Wall clock time and date at job start Tue Mar 31 2020 08:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47075 * 2 1 4 4 N 1.30017 * 127.33290 * 269.96390 * 3 2 1 5 5 O 1.20661 * 112.29858 * 180.02562 * 4 3 2 6 6 C 1.33493 * 113.15535 * 359.70923 * 5 4 3 7 7 C 1.37357 * 106.34366 * 0.45736 * 6 5 4 8 8 C 1.47400 * 128.56486 * 179.85937 * 7 6 5 9 9 O 1.21613 * 119.99828 * 179.67868 * 8 7 6 10 10 N 1.34770 * 120.00140 * 359.67058 * 8 7 6 11 11 C 1.46500 * 120.00256 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46845 * 325.00694 * 11 10 8 13 13 C 1.53006 * 109.47249 * 84.99846 * 11 10 8 14 14 C 1.52997 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46978 * 299.99874 * 14 13 11 16 16 H 1.08992 * 109.47056 * 300.00064 * 15 14 13 17 17 N 1.46505 * 109.46958 * 180.02562 * 15 14 13 18 18 C 1.36939 * 119.99584 * 85.00133 * 17 15 14 19 19 H 1.07993 * 120.00301 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99501 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00187 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99877 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47103 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46983 * 120.00050 * 22 20 18 25 25 H 1.48495 * 109.47328 * 240.00239 * 22 20 18 26 26 C 1.52996 * 109.46891 * 60.00410 * 15 14 13 27 27 C 1.52997 * 109.47473 * 205.00145 * 11 10 8 28 28 H 1.08997 * 109.47530 * 59.99654 * 1 2 3 29 29 H 1.09003 * 109.46795 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46768 * 299.99855 * 1 2 3 31 31 H 1.08996 * 109.46878 * 240.00075 * 2 1 3 32 32 H 1.08997 * 109.47530 * 120.00346 * 2 1 3 33 33 H 1.08003 * 126.82830 * 180.31204 * 6 5 4 34 34 H 0.97005 * 120.00370 * 0.02562 * 10 8 7 35 35 H 1.09001 * 109.47002 * 60.00085 * 13 11 10 36 36 H 1.09000 * 109.47050 * 300.00351 * 13 11 10 37 37 H 1.09002 * 109.47045 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47375 * 59.99966 * 14 13 11 39 39 H 0.97001 * 119.99745 * 265.00017 * 17 15 14 40 40 H 0.96998 * 120.00284 * 179.97438 * 21 20 18 41 41 H 1.09004 * 109.47368 * 179.97438 * 26 15 14 42 42 H 1.09001 * 109.47372 * 59.99964 * 26 15 14 43 43 H 1.09002 * 109.47153 * 59.99757 * 27 11 10 44 44 H 1.09001 * 109.46832 * 299.99948 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2958 2.1640 -1.0338 5 8 2.6845 3.2626 -0.7208 6 6 2.7411 3.4426 0.6007 7 6 2.3295 2.2620 1.1696 8 6 2.2090 1.9238 2.5992 9 8 1.8188 0.8212 2.9324 10 7 2.5315 2.8363 3.5371 11 6 2.4123 2.5000 4.9580 12 1 1.5550 1.8432 5.1051 13 6 3.6850 1.7888 5.4223 14 6 3.5602 1.4370 6.9060 15 6 3.3664 2.7183 7.7194 16 1 4.2237 3.3750 7.5725 17 7 3.2475 2.3815 9.1402 18 6 4.3738 2.2238 9.9030 19 1 5.3496 2.3482 9.4573 20 6 4.2612 1.9052 11.2493 21 7 3.0719 1.7541 11.7926 22 14 5.7975 1.6908 12.2901 23 1 7.0005 1.9129 11.4484 24 1 5.7834 2.6750 13.4020 25 1 5.8299 0.3148 12.8473 26 6 2.0937 3.4294 7.2551 27 6 2.2187 3.7815 5.7710 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.0513 4.3376 1.1195 34 1 2.8426 3.7159 3.2714 35 1 4.5425 2.4455 5.2750 36 1 3.8229 0.8758 4.8431 37 1 4.4671 0.9307 7.2369 38 1 2.7028 0.7802 7.0529 39 1 2.3710 2.2701 9.5406 40 1 2.9932 1.5311 12.7333 41 1 1.9553 4.3420 7.8349 42 1 1.2363 2.7725 7.4020 43 1 1.3120 4.2881 5.4402 44 1 3.0761 4.4382 5.6238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034731530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:07 Heat of formation + Delta-G solvation = 12.759943 kcal Electronic energy + Delta-G solvation = -25029.337600 eV Core-core repulsion = 21370.345511 eV Total energy + Delta-G solvation = -3658.992089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.25696 -40.03993 -38.01129 -35.55645 -34.91103 -33.39839 -32.33806 -31.53535 -30.56990 -30.44494 -27.56955 -25.24587 -24.42675 -23.47599 -22.41019 -21.33829 -21.21263 -20.52022 -19.59130 -18.45538 -18.02928 -17.11751 -16.75863 -16.31839 -15.42846 -15.11047 -14.90150 -14.58962 -14.21258 -14.03061 -13.81252 -13.60030 -13.47680 -13.07525 -12.93264 -12.62575 -12.08492 -12.01719 -11.86933 -11.84088 -11.47907 -11.20189 -11.10863 -10.85323 -10.80895 -10.71106 -10.28807 -10.22205 -10.15063 -10.12795 -10.10287 -9.79458 -9.61697 -9.08668 -8.87169 -6.95192 -5.76627 -3.05165 0.71022 1.47383 2.54813 2.96945 2.99566 3.42821 3.48481 3.50677 3.67857 3.92746 4.47604 4.56776 4.60785 4.82710 4.88486 4.98198 5.01685 5.06168 5.13293 5.22172 5.49303 5.54407 5.55751 5.62618 5.63744 5.67848 5.78902 5.83084 5.85928 5.96055 5.98384 6.17919 6.19353 6.25537 6.43106 6.52454 6.59907 6.69355 6.96287 7.12774 7.27281 7.70540 7.84804 7.98554 8.42244 9.53300 10.11749 10.46075 11.46198 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.030245 B = 0.002464 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.562383 B =11359.059352 C =11568.328934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.074 3.926 4 N -0.359 5.359 5 O 0.097 5.903 6 C -0.009 4.009 7 C -0.249 4.249 8 C 0.592 3.408 9 O -0.523 6.523 10 N -0.718 5.718 11 C 0.147 3.853 12 H 0.091 0.909 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.726 5.726 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.226 0.774 34 H 0.395 0.605 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 4.682 -24.627 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.089 4.089 4 N -0.066 5.066 5 O 0.037 5.963 6 C -0.092 4.092 7 C -0.257 4.257 8 C 0.378 3.622 9 O -0.399 6.399 10 N -0.368 5.368 11 C 0.043 3.957 12 H 0.109 0.891 13 C -0.163 4.163 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.160 4.160 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.242 0.758 34 H 0.229 0.771 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.279 3.721 -25.603 26.079 hybrid contribution 0.796 0.286 1.511 1.732 sum -2.483 4.007 -24.092 24.549 Atomic orbital electron populations 1.21663 0.93529 1.02626 1.02169 1.20070 0.96828 0.87261 1.04521 1.24915 0.98808 0.98934 0.86255 1.73686 1.16662 0.92646 1.23583 1.84579 1.61960 1.26724 1.23008 1.26420 0.98538 1.00049 0.84179 1.22456 1.12191 0.95148 0.95866 1.16833 0.77678 0.84779 0.82928 1.90820 1.45886 1.21443 1.81762 1.46000 1.67742 1.16176 1.06893 1.21180 0.99814 0.97398 0.77266 0.89140 1.21906 0.96462 0.99980 0.97974 1.22232 1.02294 1.00767 0.92044 1.20237 0.94790 0.92856 0.85391 0.93608 1.42439 1.06619 1.83996 1.03536 1.19280 0.86935 1.39589 0.90955 0.91181 1.24742 0.96513 1.02801 0.97024 1.69668 1.21044 1.55192 1.12257 0.86144 0.82402 0.77340 0.80485 1.20592 1.21917 1.21898 1.21763 0.99780 1.01227 0.93180 1.21763 1.01776 0.96003 0.96184 0.92819 0.91372 0.91993 0.90042 0.87995 0.75801 0.77089 0.92261 0.92293 0.91747 0.92427 0.78301 0.93585 0.91287 0.91904 0.91805 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.05 -0.47 6.20 -27.88 -0.17 -0.65 16 3 C 0.07 0.79 6.84 -79.77 -0.55 0.24 16 4 N -0.36 -3.86 12.01 34.78 0.42 -3.44 16 5 O 0.10 0.83 11.06 18.65 0.21 1.04 16 6 C -0.01 -0.06 11.85 30.41 0.36 0.30 16 7 C -0.25 -2.42 6.47 -102.89 -0.67 -3.08 16 8 C 0.59 6.87 7.78 -12.53 -0.10 6.78 16 9 O -0.52 -7.97 15.36 5.27 0.08 -7.89 16 10 N -0.72 -6.81 5.07 -54.89 -0.28 -7.09 16 11 C 0.15 1.77 2.45 -67.93 -0.17 1.60 16 12 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 13 C -0.12 -1.73 5.49 -26.73 -0.15 -1.87 16 14 C -0.13 -2.32 5.50 -26.73 -0.15 -2.46 16 15 C 0.18 3.32 2.77 -67.93 -0.19 3.14 16 16 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 17 N -0.73 -17.76 5.12 -53.43 -0.27 -18.04 16 18 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 22 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C -0.12 -1.82 5.39 -26.71 -0.14 -1.96 16 27 C -0.12 -1.32 5.39 -26.71 -0.14 -1.47 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.10 7.11 -51.93 -0.37 0.73 16 33 H 0.23 0.28 7.68 -52.48 -0.40 -0.13 16 34 H 0.40 2.34 7.79 -40.82 -0.32 2.03 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 40 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -33.31 363.89 -7.44 -40.75 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.84 Total: 6.73 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -1.94 Total: -7.46 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.59 Total: -55.89 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: 0.29 Total: -6.86 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.31 -7.44 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034731530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.509 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds