * 3 2 1 5 5 C 1.38614 * 120.48563 * 359.53276 * 4 3 2 6 6 C 1.38377 * 119.86606 * 0.26346 * 5 4 3 7 7 C 1.37813 * 120.02017 * 179.97438 * 2 1 3 8 8 N 1.39398 * 122.96349 * 180.28810 * 6 5 4 9 9 C 1.46900 * 111.02041 * 105.48869 * 8 6 5 10 10 C 1.50704 * 109.47326 * 167.21408 * 9 8 6 11 11 C 1.38630 * 119.75020 * 269.73663 * 10 9 8 12 12 C 1.37618 * 120.24734 * 179.72598 * 11 10 9 13 13 C 1.40721 * 119.74484 * 0.55687 * 12 11 10 14 14 C 1.41387 * 120.24396 * 179.68753 * 13 12 11 15 15 H 1.08004 * 120.00080 * 155.32255 * 14 13 12 16 16 C 1.39946 * 120.00386 * 335.31260 * 14 13 12 17 17 N 1.30827 * 120.00013 * 342.23550 * 16 14 13 18 18 Si 1.86797 * 120.00179 * 162.23200 * 16 14 13 19 19 H 1.48500 * 109.47070 * 94.66558 * 18 16 14 20 20 H 1.48494 * 109.47474 * 214.66726 * 18 16 14 21 21 H 1.48505 * 109.47358 * 334.67113 * 18 16 14 22 22 C 1.40718 * 119.50626 * 359.71535 * 13 12 11 23 23 C 1.37610 * 119.74751 * 359.97438 * 22 13 12 24 24 C 1.46433 * 113.12590 * 339.93258 * 8 6 5 25 25 C 1.53389 * 108.64756 * 53.36123 * 24 8 6 26 26 C 1.50804 * 118.12189 * 179.97438 * 5 4 3 27 27 H 1.08993 * 109.47190 * 270.02107 * 1 2 3 28 28 H 1.08999 * 109.46888 * 30.02155 * 1 2 3 29 29 H 1.08999 * 109.47256 * 150.01533 * 1 2 3 30 30 H 1.08003 * 120.05725 * 0.06139 * 3 2 1 31 31 H 1.08001 * 119.76059 * 179.76746 * 4 3 2 32 32 H 1.07998 * 119.79017 * 0.05545 * 7 2 1 33 33 H 1.08998 * 109.47568 * 287.21973 * 9 8 6 34 34 H 1.09005 * 109.46725 * 47.22265 * 9 8 6 35 35 H 1.08004 * 119.88114 * 359.97161 * 11 10 9 36 36 H 1.08001 * 120.12922 * 180.27992 * 12 11 10 37 37 H 0.96993 * 119.99926 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.11988 * 179.97438 * 22 13 12 39 39 H 1.07998 * 119.87450 * 180.02562 * 23 22 13 40 40 H 1.08995 * 109.60778 * 293.61618 * 24 8 6 41 41 H 1.09002 * 109.61068 * 173.11048 * 24 8 6 42 42 H 1.09003 * 109.76834 * 172.11834 * 25 24 8 43 43 H 1.09002 * 109.81696 * 51.36055 * 25 24 8 44 44 H 1.09002 * 109.43799 * 284.79888 * 26 5 4 45 45 H 1.09000 * 109.43795 * 44.71815 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1975 0.0000 4 6 3.5796 1.1942 -0.0064 5 6 4.2800 -0.0020 -0.0031 6 6 3.5926 -1.2030 0.0012 7 6 2.1965 -1.1932 0.0005 8 7 4.2310 -2.4422 0.0105 9 6 4.1419 -3.0708 1.3352 10 6 4.5543 -4.5168 1.2339 11 6 3.6005 -5.4873 0.9693 12 6 3.9667 -6.8101 0.8690 13 6 5.3133 -7.1772 1.0479 14 6 5.7002 -8.5338 0.9538 15 1 6.7168 -8.7887 0.6930 16 6 4.7659 -9.5466 1.1986 17 7 3.6585 -9.2739 1.8397 18 14 5.0997 -11.2876 0.6099 19 1 5.7189 -12.0715 1.7087 20 1 3.8221 -11.9268 0.2048 21 1 6.0239 -11.2487 -0.5520 22 6 6.2719 -6.1841 1.3218 23 6 5.8840 -4.8668 1.4112 24 6 5.6205 -2.3768 -0.4468 25 6 6.3572 -1.3105 0.3737 26 6 5.7869 0.0566 -0.0110 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5136 30 1 1.6604 2.1336 0.0010 31 1 4.1179 2.1305 -0.0102 32 1 1.6534 -2.1267 0.0000 33 1 4.8034 -2.5520 2.0289 34 1 3.1156 -3.0104 1.6977 35 1 2.5667 -5.2039 0.8373 36 1 3.2227 -7.5641 0.6583 37 1 3.0108 -9.9757 2.0091 38 1 7.3082 -6.4548 1.4612 39 1 6.6180 -4.1029 1.6209 40 1 5.6458 -2.1078 -1.5027 41 1 6.0993 -3.3453 -0.3019 42 1 7.4230 -1.3424 0.1473 43 1 6.2009 -1.4895 1.4375 44 1 6.1341 0.3274 -1.0081 45 1 6.1245 0.8047 0.7063 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657307708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:42 Heat of formation + Delta-G solvation = 34.011007 kcal Electronic energy + Delta-G solvation = -24465.794674 eV Core-core repulsion = 21218.573364 eV Total energy + Delta-G solvation = -3247.221311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.50382 -37.93426 -36.78256 -34.26156 -33.42436 -31.71573 -30.73312 -29.50812 -29.04912 -27.36896 -26.59445 -24.58492 -23.17850 -22.33397 -21.71048 -20.99304 -19.98462 -18.81424 -17.31945 -16.32794 -16.01475 -15.56121 -15.31731 -14.60620 -14.51958 -14.06464 -13.94484 -13.84248 -13.55811 -13.41291 -13.18105 -12.80269 -12.65861 -12.42691 -12.09385 -12.02686 -11.92924 -11.57716 -11.40769 -11.29260 -11.10366 -11.04141 -10.96375 -10.73935 -10.56213 -10.42913 -10.32424 -9.67091 -9.39525 -9.14182 -9.02372 -8.41134 -7.62890 -7.44826 -7.26632 -6.77808 -4.36139 1.44365 1.52360 2.72319 3.05289 3.06879 3.09673 3.16549 3.79730 3.92006 4.19328 4.64361 4.80411 4.85277 5.01280 5.01690 5.10804 5.22989 5.37612 5.51025 5.57716 5.59065 5.66845 5.69117 5.74247 5.80958 5.84908 5.89552 5.92169 6.06052 6.12992 6.21062 6.30428 6.33487 6.38294 6.41871 6.50266 6.63519 6.70371 6.94379 6.99502 7.05921 7.27123 7.31979 7.40354 7.60413 7.71659 7.89183 8.04507 8.12561 8.28869 8.63488 8.88377 8.96677 10.16704 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.003174 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.071694 B = 8818.507587 C = 9777.702340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.133 4.133 6 C 0.130 3.870 7 C -0.125 4.125 8 N -0.493 5.493 9 C 0.127 3.873 10 C -0.212 4.212 11 C -0.078 4.078 12 C -0.167 4.167 13 C 0.114 3.886 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.791 5.791 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.227 4.227 23 C -0.082 4.082 24 C 0.053 3.947 25 C -0.158 4.158 26 C -0.074 4.074 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.034 0.966 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 15.935 -2.756 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C -0.164 4.164 4 C -0.120 4.120 5 C -0.136 4.136 6 C 0.032 3.968 7 C -0.145 4.145 8 N -0.208 5.208 9 C 0.004 3.996 10 C -0.214 4.214 11 C -0.097 4.097 12 C -0.186 4.186 13 C 0.112 3.888 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.417 5.417 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.247 4.247 23 C -0.101 4.101 24 C -0.074 4.074 25 C -0.197 4.197 26 C -0.111 4.111 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.251 15.455 -2.962 15.897 hybrid contribution 0.496 -0.324 0.272 0.652 sum -1.755 15.131 -2.689 15.468 Atomic orbital electron populations 1.20763 0.91409 1.02542 1.02145 1.19700 0.95790 0.92932 0.99437 1.20804 0.94005 0.97195 1.04427 1.20875 0.94081 0.96854 1.00230 1.19948 0.95770 0.92869 1.05058 1.18688 0.92851 0.88316 0.96912 1.20965 0.92667 0.97804 1.03024 1.58773 1.16799 1.17629 1.27554 1.20847 1.00216 0.92738 0.85811 1.18806 0.93910 0.92088 1.16549 1.20480 0.96577 0.93319 0.99291 1.21296 0.97220 0.94211 1.05890 1.17620 0.91517 0.92666 0.87036 1.19600 0.97321 0.90535 1.41731 0.90497 1.25911 0.94254 1.01519 0.92468 1.69827 1.08320 1.35456 1.28060 0.86336 0.78992 0.81481 0.80145 1.19602 1.20019 1.18419 1.20930 0.98412 0.92983 1.12382 1.20340 0.94118 0.95278 1.00374 1.22270 0.86712 1.00100 0.98368 1.22194 1.00479 0.95663 1.01379 1.20482 0.91093 0.97939 1.01633 0.91354 0.91840 0.91524 0.86630 0.86670 0.85719 0.94791 0.91373 0.89563 0.86564 0.90876 0.89137 0.89773 0.91084 0.88274 0.90902 0.91307 0.90976 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 2 C -0.08 -0.98 5.87 -104.75 -0.61 -1.59 16 3 C -0.15 -1.71 9.71 -39.62 -0.38 -2.09 16 4 C -0.10 -1.23 9.63 -39.51 -0.38 -1.61 16 5 C -0.13 -1.83 5.74 -104.38 -0.60 -2.43 16 6 C 0.13 2.01 5.12 -83.85 -0.43 1.58 16 7 C -0.12 -1.83 8.84 -39.22 -0.35 -2.18 16 8 N -0.49 -8.29 4.48 -172.64 -0.77 -9.07 16 9 C 0.13 2.28 4.92 -4.97 -0.02 2.25 16 10 C -0.21 -4.49 4.94 -104.33 -0.52 -5.00 16 11 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 12 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 13 C 0.11 3.01 5.57 -106.82 -0.60 2.41 16 14 C -0.46 -12.18 9.05 -37.75 -0.34 -12.52 16 15 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 16 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 17 N -0.79 -20.34 10.97 55.55 0.61 -19.73 16 18 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 C -0.23 -5.47 9.80 -38.87 -0.38 -5.85 16 23 C -0.08 -1.77 7.81 -39.67 -0.31 -2.08 16 24 C 0.05 0.82 5.63 -3.88 -0.02 0.79 16 25 C -0.16 -2.05 6.03 -26.50 -0.16 -2.21 16 26 C -0.07 -0.88 5.81 -27.81 -0.16 -1.04 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.03 0.59 6.27 -51.93 -0.33 0.27 16 34 H 0.07 1.21 7.45 -51.93 -0.39 0.82 16 35 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 36 H 0.12 3.11 6.18 -52.49 -0.32 2.79 16 37 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 38 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 39 H 0.08 1.60 7.81 -52.49 -0.41 1.19 16 40 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 41 H 0.10 1.70 5.31 -51.93 -0.28 1.42 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.96 6.36 -51.93 -0.33 0.63 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -27.13 357.07 -12.20 -39.33 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.67 Total: 7.86 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: -5.72 Total: -37.29 kcal Atomic # 7 Polarization: -28.63 SS G_CDS: -0.16 Total: -28.79 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.13 -12.20 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657307708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.339 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds