Wall clock time and date at job start Tue Mar 31 2020 09:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38304 * 120.02423 * 2 1 4 4 C 1.38054 * 119.88811 * 180.30606 * 3 2 1 5 5 C 1.38614 * 120.48563 * 359.53276 * 4 3 2 6 6 C 1.38377 * 119.86606 * 0.26346 * 5 4 3 7 7 C 1.37813 * 120.02017 * 179.97438 * 2 1 3 8 8 N 1.39398 * 122.96349 * 180.28810 * 6 5 4 9 9 C 1.46900 * 111.02041 * 105.48869 * 8 6 5 10 10 C 1.50704 * 109.47326 * 167.21408 * 9 8 6 11 11 C 1.38630 * 119.75020 * 269.73663 * 10 9 8 12 12 C 1.37618 * 120.24734 * 179.72598 * 11 10 9 13 13 C 1.40721 * 119.74484 * 0.55687 * 12 11 10 14 14 C 1.41387 * 120.24396 * 179.68753 * 13 12 11 15 15 H 1.08004 * 120.00080 * 155.32255 * 14 13 12 16 16 C 1.39946 * 120.00386 * 335.31260 * 14 13 12 17 17 N 1.30827 * 120.00013 * 342.23550 * 16 14 13 18 18 Si 1.86797 * 120.00179 * 162.23200 * 16 14 13 19 19 H 1.48500 * 109.47070 * 94.66558 * 18 16 14 20 20 H 1.48494 * 109.47474 * 214.66726 * 18 16 14 21 21 H 1.48505 * 109.47358 * 334.67113 * 18 16 14 22 22 C 1.40718 * 119.50626 * 359.71535 * 13 12 11 23 23 C 1.37610 * 119.74751 * 359.97438 * 22 13 12 24 24 C 1.46433 * 113.12590 * 339.93258 * 8 6 5 25 25 C 1.53389 * 108.64756 * 53.36123 * 24 8 6 26 26 C 1.50804 * 118.12189 * 179.97438 * 5 4 3 27 27 H 1.08993 * 109.47190 * 270.02107 * 1 2 3 28 28 H 1.08999 * 109.46888 * 30.02155 * 1 2 3 29 29 H 1.08999 * 109.47256 * 150.01533 * 1 2 3 30 30 H 1.08003 * 120.05725 * 0.06139 * 3 2 1 31 31 H 1.08001 * 119.76059 * 179.76746 * 4 3 2 32 32 H 1.07998 * 119.79017 * 0.05545 * 7 2 1 33 33 H 1.08998 * 109.47568 * 287.21973 * 9 8 6 34 34 H 1.09005 * 109.46725 * 47.22265 * 9 8 6 35 35 H 1.08004 * 119.88114 * 359.97161 * 11 10 9 36 36 H 1.08001 * 120.12922 * 180.27992 * 12 11 10 37 37 H 0.96993 * 119.99926 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.11988 * 179.97438 * 22 13 12 39 39 H 1.07998 * 119.87450 * 180.02562 * 23 22 13 40 40 H 1.08995 * 109.60778 * 293.61618 * 24 8 6 41 41 H 1.09002 * 109.61068 * 173.11048 * 24 8 6 42 42 H 1.09003 * 109.76834 * 172.11834 * 25 24 8 43 43 H 1.09002 * 109.81696 * 51.36055 * 25 24 8 44 44 H 1.09002 * 109.43799 * 284.79888 * 26 5 4 45 45 H 1.09000 * 109.43795 * 44.71815 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1975 0.0000 4 6 3.5796 1.1942 -0.0064 5 6 4.2800 -0.0020 -0.0031 6 6 3.5926 -1.2030 0.0012 7 6 2.1965 -1.1932 0.0005 8 7 4.2310 -2.4422 0.0105 9 6 4.1419 -3.0708 1.3352 10 6 4.5543 -4.5168 1.2339 11 6 3.6005 -5.4873 0.9693 12 6 3.9667 -6.8101 0.8690 13 6 5.3133 -7.1772 1.0479 14 6 5.7002 -8.5338 0.9538 15 1 6.7168 -8.7887 0.6930 16 6 4.7659 -9.5466 1.1986 17 7 3.6585 -9.2739 1.8397 18 14 5.0997 -11.2876 0.6099 19 1 5.7189 -12.0715 1.7087 20 1 3.8221 -11.9268 0.2048 21 1 6.0239 -11.2487 -0.5520 22 6 6.2719 -6.1841 1.3218 23 6 5.8840 -4.8668 1.4112 24 6 5.6205 -2.3768 -0.4468 25 6 6.3572 -1.3105 0.3737 26 6 5.7869 0.0566 -0.0110 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5136 30 1 1.6604 2.1336 0.0010 31 1 4.1179 2.1305 -0.0102 32 1 1.6534 -2.1267 0.0000 33 1 4.8034 -2.5520 2.0289 34 1 3.1156 -3.0104 1.6977 35 1 2.5667 -5.2039 0.8373 36 1 3.2227 -7.5641 0.6583 37 1 3.0108 -9.9757 2.0091 38 1 7.3082 -6.4548 1.4612 39 1 6.6180 -4.1029 1.6209 40 1 5.6458 -2.1078 -1.5027 41 1 6.0993 -3.3453 -0.3019 42 1 7.4230 -1.3424 0.1473 43 1 6.2009 -1.4895 1.4375 44 1 6.1341 0.3274 -1.0081 45 1 6.1245 0.8047 0.7063 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657307708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:41 Heat of formation + Delta-G solvation = 23.312698 kcal Electronic energy + Delta-G solvation = -24466.258588 eV Core-core repulsion = 21218.573364 eV Total energy + Delta-G solvation = -3247.685224 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.62110 -39.53456 -38.07399 -35.78970 -34.82601 -32.68009 -32.33585 -31.21745 -30.42572 -28.71618 -27.82369 -26.02229 -24.50175 -23.35437 -22.87715 -22.81353 -21.62932 -19.97662 -19.22758 -17.42559 -17.20873 -17.09012 -16.59055 -16.10940 -15.79901 -15.62821 -15.26603 -15.04598 -14.73096 -14.55818 -14.29292 -14.20500 -13.99247 -13.74670 -13.54248 -13.34818 -13.16029 -12.91185 -12.89371 -12.74288 -12.64219 -12.26144 -12.24138 -12.10932 -11.96903 -11.71622 -11.60364 -11.32751 -11.24687 -10.99856 -10.16635 -9.38466 -9.34534 -9.25124 -8.67789 -8.63506 -6.32908 0.44936 0.50365 0.95735 1.15308 1.37503 1.47871 1.53657 2.20400 2.63407 2.83027 3.08606 3.75646 3.85652 3.88204 3.99349 4.04596 4.15836 4.21582 4.24873 4.38889 4.45034 4.52386 4.57556 4.59624 4.70209 4.71382 4.76400 4.84040 4.85368 4.96609 4.98335 5.06053 5.10228 5.14982 5.15930 5.25450 5.33735 5.38698 5.44879 5.49165 5.62013 5.71165 5.74156 5.93830 6.01630 6.10237 6.13426 6.28575 6.38872 6.62280 6.71156 6.94687 7.04516 8.33167 Molecular weight = 307.16amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.003174 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.071694 B = 8818.507587 C = 9777.702340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.102 4.102 5 C -0.142 4.142 6 C 0.102 3.898 7 C -0.146 4.146 8 N -0.506 5.506 9 C 0.138 3.862 10 C -0.198 4.198 11 C -0.086 4.086 12 C -0.190 4.190 13 C 0.082 3.918 14 C -0.502 4.502 15 H 0.075 0.925 16 C 0.035 3.965 17 N -0.825 5.825 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.259 1.259 22 C -0.241 4.241 23 C -0.076 4.076 24 C 0.051 3.949 25 C -0.152 4.152 26 C -0.071 4.071 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.287 0.713 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 18.654 -2.987 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.084 4.084 3 C -0.160 4.160 4 C -0.121 4.121 5 C -0.145 4.145 6 C 0.006 3.994 7 C -0.166 4.166 8 N -0.222 5.222 9 C 0.014 3.986 10 C -0.199 4.199 11 C -0.104 4.104 12 C -0.210 4.210 13 C 0.080 3.920 14 C -0.531 4.531 15 H 0.093 0.907 16 C -0.180 4.180 17 N -0.451 5.451 18 Si 0.801 3.199 19 H -0.186 1.186 20 H -0.191 1.191 21 H -0.183 1.183 22 C -0.261 4.261 23 C -0.094 4.094 24 C -0.076 4.076 25 C -0.190 4.190 26 C -0.108 4.108 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.132 0.868 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.958 18.202 -3.194 18.584 hybrid contribution 0.345 -0.929 0.339 1.048 sum -1.613 17.273 -2.854 17.582 Atomic orbital electron populations 1.20807 0.89629 1.03384 1.02911 1.20026 0.97235 0.92560 0.98577 1.21203 0.94244 0.97920 1.02682 1.21237 0.94464 0.97356 0.99021 1.20220 0.96962 0.92703 1.04630 1.18794 0.93166 0.88297 0.99176 1.21038 0.92779 0.98268 1.04478 1.58618 1.17809 1.19194 1.26577 1.20658 1.00157 0.90611 0.87192 1.19169 0.93440 0.93695 1.13614 1.20685 0.97735 0.92893 0.99137 1.21231 0.96969 0.94905 1.07880 1.17950 0.92253 0.93608 0.88172 1.19843 0.97906 0.91451 1.43906 0.90708 1.26757 0.93742 1.05567 0.91909 1.69884 1.09279 1.37088 1.28881 0.85221 0.79044 0.76015 0.79604 1.18636 1.19091 1.18301 1.21145 0.98493 0.93781 1.12682 1.20607 0.94893 0.94983 0.98955 1.22247 0.86324 0.99948 0.99065 1.22133 1.01306 0.95508 1.00093 1.20521 0.89783 0.97525 1.02934 0.90539 0.89830 0.91894 0.83734 0.83821 0.87224 0.93894 0.91576 0.88473 0.88505 0.90198 0.88467 0.86753 0.90844 0.90443 0.89026 0.92321 0.89683 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 10.01 71.24 0.71 -1.22 16 2 C -0.08 -1.94 5.87 -19.95 -0.12 -2.05 16 3 C -0.14 -2.85 9.71 22.24 0.22 -2.63 16 4 C -0.10 -2.11 9.63 22.32 0.21 -1.89 16 5 C -0.14 -3.54 5.74 -19.71 -0.11 -3.66 16 6 C 0.10 3.07 5.12 38.30 0.20 3.26 16 7 C -0.15 -4.22 8.84 22.50 0.20 -4.02 16 8 N -0.51 -16.85 4.48 -700.11 -3.14 -19.99 16 9 C 0.14 4.90 4.92 85.56 0.42 5.32 16 10 C -0.20 -8.45 4.94 -19.67 -0.10 -8.54 16 11 C -0.09 -4.10 9.67 22.22 0.21 -3.89 16 12 C -0.19 -10.31 8.70 22.73 0.20 -10.11 16 13 C 0.08 4.54 5.57 -21.29 -0.12 4.42 16 14 C -0.50 -27.61 9.05 23.46 0.21 -27.39 16 15 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 16 C 0.04 1.80 5.14 85.26 0.44 2.24 16 17 N -0.83 -44.10 10.97 21.83 0.24 -43.86 16 18 Si 0.98 38.89 29.59 68.60 2.03 40.92 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 22 C -0.24 -11.90 9.80 22.73 0.22 -11.68 16 23 C -0.08 -3.26 7.81 22.22 0.17 -3.09 16 24 C 0.05 1.54 5.63 86.52 0.49 2.02 16 25 C -0.15 -3.56 6.03 30.74 0.19 -3.38 16 26 C -0.07 -1.44 5.81 29.90 0.17 -1.27 16 27 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.11 8.09 -2.39 -0.02 1.10 16 29 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 30 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.11 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.04 1.45 6.27 -2.39 -0.01 1.43 16 34 H 0.07 2.36 7.45 -2.38 -0.02 2.34 16 35 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.10 5.53 6.18 -2.91 -0.02 5.51 16 37 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 38 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.11 4.18 7.81 -2.91 -0.02 4.16 16 40 H 0.07 2.13 8.11 -2.39 -0.02 2.11 16 41 H 0.08 2.62 5.31 -2.39 -0.01 2.61 16 42 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.50 6.36 -2.39 -0.02 1.49 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -61.27 357.07 3.93 -57.34 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.97 Total: 33.15 kcal Atomic # 6 Polarization: -71.37 SS G_CDS: 3.82 Total: -67.55 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -2.90 Total: -63.85 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -61.27 3.93 -57.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657307708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.654 kcal (2) G-P(sol) polarization free energy of solvation -61.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds