Wall clock time and date at job start Tue Mar 31 2020 09:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47018 * 2 1 4 4 C 1.52995 * 109.47568 * 120.00454 * 2 1 3 5 5 N 1.46497 * 109.47593 * 175.00396 * 4 2 1 6 6 N 1.40120 * 126.17135 * 95.27127 * 5 4 2 7 7 H 0.97000 * 125.90685 * 0.04907 * 6 5 4 8 8 C 1.36601 * 108.17900 * 180.16505 * 6 5 4 9 9 C 1.50700 * 125.77051 * 179.84377 * 8 6 5 10 10 C 1.50703 * 109.47066 * 274.72212 * 9 8 6 11 11 O 1.21288 * 119.99923 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99732 * 180.02562 * 10 9 8 13 13 C 1.37103 * 119.99736 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99753 * 224.47360 * 13 12 10 15 15 C 1.38953 * 119.99760 * 44.47112 * 13 12 10 16 16 N 1.31411 * 120.00119 * 18.01397 * 15 13 12 17 17 Si 1.86796 * 119.99586 * 198.00617 * 15 13 12 18 18 H 1.48503 * 109.47440 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46879 * 120.00477 * 17 15 13 20 20 H 1.48497 * 109.47509 * 240.00152 * 17 15 13 21 21 C 1.46493 * 120.00300 * 359.97438 * 12 10 9 22 22 C 1.52996 * 117.50029 * 183.20713 * 21 12 10 23 23 C 1.53005 * 117.49765 * 114.54821 * 21 12 10 24 24 C 1.34815 * 108.45509 * 359.58387 * 8 6 5 25 25 C 1.34879 * 126.15997 * 274.97344 * 5 4 2 26 26 O 1.21778 * 126.19373 * 0.02562 * 25 5 4 27 27 H 1.09003 * 109.47026 * 299.99729 * 1 2 3 28 28 H 1.09004 * 109.47414 * 59.99821 * 1 2 3 29 29 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47026 * 240.00271 * 2 1 3 31 31 H 1.08999 * 109.47189 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47476 * 300.00352 * 3 2 1 33 33 H 1.09003 * 109.47001 * 60.00255 * 3 2 1 34 34 H 1.08998 * 109.47397 * 54.99431 * 4 2 1 35 35 H 1.09003 * 109.47183 * 294.99927 * 4 2 1 36 36 H 1.08998 * 109.47303 * 154.71992 * 9 8 6 37 37 H 1.09005 * 109.47290 * 34.71848 * 9 8 6 38 38 H 0.96994 * 119.99786 * 174.95982 * 16 15 13 39 39 H 1.08998 * 115.55399 * 328.87715 * 21 12 10 40 40 H 1.09004 * 117.50325 * 0.02562 * 22 21 12 41 41 H 1.09002 * 117.50404 * 145.02120 * 22 21 12 42 42 H 1.09003 * 117.49337 * 214.97712 * 23 21 12 43 43 H 1.08997 * 117.49839 * 359.97438 * 23 21 12 44 44 H 1.08001 * 125.95915 * 180.28320 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8263 1.1905 6 7 4.4169 0.0531 1.7816 7 1 4.1949 0.8400 2.3035 8 6 5.6772 -0.3882 1.4937 9 6 6.9615 0.2665 1.9328 10 6 7.3329 1.3507 0.9541 11 8 6.6245 1.5698 -0.0058 12 7 8.4526 2.0761 1.1450 13 6 8.7907 3.0621 0.2543 14 1 9.8107 3.1533 -0.0886 15 6 7.8210 3.9439 -0.2071 16 7 6.6888 4.0762 0.4467 17 14 8.1271 4.9414 -1.7564 18 1 9.4686 4.6110 -2.3010 19 1 7.0891 4.6163 -2.7675 20 1 8.0667 6.3894 -1.4330 21 6 9.3084 1.8111 2.3040 22 6 10.5244 2.7173 2.5063 23 6 10.7155 1.2735 2.0351 24 6 5.5776 -1.5116 0.7550 25 6 4.2040 -1.7903 0.5624 26 8 3.7411 -2.7299 -0.0586 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -1.7198 1.2951 35 1 1.7517 -0.1584 2.1369 36 1 7.7559 -0.4790 1.9679 37 1 6.8275 0.7016 2.9232 38 1 6.0427 4.7435 0.1674 39 1 8.7945 1.4522 3.1957 40 1 10.6875 3.5111 1.7772 41 1 10.8107 2.9543 3.5310 42 1 11.1272 0.5612 2.7501 43 1 11.0041 1.1166 0.9958 44 1 6.4026 -2.0970 0.3767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930615708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:18 Heat of formation + Delta-G solvation = 38.702763 kcal Electronic energy + Delta-G solvation = -26207.427945 eV Core-core repulsion = 22549.560821 eV Total energy + Delta-G solvation = -3657.867124 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20009 -38.69131 -36.72328 -36.40996 -35.99414 -33.07679 -32.35106 -31.05642 -29.49510 -29.12286 -27.12764 -25.83891 -24.55152 -21.82354 -21.39968 -21.00483 -20.69305 -19.82695 -19.25583 -17.69648 -16.64462 -16.14995 -15.58892 -15.36492 -15.09188 -14.81463 -14.54357 -14.19346 -13.98055 -13.76115 -13.45876 -13.21460 -12.92423 -12.90222 -12.54841 -12.33646 -12.05799 -11.99670 -11.73377 -11.59461 -11.28117 -11.13014 -10.97879 -10.93804 -10.92805 -10.75399 -10.60001 -10.22710 -10.06230 -9.83234 -9.34979 -8.90636 -8.73830 -8.14199 -7.44124 -7.13385 -6.22295 -3.96481 1.93426 2.15925 3.23828 3.34920 3.36700 3.73386 3.96634 4.12503 4.20533 4.66486 4.70262 4.72091 4.80543 4.99018 5.05717 5.17846 5.22093 5.40802 5.46499 5.54763 5.56208 5.57505 5.64942 5.68747 5.80977 5.83969 5.88866 5.93826 6.00783 6.08047 6.16660 6.24619 6.31812 6.35369 6.44237 6.46891 6.66684 6.78377 6.85785 7.53797 7.57787 7.87968 8.16846 8.73060 8.94736 9.03136 9.54898 10.14832 10.86885 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.004715 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.366918 B = 5937.345285 C = 7236.060896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.150 4.150 4 C 0.142 3.858 5 N -0.416 5.416 6 N -0.486 5.486 7 H 0.438 0.562 8 C 0.238 3.762 9 C -0.090 4.090 10 C 0.485 3.515 11 O -0.519 6.519 12 N -0.425 5.425 13 C -0.345 4.345 14 H 0.079 0.921 15 C 0.076 3.924 16 N -0.835 5.835 17 Si 0.911 3.089 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.286 1.286 21 C 0.071 3.929 22 C -0.173 4.173 23 C -0.206 4.206 24 C -0.354 4.354 25 C 0.537 3.463 26 O -0.571 6.571 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.262 0.738 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 -4.361 8.061 10.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.207 4.207 4 C 0.021 3.979 5 N -0.238 5.238 6 N -0.206 5.206 7 H 0.283 0.717 8 C 0.119 3.881 9 C -0.132 4.132 10 C 0.270 3.730 11 O -0.395 6.395 12 N -0.147 5.147 13 C -0.472 4.472 14 H 0.096 0.904 15 C -0.135 4.135 16 N -0.468 5.468 17 Si 0.738 3.262 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.212 1.212 21 C -0.035 4.035 22 C -0.211 4.211 23 C -0.245 4.245 24 C -0.385 4.385 25 C 0.336 3.664 26 O -0.452 6.452 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.557 -4.665 7.198 10.220 hybrid contribution 0.053 1.225 -0.328 1.269 sum -5.504 -3.440 6.870 9.451 Atomic orbital electron populations 1.21757 0.94297 1.01862 1.02082 1.21603 0.95908 0.97356 0.98899 1.21862 1.02690 0.94701 1.01483 1.21716 0.75265 1.02340 0.98584 1.48374 1.02099 1.22016 1.51360 1.43889 0.99768 1.24983 1.51977 0.71721 1.20315 0.84465 0.91543 0.91771 1.20665 0.92201 0.99492 1.00829 1.19386 0.84139 0.82592 0.86841 1.90608 1.49925 1.67840 1.31152 1.42709 1.21052 1.30809 1.20093 1.18884 0.96078 1.09778 1.22438 0.90380 1.25199 0.95172 0.95631 0.97475 1.69797 1.08197 1.31099 1.37750 0.86167 0.78616 0.78442 0.82949 1.19496 1.20671 1.21221 1.21735 0.86547 1.03405 0.91831 1.23073 1.02187 0.94224 1.01581 1.23339 1.02232 0.96914 1.02044 1.21508 0.97025 1.04344 1.15628 1.16957 0.87830 0.81572 0.80012 1.90791 1.77245 1.31699 1.45495 0.92613 0.92164 0.92443 0.90176 0.91331 0.92555 0.93104 0.88612 0.90070 0.86976 0.88860 0.92755 0.87953 0.87478 0.89786 0.89667 0.88994 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.15 0.34 -1.07 16 2 C -0.12 -1.54 3.13 -90.62 -0.28 -1.83 16 3 C -0.15 -2.15 9.08 37.16 0.34 -1.81 16 4 C 0.14 1.81 5.75 -4.05 -0.02 1.79 16 5 N -0.42 -6.77 3.14 -63.24 -0.20 -6.97 16 6 N -0.49 -7.56 6.73 33.67 0.23 -7.34 16 7 H 0.44 5.89 8.96 -182.58 -1.64 4.25 16 8 C 0.24 4.08 5.70 -81.68 -0.47 3.62 16 9 C -0.09 -1.46 4.86 -29.03 -0.14 -1.61 16 10 C 0.48 10.96 6.96 -10.98 -0.08 10.89 16 11 O -0.52 -14.10 13.81 5.55 0.08 -14.03 16 12 N -0.43 -9.63 2.83 -107.73 -0.31 -9.93 16 13 C -0.35 -8.82 7.91 -14.93 -0.12 -8.94 16 14 H 0.08 1.96 7.26 -52.49 -0.38 1.58 16 15 C 0.08 2.01 4.39 -17.47 -0.08 1.93 16 16 N -0.83 -22.98 11.75 55.50 0.65 -22.33 16 17 Si 0.91 21.26 29.59 -169.99 -5.03 16.23 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.07 1.25 5.87 -67.93 -0.40 0.85 16 22 C -0.17 -2.82 9.80 -26.70 -0.26 -3.08 16 23 C -0.21 -3.16 10.36 -26.69 -0.28 -3.43 16 24 C -0.35 -6.63 10.73 -39.56 -0.42 -7.05 16 25 C 0.54 10.64 7.95 -14.98 -0.12 10.52 16 26 O -0.57 -12.90 17.92 5.12 0.09 -12.81 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.24 7.23 -51.93 -0.38 0.86 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 1.56 8.11 -51.93 -0.42 1.14 16 37 H 0.09 1.28 7.57 -51.93 -0.39 0.89 16 38 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 39 H 0.10 1.52 6.96 -51.93 -0.36 1.16 16 40 H 0.11 1.98 6.73 -51.93 -0.35 1.63 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 44 H 0.15 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -34.22 367.52 -9.06 -43.28 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.13 Total: 7.58 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.99 Total: 0.77 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.38 Total: -46.57 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: 0.17 Total: -26.84 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.22 -9.06 -43.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.984 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds