Wall clock time and date at job start Tue Mar 31 2020 10:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30126 * 126.70711 * 2 1 4 4 O 1.20887 * 111.97947 * 179.85823 * 3 2 1 5 5 C 1.34634 * 111.46874 * 0.42465 * 4 3 2 6 6 C 1.47513 * 126.94356 * 179.72770 * 5 4 3 7 7 O 1.21582 * 120.00341 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00013 * 0.02562 * 6 5 4 9 9 C 1.48114 * 127.03592 * 179.71043 * 8 6 5 10 10 C 1.54592 * 103.42459 * 219.28742 * 9 8 6 11 11 H 1.09001 * 110.58164 * 81.16890 * 10 9 8 12 12 C 1.53003 * 110.99218 * 204.37279 * 10 9 8 13 13 N 1.46502 * 109.46874 * 288.65212 * 12 10 9 14 14 C 1.36941 * 119.99611 * 179.97438 * 13 12 10 15 15 H 1.07993 * 120.00098 * 0.02562 * 14 13 12 16 16 C 1.38816 * 119.99788 * 179.97438 * 14 13 12 17 17 N 1.31611 * 120.00118 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99927 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47091 * 90.00174 * 18 16 14 20 20 H 1.48489 * 109.47334 * 209.99902 * 18 16 14 21 21 H 1.48494 * 109.47301 * 330.00340 * 18 16 14 22 22 C 1.54621 * 102.91427 * 322.86475 * 10 9 8 23 23 H 1.08997 * 110.32756 * 262.81412 * 22 10 9 24 24 C 1.52994 * 110.41704 * 140.63167 * 22 10 9 25 25 C 1.47482 * 127.03195 * 0.02562 * 8 6 5 26 26 C 1.36825 * 106.11683 * 359.74539 * 5 4 3 27 27 C 1.50697 * 128.07814 * 179.97438 * 26 5 4 28 28 H 1.08999 * 109.47015 * 269.68627 * 1 2 3 29 29 H 1.09000 * 109.46646 * 29.67780 * 1 2 3 30 30 H 1.09000 * 109.47248 * 149.68497 * 1 2 3 31 31 H 1.09003 * 110.66273 * 337.76823 * 9 8 6 32 32 H 1.09000 * 110.66414 * 100.88314 * 9 8 6 33 33 H 1.08997 * 109.46646 * 48.64912 * 12 10 9 34 34 H 1.08994 * 109.47254 * 168.65086 * 12 10 9 35 35 H 0.97001 * 120.00072 * 359.97438 * 13 12 10 36 36 H 0.97004 * 120.00124 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.47596 * 302.88218 * 24 22 10 38 38 H 1.09007 * 109.47061 * 62.88068 * 24 22 10 39 39 H 1.09003 * 109.47411 * 182.87861 * 24 22 10 40 40 H 1.08999 * 109.91635 * 273.87592 * 25 8 6 41 41 H 1.08998 * 109.91500 * 34.96879 * 25 8 6 42 42 H 1.08996 * 109.47056 * 270.01396 * 27 26 5 43 43 H 1.08997 * 109.47252 * 30.02157 * 27 26 5 44 44 H 1.08998 * 109.46791 * 150.02279 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2849 1.0432 0.0000 4 8 3.4540 0.7359 0.0028 5 6 3.6121 -0.6011 -0.0042 6 6 4.8870 -1.3431 -0.0091 7 8 4.8828 -2.5589 -0.0158 8 7 6.0565 -0.6734 -0.0062 9 6 7.4183 -1.2561 -0.0042 10 6 8.2043 -0.3283 0.9504 11 1 8.0174 -0.6005 1.9892 12 6 9.7026 -0.3684 0.6433 13 7 10.2524 -1.6603 1.0614 14 6 11.5838 -1.9274 0.8841 15 1 12.2285 -1.1856 0.4365 16 6 12.1049 -3.1514 1.2808 17 7 13.3846 -3.4080 1.1109 18 14 10.9902 -4.4337 2.0571 19 1 10.4197 -5.3014 0.9955 20 1 11.7757 -5.2634 3.0055 21 1 9.8891 -3.7557 2.7871 22 6 7.6181 1.0675 0.6362 23 1 8.2593 1.5976 -0.0680 24 6 7.4564 1.8803 1.9222 25 6 6.2422 0.7897 0.0023 26 6 2.3513 -1.1326 -0.0063 27 6 1.9557 -2.5867 -0.0141 28 1 -0.3633 -0.0056 1.0276 29 1 -0.3632 0.8929 -0.5088 30 1 -0.3634 -0.8871 -0.5187 31 1 7.3998 -2.2758 0.3805 32 1 7.8495 -1.2292 -1.0049 33 1 9.8575 -0.2370 -0.4276 34 1 10.2059 0.4329 1.1842 35 1 9.6735 -2.3265 1.4638 36 1 13.7486 -4.2634 1.3878 37 1 6.8234 1.3331 2.6209 38 1 8.4351 2.0467 2.3724 39 1 6.9954 2.8404 1.6898 40 1 6.2194 1.1728 -1.0179 41 1 5.4564 1.2603 0.5931 42 1 1.8598 -2.9316 -1.0436 43 1 2.7192 -3.1738 0.4962 44 1 1.0017 -2.7064 0.4994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106295334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:31 Heat of formation + Delta-G solvation = 36.321650 kcal Electronic energy + Delta-G solvation = -25605.825360 eV Core-core repulsion = 21947.854983 eV Total energy + Delta-G solvation = -3657.970377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.28780 -40.23115 -38.21223 -35.77947 -34.87553 -33.18671 -32.73980 -31.56460 -29.85647 -29.10281 -28.52631 -26.60847 -25.96696 -23.63286 -22.41310 -22.08730 -21.07770 -20.12155 -19.73143 -18.12584 -17.95728 -17.38845 -16.28453 -16.23969 -15.69901 -14.74435 -14.45477 -14.33064 -14.01192 -13.93753 -13.77681 -13.53232 -13.46375 -13.32727 -13.22908 -13.04801 -12.77534 -12.70968 -12.47879 -12.23759 -12.07010 -11.53501 -11.43069 -11.40885 -10.94953 -10.67910 -10.57952 -10.44000 -10.31841 -10.24528 -10.11458 -9.75451 -9.58990 -8.91817 -8.83792 -7.24878 -5.77099 -3.13192 0.54023 1.70225 2.30567 2.78984 2.89896 3.39461 3.42916 3.47540 3.70454 4.02179 4.31570 4.46232 4.57928 4.59824 4.63800 4.77705 4.84307 5.04350 5.14312 5.19175 5.24629 5.32499 5.35709 5.41461 5.44288 5.49267 5.53289 5.59022 5.64209 5.65965 5.70381 5.86856 5.93692 5.94232 6.00812 6.09010 6.13263 6.32342 6.59472 6.69295 7.22598 7.64411 7.87559 7.98085 8.41605 9.20249 9.92752 10.11642 11.41141 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.003362 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.852349 B = 8325.200003 C = 9346.160602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.010 3.990 3 N -0.347 5.347 4 O 0.117 5.883 5 C -0.083 4.083 6 C 0.619 3.381 7 O -0.511 6.511 8 N -0.607 5.607 9 C 0.113 3.887 10 C -0.108 4.108 11 H 0.085 0.915 12 C 0.170 3.830 13 N -0.757 5.757 14 C -0.245 4.245 15 H 0.091 0.909 16 C 0.006 3.994 17 N -0.934 5.934 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.097 4.097 23 H 0.093 0.907 24 C -0.143 4.143 25 C 0.099 3.901 26 C -0.120 4.120 27 C -0.086 4.086 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.032 0.968 34 H 0.033 0.967 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.917 9.767 -2.235 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 N -0.049 5.049 4 O 0.045 5.955 5 C -0.148 4.148 6 C 0.405 3.595 7 O -0.387 6.387 8 N -0.340 5.340 9 C -0.008 4.008 10 C -0.128 4.128 11 H 0.103 0.897 12 C 0.042 3.958 13 N -0.403 5.403 14 C -0.375 4.375 15 H 0.108 0.892 16 C -0.190 4.190 17 N -0.581 5.581 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.117 4.117 23 H 0.111 0.889 24 C -0.200 4.200 25 C -0.024 4.024 26 C -0.125 4.125 27 C -0.143 4.143 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.988 10.398 -2.311 28.086 hybrid contribution -0.699 -1.603 0.565 1.837 sum -26.687 8.796 -1.746 28.153 Atomic orbital electron populations 1.20195 0.85305 1.04067 1.03652 1.23510 0.99228 0.88084 1.03988 1.73712 0.89507 1.24339 1.17340 1.85022 1.21091 1.22021 1.67333 1.23953 0.96817 0.83804 1.10274 1.16045 0.79991 0.85642 0.77838 1.90868 1.85342 1.11498 1.51026 1.48704 1.05808 1.08541 1.70929 1.22653 0.78503 0.98830 1.00794 1.22605 0.96637 0.93513 0.99998 0.89701 1.20607 0.88194 0.89263 0.97725 1.42734 1.07988 1.14179 1.75349 1.19033 0.83733 1.00360 1.34383 0.89160 1.24667 0.95664 0.97603 1.01088 1.69698 1.11374 1.23965 1.53098 0.86580 0.80276 0.82433 0.79448 1.20913 1.21710 1.20332 1.22078 0.94775 0.96551 0.98299 0.88877 1.21845 1.02462 0.99277 0.96412 1.22439 0.98510 0.79831 1.01602 1.21479 0.90219 0.98630 1.02178 1.20333 1.02641 0.87844 1.03457 0.89910 0.90234 0.89743 0.89310 0.89687 0.95054 0.94874 0.80631 0.93037 0.92715 0.91632 0.92444 0.90792 0.89987 0.90133 0.89020 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.39 36.01 0.37 -0.08 16 2 C 0.01 0.10 7.31 -82.16 -0.60 -0.50 16 3 N -0.35 -4.10 12.04 33.52 0.40 -3.70 16 4 O 0.12 1.40 8.67 15.57 0.14 1.53 16 5 C -0.08 -1.04 7.09 -36.31 -0.26 -1.29 16 6 C 0.62 8.83 7.89 -12.48 -0.10 8.73 16 7 O -0.51 -8.58 15.32 5.29 0.08 -8.50 16 8 N -0.61 -8.03 3.29 -171.22 -0.56 -8.59 16 9 C 0.11 1.65 6.44 -2.32 -0.01 1.63 16 10 C -0.11 -1.53 2.60 -88.93 -0.23 -1.76 16 11 H 0.08 1.27 7.86 -51.93 -0.41 0.87 16 12 C 0.17 3.02 5.59 -4.04 -0.02 3.00 16 13 N -0.76 -17.45 5.33 -59.91 -0.32 -17.77 16 14 C -0.25 -6.85 10.47 -15.06 -0.16 -7.01 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 16 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 17 N -0.93 -29.29 13.97 55.49 0.78 -28.52 16 18 Si 0.88 22.26 27.73 -169.99 -4.71 17.54 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 22 C -0.10 -1.05 3.17 -89.24 -0.28 -1.33 16 23 H 0.09 0.92 7.85 -51.93 -0.41 0.52 16 24 C -0.14 -1.39 8.90 37.15 0.33 -1.06 16 25 C 0.10 1.04 5.99 -2.98 -0.02 1.03 16 26 C -0.12 -1.32 6.36 -103.99 -0.66 -1.98 16 27 C -0.09 -0.77 9.86 36.00 0.36 -0.41 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 1.46 7.85 -51.93 -0.41 1.05 16 32 H 0.08 1.22 7.95 -51.93 -0.41 0.80 16 33 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.36 8.25 5.53 -40.82 -0.23 8.02 16 36 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.82 5.82 -51.93 -0.30 0.52 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.99 6.73 -51.93 -0.35 0.64 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -33.25 360.03 -6.91 -40.16 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.75 Total: 3.38 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.38 Total: -0.97 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.30 Total: -58.58 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.22 Total: -6.96 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.25 -6.91 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106295334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.479 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds