Wall clock time and date at job start Tue Mar 31 2020 09:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.46869 * 2 1 4 4 N 1.30013 * 127.33406 * 270.03524 * 3 2 1 5 5 O 1.20661 * 112.30324 * 179.97438 * 4 3 2 6 6 C 1.33500 * 113.15483 * 359.72385 * 5 4 3 7 7 C 1.37358 * 106.33906 * 0.44637 * 6 5 4 8 8 C 1.47398 * 128.56137 * 179.85753 * 7 6 5 9 9 O 1.21606 * 119.99842 * 179.68178 * 8 7 6 10 10 N 1.34775 * 120.00155 * 359.67599 * 8 7 6 11 11 C 1.46503 * 119.99873 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.44678 * 325.03309 * 11 10 8 13 13 C 1.53035 * 109.46077 * 85.00041 * 11 10 8 14 14 C 1.53193 * 109.31426 * 181.38178 * 13 11 10 15 15 N 1.46920 * 108.77695 * 305.36880 * 14 13 11 16 16 C 1.36937 * 120.63240 * 233.63011 * 15 14 13 17 17 H 1.07997 * 120.00165 * 152.78586 * 16 15 14 18 18 C 1.38813 * 119.99666 * 332.78516 * 16 15 14 19 19 N 1.31623 * 119.99854 * 159.75687 * 18 16 15 20 20 Si 1.86798 * 119.99956 * 339.75322 * 18 16 15 21 21 H 1.48504 * 109.47062 * 94.90282 * 20 18 16 22 22 H 1.48501 * 109.47335 * 214.89799 * 20 18 16 23 23 H 1.48497 * 109.47321 * 334.90605 * 20 18 16 24 24 C 1.46930 * 118.73896 * 53.60117 * 15 14 13 25 25 C 1.53040 * 109.45800 * 205.06893 * 11 10 8 26 26 H 1.09001 * 109.49978 * 298.56951 * 25 11 10 27 27 C 1.53002 * 109.49698 * 58.65980 * 25 11 10 28 28 H 1.09002 * 109.47163 * 300.00103 * 1 2 3 29 29 H 1.09004 * 109.47052 * 60.00324 * 1 2 3 30 30 H 1.09004 * 109.46972 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47358 * 239.99998 * 2 1 3 32 32 H 1.09004 * 109.47052 * 119.99675 * 2 1 3 33 33 H 1.07999 * 126.82903 * 180.30637 * 6 5 4 34 34 H 0.96994 * 119.99908 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.50283 * 301.33649 * 13 11 10 36 36 H 1.09001 * 109.49637 * 61.43226 * 13 11 10 37 37 H 1.09002 * 109.58096 * 65.15476 * 14 13 11 38 38 H 1.08993 * 109.58866 * 185.57911 * 14 13 11 39 39 H 0.97000 * 119.99537 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.58247 * 66.18461 * 24 15 14 41 41 H 1.09003 * 109.58605 * 186.60066 * 24 15 14 42 42 H 1.09008 * 109.46706 * 60.00237 * 27 25 11 43 43 H 1.09002 * 109.47259 * 179.97438 * 27 25 11 44 44 H 1.08997 * 109.47323 * 300.00185 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2944 2.1644 -1.0337 5 8 2.6825 3.2632 -0.7208 6 6 2.7402 3.4429 0.6008 7 6 2.3298 2.2619 1.1696 8 6 2.2109 1.9232 2.5992 9 8 1.8216 0.8204 2.9324 10 7 2.5335 2.8357 3.5371 11 6 2.4158 2.4988 4.9580 12 1 1.5593 1.8410 5.1052 13 6 3.6898 1.7883 5.4208 14 6 3.5492 1.4069 6.8978 15 7 3.2171 2.6130 7.6681 16 6 3.9694 2.9772 8.7529 17 1 4.0310 4.0156 9.0432 18 6 4.6529 2.0116 9.4792 19 7 5.6656 2.3585 10.2450 20 14 4.1351 0.2202 9.3697 21 1 4.9591 -0.4715 8.3460 22 1 4.3327 -0.4336 10.6883 23 1 2.7023 0.1414 8.9877 24 6 2.0629 3.4215 7.2522 25 6 2.2203 3.7804 5.7713 26 1 3.0877 4.4280 5.6440 27 6 0.9643 4.5068 5.2856 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.0503 4.3380 1.1195 34 1 2.8444 3.7152 3.2713 35 1 3.8410 0.8879 4.8254 36 1 4.5434 2.4546 5.2968 37 1 2.7534 0.6705 7.0108 38 1 4.4894 0.9901 7.2587 39 1 6.1429 1.6837 10.7528 40 1 1.1460 2.8495 7.3942 41 1 2.0226 4.3340 7.8471 42 1 0.0972 3.8590 5.4146 43 1 0.8252 5.4192 5.8654 44 1 1.0755 4.7593 4.2311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942609708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:42 Heat of formation + Delta-G solvation = 15.217935 kcal Electronic energy + Delta-G solvation = -25969.365970 eV Core-core repulsion = 22310.480468 eV Total energy + Delta-G solvation = -3658.885502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.96612 -41.11541 -39.32405 -36.46338 -36.08404 -34.45374 -33.38878 -33.23663 -32.26051 -31.60772 -27.81379 -27.25644 -25.69897 -25.06741 -23.60114 -23.06193 -22.00158 -21.45597 -21.07729 -19.22723 -18.77441 -18.68692 -17.61547 -17.55149 -16.85428 -16.12994 -16.06404 -15.91382 -15.36373 -15.15041 -15.03543 -14.92480 -14.74664 -14.29347 -14.19983 -13.87401 -13.65115 -13.57401 -13.29722 -12.81741 -12.72541 -12.68517 -12.54759 -12.21093 -12.10799 -11.95687 -11.91037 -11.72686 -11.47901 -11.36414 -11.13043 -10.99588 -10.79895 -10.74387 -10.05660 -8.96339 -8.17414 -5.48654 0.08727 0.72356 1.28519 1.39809 1.47542 1.85141 2.15237 2.28408 2.40012 2.96839 3.04153 3.28148 3.32924 3.67591 3.80066 3.89641 3.98915 4.11338 4.20921 4.23612 4.29340 4.33899 4.41626 4.59083 4.59568 4.63285 4.75712 4.82118 4.83169 4.91407 4.92316 4.93375 5.07738 5.11075 5.13705 5.20218 5.22796 5.33894 5.44550 5.55687 5.86248 6.12894 6.50561 6.90081 7.15787 7.20836 7.61150 8.02091 9.02177 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.003518 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.345259 B = 7958.219908 C = 8430.319263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 C 0.057 3.943 4 N -0.378 5.378 5 O 0.098 5.902 6 C 0.032 3.968 7 C -0.279 4.279 8 C 0.595 3.405 9 O -0.567 6.567 10 N -0.698 5.698 11 C 0.170 3.830 12 H 0.070 0.930 13 C -0.132 4.132 14 C 0.126 3.874 15 N -0.619 5.619 16 C -0.243 4.243 17 H 0.062 0.938 18 C -0.031 4.031 19 N -0.955 5.955 20 Si 0.936 3.064 21 H -0.282 1.282 22 H -0.310 1.310 23 H -0.263 1.263 24 C 0.150 3.850 25 C -0.102 4.102 26 H 0.082 0.918 27 C -0.135 4.135 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.278 0.722 34 H 0.415 0.585 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.048 0.952 39 H 0.261 0.739 40 H 0.030 0.970 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 4.189 -22.595 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.105 4.105 4 N -0.086 5.086 5 O 0.040 5.960 6 C -0.050 4.050 7 C -0.286 4.286 8 C 0.382 3.618 9 O -0.447 6.447 10 N -0.349 5.349 11 C 0.065 3.935 12 H 0.088 0.912 13 C -0.172 4.172 14 C 0.000 4.000 15 N -0.343 5.343 16 C -0.373 4.373 17 H 0.080 0.920 18 C -0.226 4.226 19 N -0.601 5.601 20 Si 0.766 3.234 21 H -0.210 1.210 22 H -0.239 1.239 23 H -0.187 1.187 24 C 0.025 3.975 25 C -0.123 4.123 26 H 0.100 0.900 27 C -0.193 4.193 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.293 0.707 34 H 0.253 0.747 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.740 3.229 -23.570 25.707 hybrid contribution 0.441 -0.872 1.452 1.751 sum -9.300 2.357 -22.118 24.109 Atomic orbital electron populations 1.21604 0.92947 1.03223 1.01506 1.20055 0.97344 0.87287 1.04116 1.25118 0.99129 0.99408 0.86855 1.73683 1.17614 0.93334 1.23923 1.84557 1.61484 1.25916 1.24033 1.27283 0.94567 1.00151 0.82961 1.22251 1.15155 0.96707 0.94530 1.17057 0.76746 0.84186 0.83776 1.90790 1.48128 1.23276 1.82520 1.45724 1.67022 1.16850 1.05279 1.20712 0.96951 0.96837 0.78968 0.91179 1.22253 0.98841 1.00482 0.95660 1.21268 0.97975 0.89186 0.91588 1.44527 1.31611 1.27684 1.30470 1.18912 1.21509 0.92933 1.03908 0.92005 1.25807 0.97931 1.01249 0.97607 1.69941 1.21314 1.34888 1.33958 0.86066 0.79510 0.82594 0.75186 1.20960 1.23947 1.18725 1.21165 0.88040 0.94842 0.93484 1.21778 1.00446 0.95154 0.94882 0.89988 1.21729 0.95500 1.00157 1.01920 0.93581 0.92339 0.90179 0.89072 0.89667 0.70694 0.74747 0.92307 0.91386 0.95640 0.93340 0.93008 0.95170 0.91412 0.93192 0.91318 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.89 71.98 0.71 -1.77 16 2 C -0.05 -1.03 6.20 29.85 0.18 -0.84 16 3 C 0.06 1.26 6.84 45.16 0.31 1.56 16 4 N -0.38 -8.03 12.01 -44.77 -0.54 -8.56 16 5 O 0.10 1.56 11.06 76.92 0.85 2.42 16 6 C 0.03 0.35 11.85 67.61 0.80 1.15 16 7 C -0.28 -5.37 6.47 -18.74 -0.12 -5.49 16 8 C 0.60 14.35 7.78 86.66 0.67 15.03 16 9 O -0.57 -18.51 15.36 -4.05 -0.06 -18.57 16 10 N -0.70 -13.88 4.36 -445.71 -1.94 -15.82 16 11 C 0.17 4.65 1.88 45.02 0.08 4.73 16 12 H 0.07 2.22 7.57 -2.39 -0.02 2.20 16 13 C -0.13 -4.47 5.65 30.67 0.17 -4.30 16 14 C 0.13 5.36 4.19 86.36 0.36 5.72 16 15 N -0.62 -27.94 2.77 -699.12 -1.94 -29.88 16 16 C -0.24 -13.35 10.04 84.03 0.84 -12.51 16 17 H 0.06 3.64 8.05 -2.91 -0.02 3.62 16 18 C -0.03 -1.80 5.24 84.86 0.44 -1.35 16 19 N -0.95 -59.41 13.97 21.65 0.30 -59.11 16 20 Si 0.94 47.12 24.35 68.60 1.67 48.79 16 21 H -0.28 -13.74 6.70 99.48 0.67 -13.07 16 22 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 23 H -0.26 -12.77 6.45 99.48 0.64 -12.13 16 24 C 0.15 5.24 5.80 86.36 0.50 5.74 16 25 C -0.10 -2.60 2.46 -10.72 -0.03 -2.63 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 C -0.14 -2.46 9.03 71.98 0.65 -1.81 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.22 8.14 -2.38 -0.02 1.21 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 2.03 7.11 -2.39 -0.02 2.02 16 33 H 0.28 -0.35 7.68 -2.91 -0.02 -0.37 16 34 H 0.41 4.86 7.50 -92.71 -0.70 4.16 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.03 1.11 6.98 -2.39 -0.02 1.09 16 38 H 0.05 2.31 4.49 -2.39 -0.01 2.30 16 39 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 2.36 7.93 -2.39 -0.02 2.34 16 42 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 44 H 0.07 0.99 7.36 -2.39 -0.02 0.97 16 Total: -1.00 -74.78 351.87 4.15 -70.64 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.21 Total: 6.87 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 5.59 Total: 3.23 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.12 Total: -113.38 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.79 Total: -16.15 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.67 Total: 48.79 kcal Total: -74.78 4.15 -70.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942609708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.853 kcal (2) G-P(sol) polarization free energy of solvation -74.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds