Wall clock time and date at job start Tue Mar 31 2020 09:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.46869 * 2 1 4 4 N 1.30013 * 127.33406 * 270.03524 * 3 2 1 5 5 O 1.20661 * 112.30324 * 179.97438 * 4 3 2 6 6 C 1.33500 * 113.15483 * 359.72385 * 5 4 3 7 7 C 1.37358 * 106.33906 * 0.44637 * 6 5 4 8 8 C 1.47398 * 128.56137 * 179.85753 * 7 6 5 9 9 O 1.21606 * 119.99842 * 179.68178 * 8 7 6 10 10 N 1.34775 * 120.00155 * 359.67599 * 8 7 6 11 11 C 1.46503 * 119.99873 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.44678 * 325.03309 * 11 10 8 13 13 C 1.53035 * 109.46077 * 85.00041 * 11 10 8 14 14 C 1.53193 * 109.31426 * 181.38178 * 13 11 10 15 15 N 1.46920 * 108.77695 * 305.36880 * 14 13 11 16 16 C 1.36937 * 120.63240 * 233.63011 * 15 14 13 17 17 H 1.07997 * 120.00165 * 152.78586 * 16 15 14 18 18 C 1.38813 * 119.99666 * 332.78516 * 16 15 14 19 19 N 1.31623 * 119.99854 * 159.75687 * 18 16 15 20 20 Si 1.86798 * 119.99956 * 339.75322 * 18 16 15 21 21 H 1.48504 * 109.47062 * 94.90282 * 20 18 16 22 22 H 1.48501 * 109.47335 * 214.89799 * 20 18 16 23 23 H 1.48497 * 109.47321 * 334.90605 * 20 18 16 24 24 C 1.46930 * 118.73896 * 53.60117 * 15 14 13 25 25 C 1.53040 * 109.45800 * 205.06893 * 11 10 8 26 26 H 1.09001 * 109.49978 * 298.56951 * 25 11 10 27 27 C 1.53002 * 109.49698 * 58.65980 * 25 11 10 28 28 H 1.09002 * 109.47163 * 300.00103 * 1 2 3 29 29 H 1.09004 * 109.47052 * 60.00324 * 1 2 3 30 30 H 1.09004 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47358 * 239.99998 * 2 1 3 32 32 H 1.09004 * 109.47052 * 119.99675 * 2 1 3 33 33 H 1.07999 * 126.82903 * 180.30637 * 6 5 4 34 34 H 0.96994 * 119.99908 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.50283 * 301.33649 * 13 11 10 36 36 H 1.09001 * 109.49637 * 61.43226 * 13 11 10 37 37 H 1.09002 * 109.58096 * 65.15476 * 14 13 11 38 38 H 1.08993 * 109.58866 * 185.57911 * 14 13 11 39 39 H 0.97000 * 119.99537 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.58247 * 66.18461 * 24 15 14 41 41 H 1.09003 * 109.58605 * 186.60066 * 24 15 14 42 42 H 1.09008 * 109.46706 * 60.00237 * 27 25 11 43 43 H 1.09002 * 109.47259 * 179.97438 * 27 25 11 44 44 H 1.08997 * 109.47323 * 300.00185 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2944 2.1644 -1.0337 5 8 2.6825 3.2632 -0.7208 6 6 2.7402 3.4429 0.6008 7 6 2.3298 2.2619 1.1696 8 6 2.2109 1.9232 2.5992 9 8 1.8216 0.8204 2.9324 10 7 2.5335 2.8357 3.5371 11 6 2.4158 2.4988 4.9580 12 1 1.5593 1.8410 5.1052 13 6 3.6898 1.7883 5.4208 14 6 3.5492 1.4069 6.8978 15 7 3.2171 2.6130 7.6681 16 6 3.9694 2.9772 8.7529 17 1 4.0310 4.0156 9.0432 18 6 4.6529 2.0116 9.4792 19 7 5.6656 2.3585 10.2450 20 14 4.1351 0.2202 9.3697 21 1 4.9591 -0.4715 8.3460 22 1 4.3327 -0.4336 10.6883 23 1 2.7023 0.1414 8.9877 24 6 2.0629 3.4215 7.2522 25 6 2.2203 3.7804 5.7713 26 1 3.0877 4.4280 5.6440 27 6 0.9643 4.5068 5.2856 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0503 4.3380 1.1195 34 1 2.8444 3.7152 3.2713 35 1 3.8410 0.8879 4.8254 36 1 4.5434 2.4546 5.2968 37 1 2.7534 0.6705 7.0108 38 1 4.4894 0.9901 7.2587 39 1 6.1429 1.6837 10.7528 40 1 1.1460 2.8495 7.3942 41 1 2.0226 4.3340 7.8471 42 1 0.0972 3.8590 5.4146 43 1 0.8252 5.4192 5.8654 44 1 1.0755 4.7593 4.2311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942609708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:42 Heat of formation + Delta-G solvation = 37.847368 kcal Electronic energy + Delta-G solvation = -25968.384685 eV Core-core repulsion = 22310.480468 eV Total energy + Delta-G solvation = -3657.904217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.17374 -39.97510 -37.96076 -35.47482 -34.79149 -33.16172 -32.21426 -31.62546 -31.46767 -30.11714 -26.51456 -25.86054 -24.61740 -24.05506 -22.18075 -21.50083 -21.16630 -20.47183 -19.79985 -18.27364 -17.94460 -16.90642 -16.60100 -16.26337 -15.38865 -14.88782 -14.81023 -14.50385 -14.46409 -14.06673 -13.66026 -13.52558 -13.44049 -13.16409 -12.87829 -12.81638 -12.18594 -12.04419 -11.89749 -11.79505 -11.71296 -11.62159 -11.14329 -11.09031 -10.67057 -10.62306 -10.25113 -10.19718 -10.13898 -10.04979 -10.02538 -9.79869 -9.52018 -8.92636 -8.64919 -7.03407 -5.97891 -3.34630 0.80458 1.55053 2.64623 3.09407 3.12587 3.32590 3.48747 3.51536 3.75972 4.01078 4.51088 4.56805 4.69928 4.86582 4.91433 4.95628 5.06873 5.12106 5.19126 5.21335 5.26234 5.38840 5.60146 5.64491 5.67250 5.77587 5.80930 5.91058 5.95170 5.99817 6.02518 6.05587 6.18382 6.29437 6.35400 6.53479 6.58360 6.63996 6.64350 6.86798 7.42705 7.91534 7.92547 8.11754 8.29005 8.89588 9.68524 10.05149 11.17825 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.003518 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.345259 B = 7958.219908 C = 8430.319263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C 0.073 3.927 4 N -0.360 5.360 5 O 0.096 5.904 6 C -0.010 4.010 7 C -0.247 4.247 8 C 0.591 3.409 9 O -0.526 6.526 10 N -0.714 5.714 11 C 0.158 3.842 12 H 0.086 0.914 13 C -0.142 4.142 14 C 0.129 3.871 15 N -0.606 5.606 16 C -0.262 4.262 17 H 0.086 0.914 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.881 3.119 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.268 1.268 24 C 0.158 3.842 25 C -0.116 4.116 26 H 0.077 0.923 27 C -0.142 4.142 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.225 0.775 34 H 0.395 0.605 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.263 0.737 40 H 0.026 0.974 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 2.764 -20.100 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 C -0.090 4.090 4 N -0.067 5.067 5 O 0.037 5.963 6 C -0.093 4.093 7 C -0.255 4.255 8 C 0.377 3.623 9 O -0.403 6.403 10 N -0.364 5.364 11 C 0.055 3.945 12 H 0.104 0.896 13 C -0.183 4.183 14 C 0.003 3.997 15 N -0.329 5.329 16 C -0.390 4.390 17 H 0.104 0.896 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.712 3.288 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.193 1.193 24 C 0.031 3.969 25 C -0.137 4.137 26 H 0.095 0.905 27 C -0.200 4.200 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.242 0.758 34 H 0.228 0.772 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.682 1.769 -21.008 22.800 hybrid contribution 0.136 -0.531 0.728 0.911 sum -8.546 1.238 -20.281 22.042 Atomic orbital electron populations 1.21658 0.93586 1.02541 1.02150 1.20059 0.96781 0.87324 1.04482 1.24897 0.98883 0.98902 0.86299 1.73672 1.16718 0.92662 1.23611 1.84573 1.62043 1.26690 1.23035 1.26418 0.98605 1.00112 0.84120 1.22486 1.11978 0.95058 0.95937 1.16838 0.77786 0.84823 0.82886 1.90803 1.46246 1.21458 1.81780 1.46083 1.67278 1.16037 1.06982 1.21073 0.99264 0.97046 0.77095 0.89577 1.22420 0.97162 1.00093 0.98591 1.21317 0.99501 0.89667 0.89231 1.44397 1.30446 1.26869 1.31231 1.18908 1.22551 0.94056 1.03513 0.89602 1.25265 0.97430 0.97826 0.96939 1.69832 1.19566 1.33874 1.31814 0.86972 0.79657 0.86518 0.75692 1.21649 1.23108 1.19339 1.20918 0.89687 0.95602 0.90674 1.21981 0.98361 0.95301 0.98080 0.90485 1.21773 0.97753 1.00356 1.00147 0.91995 0.92845 0.91447 0.90096 0.88005 0.75840 0.77157 0.92221 0.91538 0.95325 0.90777 0.92735 0.95635 0.91322 0.92795 0.92388 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 37.16 0.37 -0.98 16 2 C -0.05 -0.51 6.20 -27.89 -0.17 -0.68 16 3 C 0.07 0.85 6.84 -79.77 -0.55 0.31 16 4 N -0.36 -4.20 12.01 34.78 0.42 -3.78 16 5 O 0.10 0.93 11.06 18.63 0.21 1.13 16 6 C -0.01 -0.08 11.85 30.41 0.36 0.28 16 7 C -0.25 -2.72 6.47 -102.89 -0.67 -3.38 16 8 C 0.59 7.79 7.78 -12.53 -0.10 7.69 16 9 O -0.53 -8.76 15.36 5.27 0.08 -8.68 16 10 N -0.71 -8.32 4.36 -54.85 -0.24 -8.55 16 11 C 0.16 2.35 1.88 -67.89 -0.13 2.23 16 12 H 0.09 1.44 7.57 -51.93 -0.39 1.04 16 13 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 14 C 0.13 2.79 4.19 -3.71 -0.02 2.77 16 15 N -0.61 -13.83 2.77 -172.33 -0.48 -14.31 16 16 C -0.26 -7.12 10.04 -15.06 -0.15 -7.27 16 17 H 0.09 2.47 8.05 -52.49 -0.42 2.05 16 18 C 0.02 0.70 5.24 -17.43 -0.09 0.61 16 19 N -0.91 -27.49 13.97 55.49 0.78 -26.72 16 20 Si 0.88 22.32 24.35 -169.99 -4.14 18.18 16 21 H -0.29 -7.13 6.70 56.52 0.38 -6.75 16 22 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.27 -6.68 6.45 56.52 0.36 -6.32 16 24 C 0.16 2.88 5.80 -3.71 -0.02 2.86 16 25 C -0.12 -1.65 2.46 -90.50 -0.22 -1.88 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 C -0.14 -1.58 9.03 37.16 0.34 -1.25 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.19 7.11 -51.93 -0.37 0.82 16 33 H 0.23 0.63 7.68 -52.49 -0.40 0.23 16 34 H 0.39 3.31 7.50 -40.82 -0.31 3.00 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.63 6.98 -51.93 -0.36 0.27 16 38 H 0.07 1.77 4.49 -51.93 -0.23 1.53 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 42 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.44 7.36 -51.93 -0.38 0.06 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -32.98 351.87 -5.98 -38.95 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.71 Total: -0.17 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.20 Total: -1.36 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.48 Total: -53.36 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.29 Total: -7.55 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.98 -5.98 -38.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942609708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.801 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds