Wall clock time and date at job start Tue Mar 31 2020 10:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35648 * 116.99896 * 2 1 4 4 C 1.39349 * 120.54396 * 0.24847 * 3 2 1 5 5 C 1.38292 * 118.44010 * 180.20262 * 4 3 2 6 6 C 1.50706 * 120.27580 * 179.80784 * 5 4 3 7 7 C 1.38770 * 119.44758 * 359.52518 * 5 4 3 8 8 N 1.31376 * 121.06674 * 0.25510 * 7 5 4 9 9 C 1.32864 * 121.69492 * 0.02562 * 8 7 5 10 10 C 1.47822 * 119.78189 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00050 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00224 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00421 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47296 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.47232 * 54.99773 * 14 13 12 16 16 C 1.53002 * 109.47082 * 294.99952 * 14 13 12 17 17 C 1.53004 * 109.46780 * 175.00313 * 14 13 12 18 18 N 1.46500 * 109.46748 * 185.00138 * 17 14 13 19 19 C 1.36936 * 120.00234 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99510 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00455 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99922 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00228 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47039 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46747 * 120.00042 * 23 21 19 26 26 H 1.48499 * 109.47325 * 240.00206 * 23 21 19 27 27 H 1.08998 * 109.47627 * 300.00710 * 1 2 3 28 28 H 1.09005 * 109.46966 * 60.00410 * 1 2 3 29 29 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.77549 * 0.02562 * 4 3 2 31 31 H 1.09001 * 109.46953 * 269.71586 * 6 5 4 32 32 H 1.09000 * 109.47318 * 29.71184 * 6 5 4 33 33 H 1.09000 * 109.47161 * 149.71815 * 6 5 4 34 34 H 1.07998 * 119.46721 * 180.28013 * 7 5 4 35 35 H 0.97006 * 119.99614 * 0.02562 * 12 10 9 36 36 H 1.09003 * 109.46600 * 300.00756 * 13 12 10 37 37 H 1.08998 * 109.46704 * 59.99820 * 13 12 10 38 38 H 1.09000 * 109.47145 * 60.00273 * 16 14 13 39 39 H 1.08993 * 109.47005 * 179.97438 * 16 14 13 40 40 H 1.09001 * 109.46941 * 299.99999 * 16 14 13 41 41 H 1.09002 * 109.46650 * 304.99257 * 17 14 13 42 42 H 1.08996 * 109.47532 * 65.00041 * 17 14 13 43 43 H 0.97007 * 120.00003 * 359.97438 * 18 17 14 44 44 H 0.97001 * 119.99865 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3845 0.0052 5 6 1.9695 3.5928 0.0007 6 6 1.2019 4.8897 0.0017 7 6 3.3572 3.6012 0.0012 8 7 4.0419 2.4800 0.0009 9 6 3.4410 1.2950 -0.0004 10 6 4.2531 0.0599 -0.0013 11 8 3.7074 -1.0263 -0.0020 12 7 5.5986 0.1380 -0.0013 13 6 6.4035 -1.0861 -0.0015 14 6 7.8890 -0.7197 -0.0008 15 1 8.1003 -0.0608 0.8414 16 6 8.2387 -0.0051 -1.3077 17 6 8.7282 -1.9929 0.1245 18 7 10.1436 -1.6349 0.2454 19 6 11.0899 -2.6166 0.3708 20 1 10.7928 -3.6549 0.3811 21 6 12.4311 -2.2774 0.4848 22 7 12.7932 -1.0121 0.4727 23 14 13.7220 -3.6167 0.6566 24 1 13.0606 -4.9463 0.6432 25 1 14.6796 -3.5293 -0.4750 26 1 14.4519 -3.4393 1.9376 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 0.2174 2.3528 0.0097 31 1 1.0172 5.2033 -1.0258 32 1 0.2507 4.7485 0.5150 33 1 1.7825 5.6552 0.5164 34 1 3.8828 4.5446 0.0023 35 1 6.0341 1.0048 -0.0003 36 1 6.1737 -1.6722 0.8883 37 1 6.1738 -1.6717 -0.8917 38 1 7.6408 0.9019 -1.3970 39 1 9.2968 0.2563 -1.3070 40 1 8.0273 -0.6640 -2.1499 41 1 8.4169 -2.5475 1.0098 42 1 8.5842 -2.6117 -0.7611 43 1 10.4105 -0.7023 0.2365 44 1 13.7305 -0.7751 0.5520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753618840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:39 Heat of formation + Delta-G solvation = -35.239224 kcal Electronic energy + Delta-G solvation = -24503.240969 eV Core-core repulsion = 20842.167480 eV Total energy + Delta-G solvation = -3661.073489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.25882 -39.16548 -38.57630 -36.67864 -34.35427 -34.05435 -32.30534 -31.33461 -29.99740 -28.59655 -27.73571 -26.28290 -25.21431 -23.82808 -22.91806 -22.21165 -20.65929 -19.93637 -18.34655 -17.77806 -17.57284 -16.89462 -16.34567 -15.69899 -15.46260 -15.20951 -14.59360 -14.47278 -14.46274 -14.10865 -14.06572 -13.65620 -13.53402 -13.16929 -13.09053 -12.89432 -12.64131 -12.48164 -12.16951 -11.95049 -11.83801 -11.83042 -10.99121 -10.86193 -10.62651 -10.48040 -10.39220 -10.25906 -9.98015 -9.94720 -9.75224 -9.59506 -8.93994 -8.82706 -8.66487 -6.86006 -5.71770 -2.99732 0.33635 0.85690 2.67526 2.78552 3.17513 3.47292 3.53006 3.55289 3.62466 3.96524 4.11647 4.33427 4.48665 4.54119 4.64602 4.65563 4.73703 5.00828 5.02900 5.06017 5.14226 5.17946 5.33431 5.42473 5.49315 5.52030 5.63493 5.66812 5.93609 5.98403 6.07755 6.10506 6.20582 6.37746 6.49599 6.62790 6.74933 6.82595 6.86825 6.96363 7.36827 7.72229 7.76237 8.32887 8.47558 9.58720 10.16970 10.51890 11.51409 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.002319 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.475062 B =12070.366405 C =12897.379760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.142 3.858 4 C -0.180 4.180 5 C -0.075 4.075 6 C -0.115 4.115 7 C 0.058 3.942 8 N -0.415 5.415 9 C 0.039 3.961 10 C 0.568 3.432 11 O -0.520 6.520 12 N -0.707 5.707 13 C 0.127 3.873 14 C -0.110 4.110 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.161 3.839 18 N -0.731 5.731 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.145 0.855 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.165 0.835 35 H 0.409 0.591 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.093 12.939 -1.853 31.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.091 3.909 4 C -0.207 4.207 5 C -0.077 4.077 6 C -0.172 4.172 7 C -0.103 4.103 8 N -0.126 5.126 9 C -0.100 4.100 10 C 0.353 3.647 11 O -0.396 6.396 12 N -0.359 5.359 13 C 0.003 3.997 14 C -0.129 4.129 15 H 0.095 0.905 16 C -0.199 4.199 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.163 0.837 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.182 0.818 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.218 0.782 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -28.401 11.702 -1.839 30.772 hybrid contribution -0.118 0.263 0.107 0.307 sum -28.519 11.965 -1.732 30.975 Atomic orbital electron populations 1.23226 0.78549 1.04768 1.01137 1.86441 1.20893 1.24452 1.86269 1.20047 0.92276 0.85671 0.92929 1.21616 1.00905 0.91250 1.06896 1.21005 0.95273 0.95781 0.95648 1.20825 0.99903 0.93349 1.03154 1.22628 0.90566 0.96466 1.00646 1.67624 1.39726 0.97362 1.07850 1.20727 0.88600 0.92930 1.07751 1.17571 0.82351 0.87164 0.77658 1.90831 1.71787 1.27539 1.49411 1.45879 1.05392 1.10963 1.73710 1.21447 0.89875 0.85953 1.02404 1.21547 0.92567 0.99536 0.99280 0.90469 1.21789 1.02435 0.99154 0.96519 1.20580 0.85395 0.92799 0.97984 1.42358 0.99863 1.06798 1.88532 1.19292 0.87121 0.88737 1.41542 0.91108 1.24737 0.97108 0.96170 1.03188 1.69671 1.15885 1.14952 1.57847 0.86108 0.81901 0.80961 0.77199 1.20560 1.21930 1.21927 0.92526 0.92526 0.87541 0.83699 0.90176 0.91027 0.90414 0.81763 0.75480 0.91266 0.91252 0.93698 0.91210 0.92897 0.96109 0.95976 0.78184 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.11 16 2 O -0.27 -3.28 8.56 -40.59 -0.35 -3.62 16 3 C 0.14 1.64 6.71 -38.55 -0.26 1.38 16 4 C -0.18 -1.44 8.80 -39.15 -0.34 -1.79 16 5 C -0.07 -0.53 5.90 -104.40 -0.62 -1.14 16 6 C -0.12 -0.41 10.03 36.01 0.36 -0.05 16 7 C 0.06 0.50 10.85 -17.55 -0.19 0.31 16 8 N -0.41 -4.86 9.54 -9.71 -0.09 -4.96 16 9 C 0.04 0.52 6.76 -82.88 -0.56 -0.04 16 10 C 0.57 8.92 7.80 -12.34 -0.10 8.82 16 11 O -0.52 -9.60 15.14 -16.63 -0.25 -9.85 16 12 N -0.71 -10.23 5.27 -61.26 -0.32 -10.56 16 13 C 0.13 1.95 5.06 -4.04 -0.02 1.93 16 14 C -0.11 -1.84 2.46 -90.62 -0.22 -2.06 16 15 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 16 C -0.14 -2.28 8.94 37.16 0.33 -1.94 16 17 C 0.16 3.33 5.65 -4.04 -0.02 3.30 16 18 N -0.73 -18.85 5.33 -59.91 -0.32 -19.17 16 19 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 22 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 23 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H 0.06 0.27 7.69 -51.93 -0.40 -0.13 16 28 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 29 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.15 0.73 6.46 -52.48 -0.34 0.39 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.19 8.09 -51.93 -0.42 -0.23 16 33 H 0.08 0.20 8.09 -51.93 -0.42 -0.22 16 34 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.41 5.41 6.98 -40.82 -0.28 5.13 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.62 7.18 -51.93 -0.37 0.24 16 39 H 0.07 1.28 7.18 -51.93 -0.37 0.90 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.38 10.30 6.85 -40.82 -0.28 10.02 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -35.24 367.62 -7.63 -42.87 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.64 Total: 7.50 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -0.89 Total: 2.36 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.01 Total: -62.61 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.60 Total: -13.48 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.24 -7.63 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753618840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.627 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds