Wall clock time and date at job start Tue Mar 31 2020 08:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47247 * 2 1 4 4 C 1.50700 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.35318 * 126.66640 * 89.99608 * 4 3 2 6 6 C 1.42275 * 103.92330 * 179.97438 * 5 4 3 7 7 C 1.48330 * 126.94158 * 179.97438 * 6 5 4 8 8 O 1.21500 * 119.99619 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00202 * 180.02562 * 7 6 5 10 10 C 1.47431 * 125.64933 * 5.17938 * 9 7 6 11 11 C 1.54905 * 104.83300 * 155.88765 * 10 9 7 12 12 C 1.55159 * 101.58007 * 37.01219 * 11 10 9 13 13 C 1.47024 * 125.65036 * 185.19973 * 9 7 6 14 14 H 1.08992 * 110.01103 * 300.53718 * 13 9 7 15 15 C 1.53008 * 109.87962 * 61.62423 * 13 9 7 16 16 N 1.46497 * 109.46842 * 183.40655 * 15 13 9 17 17 C 1.36939 * 119.99341 * 175.01898 * 16 15 13 18 18 H 1.07993 * 120.00638 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99321 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00502 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47131 * 270.00316 * 21 19 17 23 23 H 1.48502 * 109.47127 * 29.99780 * 21 19 17 24 24 H 1.48494 * 109.47142 * 150.00166 * 21 19 17 25 25 N 1.30991 * 106.12043 * 0.26421 * 6 5 4 26 26 O 1.20903 * 111.43658 * 359.53314 * 25 6 5 27 27 H 1.08997 * 109.46485 * 60.00021 * 1 2 3 28 28 H 1.08990 * 109.47247 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46683 * 300.00579 * 1 2 3 30 30 H 1.08995 * 109.47162 * 239.99238 * 2 1 3 31 31 H 1.09004 * 109.46772 * 119.99808 * 2 1 3 32 32 H 1.08997 * 109.47752 * 60.00075 * 3 2 1 33 33 H 1.08997 * 109.47360 * 299.99443 * 3 2 1 34 34 H 1.07998 * 128.03975 * 0.02562 * 5 4 3 35 35 H 1.09008 * 110.36240 * 37.05159 * 10 9 7 36 36 H 1.08997 * 110.45951 * 274.77610 * 10 9 7 37 37 H 1.08995 * 111.00756 * 278.93897 * 11 10 9 38 38 H 1.09002 * 111.00346 * 155.08169 * 11 10 9 39 39 H 1.09003 * 110.72011 * 206.13181 * 12 11 10 40 40 H 1.08997 * 110.71926 * 82.85766 * 12 11 10 41 41 H 1.09002 * 109.47019 * 63.40284 * 15 13 9 42 42 H 1.09001 * 109.46712 * 303.40927 * 15 13 9 43 43 H 0.96995 * 120.00051 * 355.01267 * 16 15 13 44 44 H 0.96999 * 120.00225 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3556 1.4421 -1.0844 6 6 5.6675 1.4428 -0.5339 7 6 6.9482 1.4423 -1.2820 8 8 6.9420 1.4417 -2.4970 9 7 8.1188 1.4426 -0.6141 10 6 8.2739 1.3351 0.8480 11 6 9.7007 0.7687 1.0550 12 6 10.4857 1.4802 -0.0786 13 6 9.4528 1.5504 -1.2230 14 1 9.6131 0.7266 -1.9183 15 6 9.5821 2.8853 -1.9595 16 7 10.8830 2.9488 -2.6302 17 6 11.1846 4.0112 -3.4399 18 1 10.4634 4.8019 -3.5844 19 6 12.4174 4.0716 -4.0750 20 7 13.2966 3.1082 -3.8986 21 14 12.8287 5.5204 -5.1802 22 1 12.4056 5.2178 -6.5711 23 1 12.1143 6.7296 -4.6975 24 1 14.2930 5.7657 -5.1504 25 7 5.5158 1.4376 0.7672 26 8 4.3469 1.4431 1.0759 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6768 1.9564 0.8899 33 1 1.6768 1.9563 -0.8900 34 1 4.0711 1.4423 -2.1263 35 1 7.5310 0.6514 1.2590 36 1 8.1840 2.3165 1.3138 37 1 9.7150 -0.3129 0.9208 38 1 10.0924 1.0446 2.0341 39 1 11.3522 0.8899 -0.3769 40 1 10.7874 2.4809 0.2306 41 1 9.5015 3.7041 -1.2446 42 1 8.7868 2.9700 -2.7002 43 1 11.5306 2.2384 -2.5007 44 1 14.1579 3.1503 -4.3427 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753601866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:52 Heat of formation + Delta-G solvation = 34.551939 kcal Electronic energy + Delta-G solvation = -25079.098168 eV Core-core repulsion = 21421.051051 eV Total energy + Delta-G solvation = -3658.047117 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.24484 -40.00215 -37.44081 -36.11089 -34.58782 -33.99377 -32.17153 -31.39829 -31.25576 -28.71873 -27.41258 -25.47152 -24.80618 -23.17908 -22.62485 -22.12045 -21.76678 -20.48145 -18.90717 -17.93161 -17.48212 -17.18789 -16.69832 -16.28925 -15.64143 -15.17639 -14.57690 -14.45521 -14.23479 -13.94976 -13.73731 -13.66107 -13.36342 -13.22232 -12.86432 -12.69987 -12.63683 -12.25877 -12.06216 -11.82063 -11.73194 -11.58069 -11.17946 -11.01133 -10.87755 -10.81532 -10.62853 -10.48054 -10.40232 -10.08532 -10.02300 -9.67604 -9.65517 -8.82581 -8.50516 -6.88031 -5.72161 -3.00498 0.98866 1.51099 2.66268 2.87173 3.20439 3.47801 3.52558 3.54327 3.81459 4.13538 4.48139 4.49597 4.63313 4.66270 4.69274 4.79867 4.85566 5.01899 5.06671 5.15045 5.20926 5.28111 5.29212 5.42821 5.53374 5.57856 5.62725 5.67241 5.69223 5.72723 5.79834 5.83169 5.97174 6.05578 6.07794 6.18556 6.43179 6.52497 6.82561 6.94945 7.53051 7.75618 7.81622 8.15738 8.46619 9.57765 10.13471 10.49727 11.50880 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.002806 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.211086 B = 9977.084982 C =10889.708243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.038 4.038 4 C -0.034 4.034 5 C -0.180 4.180 6 C -0.013 4.013 7 C 0.605 3.395 8 O -0.512 6.512 9 N -0.597 5.597 10 C 0.102 3.898 11 C -0.134 4.134 12 C -0.121 4.121 13 C 0.130 3.870 14 H 0.081 0.919 15 C 0.146 3.854 16 N -0.727 5.727 17 C -0.234 4.234 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.282 1.282 24 H -0.291 1.291 25 N -0.330 5.330 26 O 0.117 5.883 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.180 0.820 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.016 0.984 42 H 0.036 0.964 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.382 -7.649 14.148 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.076 4.076 4 C -0.097 4.097 5 C -0.202 4.202 6 C -0.172 4.172 7 C 0.391 3.609 8 O -0.386 6.386 9 N -0.331 5.331 10 C -0.021 4.021 11 C -0.172 4.172 12 C -0.159 4.159 13 C 0.028 3.972 14 H 0.099 0.901 15 C 0.018 3.982 16 N -0.372 5.372 17 C -0.366 4.366 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.208 1.208 24 H -0.218 1.218 25 N -0.032 5.032 26 O 0.043 5.957 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.197 0.803 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.218 0.782 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.541 -7.494 14.341 27.748 hybrid contribution 0.204 0.616 -1.338 1.487 sum -22.337 -6.878 13.003 26.746 Atomic orbital electron populations 1.21766 0.94812 1.02237 1.02181 1.21572 0.96391 0.94987 1.03222 1.20256 0.83258 0.99051 1.05069 1.24458 0.96139 1.03633 0.85506 1.22445 0.89682 1.06492 1.01571 1.23528 0.96711 1.06968 0.90026 1.16475 0.80620 0.77863 0.85964 1.90854 1.86008 1.49590 1.12109 1.48341 1.05518 1.70921 1.08285 1.22442 0.97952 1.01450 0.80267 1.22820 0.94214 1.00468 0.99738 1.22691 0.97303 1.02273 0.93620 1.21914 0.79644 1.00230 0.95408 0.90076 1.20938 0.90420 0.92217 0.94622 1.42187 1.12954 1.26427 1.55612 1.19217 0.98701 0.99084 1.19567 0.91248 1.24728 0.96734 0.98525 1.01073 1.69654 1.07624 1.33386 1.47685 0.86163 0.77170 0.81973 0.80748 1.21702 1.20804 1.21774 1.74262 0.96815 1.16475 1.15686 1.84771 1.11280 1.66142 1.33535 0.92350 0.92256 0.92376 0.91199 0.91276 0.89095 0.88224 0.80251 0.90010 0.91159 0.90796 0.89778 0.89510 0.89734 0.96607 0.94654 0.78248 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.20 16 2 C -0.12 -0.60 5.92 -26.73 -0.16 -0.76 16 3 C -0.04 -0.20 5.78 -27.89 -0.16 -0.36 16 4 C -0.03 -0.31 6.73 -35.35 -0.24 -0.55 16 5 C -0.18 -2.06 10.92 -39.07 -0.43 -2.48 16 6 C -0.01 -0.19 7.01 -82.52 -0.58 -0.77 16 7 C 0.61 10.74 7.60 -12.11 -0.09 10.64 16 8 O -0.51 -10.79 16.14 5.37 0.09 -10.70 16 9 N -0.60 -9.95 3.06 -163.93 -0.50 -10.45 16 10 C 0.10 1.34 6.01 -2.53 -0.02 1.33 16 11 C -0.13 -1.59 7.09 -24.58 -0.17 -1.77 16 12 C -0.12 -1.86 6.01 -24.90 -0.15 -2.01 16 13 C 0.13 2.41 2.94 -66.95 -0.20 2.21 16 14 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 15 C 0.15 3.32 5.64 -4.04 -0.02 3.30 16 16 N -0.73 -19.42 5.44 -59.91 -0.33 -19.74 16 17 C -0.23 -6.90 9.99 -15.06 -0.15 -7.05 16 18 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 21 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 N -0.33 -4.30 9.45 33.30 0.31 -3.99 16 26 O 0.12 1.26 11.18 17.25 0.19 1.46 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.08 1.02 6.56 -51.92 -0.34 0.67 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.38 7.79 -51.93 -0.40 0.98 16 41 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 42 H 0.04 0.89 6.93 -51.93 -0.36 0.53 16 43 H 0.38 10.46 7.40 -40.82 -0.30 10.16 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -34.47 364.88 -7.99 -42.46 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.87 Total: 4.41 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.09 Total: 1.01 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.21 Total: -62.31 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.28 Total: -9.24 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.47 -7.99 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.013 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds