Wall clock time and date at job start Tue Mar 31 2020 09:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30010 * 127.33550 * 2 1 4 4 O 1.20663 * 112.29796 * 179.83776 * 3 2 1 5 5 C 1.33491 * 113.15665 * 0.45170 * 4 3 2 6 6 C 1.37353 * 106.34192 * 359.73353 * 5 4 3 7 7 C 1.47399 * 128.56480 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00444 * 132.23807 * 7 6 5 9 9 N 1.34783 * 119.99882 * 312.24935 * 7 6 5 10 10 C 1.46928 * 120.62906 * 184.01440 * 9 7 6 11 11 C 1.53619 * 108.54472 * 126.36314 * 10 9 7 12 12 C 1.53044 * 109.24152 * 54.85738 * 11 10 9 13 13 C 1.52996 * 109.45766 * 178.49139 * 12 11 10 14 14 H 1.09006 * 109.47405 * 60.06437 * 13 12 11 15 15 C 1.53004 * 109.46920 * 180.02562 * 13 12 11 16 16 N 1.46499 * 109.47371 * 300.06535 * 13 12 11 17 17 C 1.36940 * 120.00250 * 155.00242 * 16 13 12 18 18 H 1.08002 * 119.99765 * 359.97438 * 17 16 13 19 19 C 1.38808 * 119.99877 * 180.02562 * 17 16 13 20 20 N 1.31626 * 120.00184 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99871 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47425 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47446 * 119.99695 * 21 19 17 24 24 H 1.48506 * 109.46881 * 239.99688 * 21 19 17 25 25 C 1.53039 * 109.53328 * 298.50621 * 12 11 10 26 26 C 1.46925 * 120.63116 * 4.28351 * 9 7 6 27 27 H 1.09004 * 109.47223 * 269.68247 * 1 2 3 28 28 H 1.09000 * 109.47017 * 29.68263 * 1 2 3 29 29 H 1.09003 * 109.47095 * 149.68689 * 1 2 3 30 30 H 1.08006 * 126.82717 * 179.75358 * 5 4 3 31 31 H 1.09005 * 109.58042 * 246.19752 * 10 9 7 32 32 H 1.09004 * 109.58637 * 6.61877 * 10 9 7 33 33 H 1.09004 * 109.63595 * 294.86119 * 11 10 9 34 34 H 1.09000 * 109.45916 * 174.73849 * 11 10 9 35 35 H 1.08994 * 109.46007 * 58.52908 * 12 11 10 36 36 H 1.08999 * 109.47125 * 299.99770 * 15 13 12 37 37 H 1.08998 * 109.47174 * 60.00106 * 15 13 12 38 38 H 1.09006 * 109.47031 * 180.02562 * 15 13 12 39 39 H 0.97002 * 119.99731 * 334.99758 * 16 13 12 40 40 H 0.96993 * 119.99691 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.50543 * 301.41520 * 25 12 11 42 42 H 1.09004 * 109.49512 * 181.31456 * 25 12 11 43 43 H 1.08995 * 109.58681 * 353.37936 * 26 9 7 44 44 H 1.09003 * 109.58221 * 113.80279 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7206 0.0032 5 6 3.6493 -0.6009 -0.0038 6 6 2.3991 -1.1696 -0.0064 7 6 2.0399 -2.5992 -0.0143 8 8 1.2056 -3.0209 0.7634 9 7 2.6365 -3.4391 -0.8834 10 6 2.2271 -4.8479 -0.9638 11 6 1.8814 -5.1736 -2.4247 12 6 3.0715 -4.8134 -3.3170 13 6 2.7466 -5.1708 -4.7687 14 1 1.8684 -4.6122 -5.0927 15 6 3.9364 -4.8114 -5.6610 16 7 2.4761 -6.6071 -4.8693 17 6 1.6918 -7.0868 -5.8842 18 1 1.2722 -6.4062 -6.6103 19 6 1.4351 -8.4477 -5.9791 20 7 1.9460 -9.2771 -5.0939 21 14 0.3658 -9.1021 -7.3639 22 1 -0.0819 -7.9737 -8.2192 23 1 1.1483 -10.0634 -8.1816 24 1 -0.8197 -9.7893 -6.7914 25 6 3.3538 -3.3130 -3.2123 26 6 3.7125 -2.9647 -1.7643 27 1 -0.3634 -0.0057 1.0277 28 1 -0.3633 0.8928 -0.5089 29 1 -0.3633 -0.8872 -0.5187 30 1 4.5966 -1.1196 -0.0065 31 1 3.0449 -5.4857 -0.6279 32 1 1.3520 -5.0106 -0.3346 33 1 1.0087 -4.5973 -2.7318 34 1 1.6657 -6.2380 -2.5182 35 1 3.9499 -5.3717 -2.9936 36 1 4.1369 -3.7426 -5.5861 37 1 4.8149 -5.3695 -5.3373 38 1 3.7048 -5.0656 -6.6953 39 1 2.8526 -7.2184 -4.2170 40 1 1.7669 -10.2280 -5.1605 41 1 2.4674 -2.7540 -3.5120 42 1 4.1866 -3.0530 -3.8659 43 1 3.8177 -1.8845 -1.6635 44 1 4.6488 -3.4521 -1.4924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753278564.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:15 Heat of formation + Delta-G solvation = 33.219294 kcal Electronic energy + Delta-G solvation = -25796.979252 eV Core-core repulsion = 22138.874347 eV Total energy + Delta-G solvation = -3658.104905 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.19855 -40.23835 -37.97854 -35.51652 -34.79974 -33.12287 -32.49911 -30.92284 -30.73904 -29.00240 -28.29855 -26.10336 -24.32728 -23.80981 -22.80760 -21.55473 -21.19818 -19.88871 -19.42752 -18.09569 -17.83821 -17.21491 -16.80418 -16.21792 -15.38911 -14.97443 -14.67673 -14.21200 -13.94519 -13.86114 -13.64242 -13.57582 -13.49244 -13.26773 -12.87381 -12.78766 -12.57746 -12.29363 -12.11556 -11.70043 -11.56333 -11.24701 -11.06324 -10.90469 -10.78846 -10.41995 -10.31230 -10.20076 -10.17230 -10.15591 -9.87227 -9.79470 -9.59522 -8.93448 -8.70781 -6.96727 -5.78581 -3.06605 0.88932 1.55490 2.42003 2.71778 3.00726 3.41630 3.47822 3.49582 3.76463 4.01373 4.38897 4.55633 4.65165 4.70798 4.92211 4.99398 5.05541 5.17219 5.25910 5.26992 5.33718 5.40086 5.42126 5.52338 5.59300 5.72166 5.80550 5.85663 5.89256 6.00788 6.04940 6.10499 6.27809 6.30926 6.43804 6.52878 6.62336 6.77426 6.90826 7.08639 7.21372 7.69439 7.89608 7.95345 8.40401 9.51789 10.09484 10.44071 11.44129 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.023849 B = 0.003067 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.767453 B = 9127.369770 C = 9404.910203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.063 3.937 3 N -0.358 5.358 4 O 0.097 5.903 5 C -0.016 4.016 6 C -0.241 4.241 7 C 0.593 3.407 8 O -0.530 6.530 9 N -0.597 5.597 10 C 0.112 3.888 11 C -0.122 4.122 12 C -0.090 4.090 13 C 0.178 3.822 14 H 0.044 0.956 15 C -0.166 4.166 16 N -0.723 5.723 17 C -0.235 4.235 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.129 4.129 26 C 0.097 3.903 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.227 0.773 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 17.838 10.169 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 N -0.065 5.065 4 O 0.037 5.963 5 C -0.098 4.098 6 C -0.249 4.249 7 C 0.379 3.621 8 O -0.407 6.407 9 N -0.330 5.330 10 C -0.009 4.009 11 C -0.160 4.160 12 C -0.109 4.109 13 C 0.068 3.932 14 H 0.062 0.938 15 C -0.226 4.226 16 N -0.364 5.364 17 C -0.366 4.366 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.167 4.167 26 C -0.025 4.025 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.243 0.757 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.518 18.880 10.426 22.036 hybrid contribution -0.280 -1.588 -0.719 1.765 sum 4.238 17.292 9.708 20.279 Atomic orbital electron populations 1.20218 0.84972 1.04066 1.04084 1.24828 0.98871 0.86234 0.99946 1.73658 0.89263 1.23501 1.20060 1.84565 1.21500 1.23010 1.67244 1.26404 1.00137 0.83820 0.99436 1.22342 0.93175 0.95735 1.13603 1.16921 0.81229 0.83221 0.80695 1.90813 1.33418 1.77136 1.39307 1.48058 1.36890 1.10869 1.37194 1.21909 1.01230 0.79014 0.98757 1.21977 0.98159 1.03819 0.92018 1.21388 0.98190 0.94154 0.97205 1.20209 0.94999 0.87224 0.90781 0.93774 1.22499 1.00197 0.98408 1.01503 1.42414 1.59892 1.00849 1.33248 1.19262 1.22080 0.91101 1.04196 0.91294 1.24708 1.01197 0.96102 0.98941 1.69660 1.49135 1.02538 1.36824 0.86167 0.79957 0.78718 0.81654 1.20637 1.21955 1.21914 1.22014 1.02461 0.97569 0.94667 1.22050 0.89804 0.99890 0.90803 0.89432 0.90111 0.89584 0.75673 0.91131 0.89052 0.91951 0.88788 0.91278 0.94369 0.93574 0.93015 0.78322 0.93613 0.91585 0.90154 0.90080 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.49 36.00 0.38 -0.34 16 2 C 0.06 0.72 7.59 -79.77 -0.61 0.11 16 3 N -0.36 -4.07 12.01 34.78 0.42 -3.65 16 4 O 0.10 0.92 11.06 18.66 0.21 1.13 16 5 C -0.02 -0.12 10.02 30.41 0.30 0.18 16 6 C -0.24 -2.63 5.53 -102.90 -0.57 -3.20 16 7 C 0.59 7.75 7.66 -12.53 -0.10 7.65 16 8 O -0.53 -8.72 16.53 5.27 0.09 -8.64 16 9 N -0.60 -7.01 2.97 -173.78 -0.52 -7.53 16 10 C 0.11 1.47 6.45 -3.49 -0.02 1.44 16 11 C -0.12 -1.83 5.24 -26.39 -0.14 -1.97 16 12 C -0.09 -1.29 1.79 -90.58 -0.16 -1.45 16 13 C 0.18 3.23 2.47 -67.93 -0.17 3.07 16 14 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 15 C -0.17 -2.76 9.14 37.16 0.34 -2.42 16 16 N -0.72 -16.95 4.41 -53.42 -0.24 -17.18 16 17 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.39 13.06 55.49 0.72 -26.66 16 21 Si 0.90 22.07 29.55 -169.99 -5.02 17.04 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C -0.13 -1.42 5.04 -26.61 -0.13 -1.55 16 26 C 0.10 0.88 5.96 -3.71 -0.02 0.86 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.23 0.77 7.55 -52.48 -0.40 0.37 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.30 7.03 -51.93 -0.36 0.94 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.68 7.40 -51.93 -0.38 1.29 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.51 6.40 -51.93 -0.33 0.18 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.38 9.55 7.58 -40.82 -0.31 9.24 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.79 6.36 -51.93 -0.33 0.46 16 43 H 0.08 0.59 4.47 -51.93 -0.23 0.36 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -32.31 356.15 -6.65 -38.97 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.54 Total: 5.69 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.14 Total: -4.53 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.39 Total: -55.02 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.29 Total: -7.51 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.31 -6.65 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753278564.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.186 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds