Wall clock time and date at job start Tue Mar 31 2020 09:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47018 * 2 1 4 4 C 1.52995 * 109.47568 * 120.00454 * 2 1 3 5 5 N 1.46497 * 109.47593 * 175.00396 * 4 2 1 6 6 N 1.40120 * 126.17135 * 95.27127 * 5 4 2 7 7 H 0.97000 * 125.90685 * 0.04907 * 6 5 4 8 8 C 1.36601 * 108.17900 * 180.16505 * 6 5 4 9 9 C 1.50700 * 125.77051 * 179.84377 * 8 6 5 10 10 C 1.50703 * 109.47066 * 274.72212 * 9 8 6 11 11 O 1.21288 * 119.99923 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99732 * 180.02562 * 10 9 8 13 13 C 1.37103 * 119.99736 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99753 * 224.47360 * 13 12 10 15 15 C 1.38953 * 119.99760 * 44.47112 * 13 12 10 16 16 N 1.31411 * 120.00119 * 18.01397 * 15 13 12 17 17 Si 1.86796 * 119.99586 * 198.00617 * 15 13 12 18 18 H 1.48503 * 109.47440 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46879 * 120.00477 * 17 15 13 20 20 H 1.48497 * 109.47509 * 240.00152 * 17 15 13 21 21 C 1.46493 * 120.00300 * 359.97438 * 12 10 9 22 22 C 1.52996 * 117.50029 * 183.20713 * 21 12 10 23 23 C 1.53005 * 117.49765 * 114.54821 * 21 12 10 24 24 C 1.34815 * 108.45509 * 359.58387 * 8 6 5 25 25 C 1.34879 * 126.15997 * 274.97344 * 5 4 2 26 26 O 1.21778 * 126.19373 * 0.02562 * 25 5 4 27 27 H 1.09003 * 109.47026 * 299.99729 * 1 2 3 28 28 H 1.09004 * 109.47414 * 59.99821 * 1 2 3 29 29 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47026 * 240.00271 * 2 1 3 31 31 H 1.08999 * 109.47189 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47476 * 300.00352 * 3 2 1 33 33 H 1.09003 * 109.47001 * 60.00255 * 3 2 1 34 34 H 1.08998 * 109.47397 * 54.99431 * 4 2 1 35 35 H 1.09003 * 109.47183 * 294.99927 * 4 2 1 36 36 H 1.08998 * 109.47303 * 154.71992 * 9 8 6 37 37 H 1.09005 * 109.47290 * 34.71848 * 9 8 6 38 38 H 0.96994 * 119.99786 * 174.95982 * 16 15 13 39 39 H 1.08998 * 115.55399 * 328.87715 * 21 12 10 40 40 H 1.09004 * 117.50325 * 0.02562 * 22 21 12 41 41 H 1.09002 * 117.50404 * 145.02120 * 22 21 12 42 42 H 1.09003 * 117.49337 * 214.97712 * 23 21 12 43 43 H 1.08997 * 117.49839 * 359.97438 * 23 21 12 44 44 H 1.08001 * 125.95915 * 180.28320 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8263 1.1905 6 7 4.4169 0.0531 1.7816 7 1 4.1949 0.8400 2.3035 8 6 5.6772 -0.3882 1.4937 9 6 6.9615 0.2665 1.9328 10 6 7.3329 1.3507 0.9541 11 8 6.6245 1.5698 -0.0058 12 7 8.4526 2.0761 1.1450 13 6 8.7907 3.0621 0.2543 14 1 9.8107 3.1533 -0.0886 15 6 7.8210 3.9439 -0.2071 16 7 6.6888 4.0762 0.4467 17 14 8.1271 4.9414 -1.7564 18 1 9.4686 4.6110 -2.3010 19 1 7.0891 4.6163 -2.7675 20 1 8.0667 6.3894 -1.4330 21 6 9.3084 1.8111 2.3040 22 6 10.5244 2.7173 2.5063 23 6 10.7155 1.2735 2.0351 24 6 5.5776 -1.5116 0.7550 25 6 4.2040 -1.7903 0.5624 26 8 3.7411 -2.7299 -0.0586 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6054 -1.7198 1.2951 35 1 1.7517 -0.1584 2.1369 36 1 7.7559 -0.4790 1.9679 37 1 6.8275 0.7016 2.9232 38 1 6.0427 4.7435 0.1674 39 1 8.7945 1.4522 3.1957 40 1 10.6875 3.5111 1.7772 41 1 10.8107 2.9543 3.5310 42 1 11.1272 0.5612 2.7501 43 1 11.0041 1.1166 0.9958 44 1 6.4026 -2.0970 0.3767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930615708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:17 Heat of formation + Delta-G solvation = 16.679992 kcal Electronic energy + Delta-G solvation = -26208.382924 eV Core-core repulsion = 22549.560821 eV Total energy + Delta-G solvation = -3658.822103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.58433 -40.32763 -38.19826 -37.70401 -37.38512 -34.82519 -33.77621 -32.78032 -30.89712 -30.52098 -28.15034 -27.30609 -26.12557 -23.15990 -22.80474 -22.28839 -22.14515 -21.10762 -20.81943 -19.02883 -18.29387 -17.75756 -17.00984 -16.69948 -16.64297 -16.39379 -15.83950 -15.79061 -15.46860 -15.04489 -14.86651 -14.56871 -14.43905 -14.28016 -13.87260 -13.55487 -13.33645 -13.25530 -13.15848 -12.93116 -12.91912 -12.73621 -12.45601 -12.37658 -12.14479 -12.07149 -12.01102 -11.81182 -11.59590 -11.13376 -10.86578 -10.70775 -10.20711 -9.85493 -8.91775 -8.86897 -8.19509 -5.93819 0.57317 0.84229 1.34219 1.43380 1.48308 2.21437 2.29563 2.43399 2.86832 3.14561 3.18751 3.42222 3.61215 3.67574 3.76573 4.00494 4.12552 4.20858 4.23405 4.29520 4.36838 4.40479 4.54753 4.55846 4.58627 4.64955 4.68572 4.82493 4.92735 4.97465 5.00319 5.04090 5.12516 5.15621 5.24722 5.31648 5.37469 5.40411 5.52581 5.57549 6.19677 6.23581 6.60681 7.07040 7.22487 7.27197 7.74490 8.38677 8.88297 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.004715 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.366918 B = 5937.345285 C = 7236.060896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.134 3.866 5 N -0.409 5.409 6 N -0.470 5.470 7 H 0.449 0.551 8 C 0.244 3.756 9 C -0.074 4.074 10 C 0.473 3.527 11 O -0.577 6.577 12 N -0.441 5.441 13 C -0.349 4.349 14 H 0.073 0.927 15 C 0.031 3.969 16 N -0.861 5.861 17 Si 0.955 3.045 18 H -0.262 1.262 19 H -0.302 1.302 20 H -0.273 1.273 21 C 0.048 3.952 22 C -0.175 4.175 23 C -0.183 4.183 24 C -0.379 4.379 25 C 0.516 3.484 26 O -0.613 6.613 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.025 0.975 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.257 0.743 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.070 0.930 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 -4.427 10.851 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.201 4.201 4 C 0.015 3.985 5 N -0.229 5.229 6 N -0.191 5.191 7 H 0.297 0.703 8 C 0.123 3.877 9 C -0.115 4.115 10 C 0.261 3.739 11 O -0.458 6.458 12 N -0.162 5.162 13 C -0.477 4.477 14 H 0.091 0.909 15 C -0.176 4.176 16 N -0.496 5.496 17 Si 0.782 3.218 18 H -0.186 1.186 19 H -0.229 1.229 20 H -0.199 1.199 21 C -0.057 4.057 22 C -0.213 4.213 23 C -0.222 4.222 24 C -0.410 4.410 25 C 0.316 3.684 26 O -0.499 6.499 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.066 0.934 39 H 0.157 0.843 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.144 0.856 43 H 0.088 0.912 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.359 -4.683 10.046 12.312 hybrid contribution 0.075 1.261 -1.183 1.730 sum -5.285 -3.423 8.864 10.872 Atomic orbital electron populations 1.21708 0.91290 1.02902 1.03308 1.21537 0.98293 0.95954 0.97524 1.21798 0.99801 0.95907 1.02603 1.22096 0.73055 1.03466 0.99929 1.48452 1.03322 1.21095 1.50030 1.43980 0.99465 1.24750 1.50873 0.70295 1.20417 0.85327 0.90919 0.91086 1.20593 0.92383 0.98122 1.00401 1.20318 0.83344 0.83093 0.87127 1.90584 1.51716 1.69686 1.33790 1.42919 1.21835 1.30079 1.21335 1.19005 0.95627 1.09882 1.23200 0.90949 1.25799 0.95387 0.97026 0.99372 1.69861 1.08889 1.32001 1.38896 0.85475 0.77997 0.78177 0.80164 1.18605 1.22925 1.19892 1.22124 0.86933 1.05311 0.91315 1.23114 1.01477 0.93998 1.02681 1.23349 0.99892 0.97055 1.01907 1.21638 0.96915 1.05601 1.16803 1.17171 0.88673 0.82014 0.80503 1.90743 1.78031 1.33562 1.47569 0.90265 0.92062 0.91534 0.93947 0.95559 0.92868 0.90583 0.87907 0.86213 0.83817 0.85191 0.93428 0.84269 0.90518 0.86494 0.85559 0.91163 0.82612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.19 71.98 0.66 -1.74 16 2 C -0.11 -2.91 3.13 -10.80 -0.03 -2.95 16 3 C -0.14 -4.08 9.08 71.98 0.65 -3.42 16 4 C 0.13 3.22 5.75 86.38 0.50 3.72 16 5 N -0.41 -13.11 3.14 -472.12 -1.48 -14.59 16 6 N -0.47 -14.05 6.73 -47.39 -0.32 -14.37 16 7 H 0.45 11.19 8.96 -213.31 -1.91 9.28 16 8 C 0.24 8.08 5.70 41.03 0.23 8.31 16 9 C -0.07 -2.20 4.86 29.10 0.14 -2.06 16 10 C 0.47 21.06 6.96 87.66 0.61 21.67 16 11 O -0.58 -32.02 13.81 -3.05 -0.04 -32.06 16 12 N -0.44 -19.54 2.83 -613.14 -1.74 -21.28 16 13 C -0.35 -18.00 7.91 84.04 0.67 -17.34 16 14 H 0.07 3.70 7.26 -2.91 -0.02 3.68 16 15 C 0.03 1.67 4.39 84.93 0.37 2.04 16 16 N -0.86 -48.30 11.75 21.66 0.25 -48.04 16 17 Si 0.96 44.61 29.59 68.60 2.03 46.64 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.05 1.54 5.87 44.99 0.26 1.80 16 22 C -0.18 -5.24 9.80 30.62 0.30 -4.94 16 23 C -0.18 -4.99 10.36 30.62 0.32 -4.67 16 24 C -0.38 -14.25 10.73 22.28 0.24 -14.01 16 25 C 0.52 20.88 7.95 85.02 0.68 21.55 16 26 O -0.61 -28.78 17.92 -4.60 -0.08 -28.87 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 0.95 7.23 -2.39 -0.02 0.94 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.14 3.43 8.11 -2.39 -0.02 3.41 16 37 H 0.13 2.97 7.57 -2.38 -0.02 2.95 16 38 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 39 H 0.14 3.42 6.96 -2.39 -0.02 3.40 16 40 H 0.08 2.78 6.73 -2.38 -0.02 2.76 16 41 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.16 5.60 8.06 -2.91 -0.02 5.57 16 Total: -1.00 -79.84 367.52 3.31 -76.52 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.91 Total: 28.10 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 5.60 Total: 7.96 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -3.28 Total: -98.29 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -0.12 Total: -60.93 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -79.84 3.31 -76.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.204 kcal (2) G-P(sol) polarization free energy of solvation -79.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds