Wall clock time and date at job start Tue Mar 31 2020 09:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46950 * 2 1 4 4 H 1.09001 * 109.47284 * 305.00301 * 3 2 1 5 5 C 1.50701 * 109.47336 * 184.99742 * 3 2 1 6 6 H 1.07995 * 120.00097 * 240.00158 * 5 3 2 7 7 C 1.37879 * 119.99695 * 59.99967 * 5 3 2 8 8 N 1.31516 * 120.00066 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00026 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47459 * 90.00006 * 9 7 5 11 11 H 1.48499 * 109.47360 * 210.00134 * 9 7 5 12 12 H 1.48506 * 109.47186 * 330.00073 * 9 7 5 13 13 N 1.46506 * 109.47059 * 64.99815 * 3 2 1 14 14 C 1.34780 * 120.00073 * 274.99766 * 13 3 2 15 15 O 1.21596 * 119.99567 * 0.02562 * 14 13 3 16 16 N 1.34771 * 119.99947 * 179.97438 * 14 13 3 17 17 C 1.40146 * 119.99875 * 174.68936 * 16 14 13 18 18 C 1.38834 * 120.01770 * 326.55745 * 17 16 14 19 19 C 1.38099 * 119.98967 * 179.78756 * 18 17 16 20 20 C 1.38714 * 120.01001 * 0.49308 * 19 18 17 21 21 O 1.35983 * 119.98512 * 179.72204 * 20 19 18 22 22 C 1.42901 * 117.00048 * 0.02562 * 21 20 19 23 23 C 1.52993 * 109.47445 * 180.02562 * 22 21 20 24 24 N 1.46900 * 109.46981 * 64.99918 * 23 22 21 25 25 C 1.38715 * 120.03086 * 359.73903 * 20 19 18 26 26 C 1.38098 * 120.01468 * 0.02836 * 25 20 19 27 27 H 1.09000 * 109.47277 * 300.00054 * 1 2 3 28 28 H 1.09001 * 109.47161 * 60.00071 * 1 2 3 29 29 H 1.09005 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47277 * 239.99946 * 2 1 3 31 31 H 1.09001 * 109.46636 * 119.99947 * 2 1 3 32 32 H 0.96996 * 120.00273 * 179.97438 * 8 7 5 33 33 H 0.96995 * 119.99839 * 95.00092 * 13 3 2 34 34 H 0.97002 * 120.00174 * 354.68742 * 16 14 13 35 35 H 1.08001 * 120.00696 * 0.03236 * 18 17 16 36 36 H 1.08001 * 119.99556 * 180.23350 * 19 18 17 37 37 H 1.09000 * 109.47173 * 300.00595 * 22 21 20 38 38 H 1.09000 * 109.47051 * 60.00173 * 22 21 20 39 39 H 1.09003 * 109.47397 * 185.00146 * 23 22 21 40 40 H 1.09001 * 109.47017 * 305.00164 * 23 22 21 41 41 H 1.00900 * 111.00371 * 179.97438 * 24 23 22 42 42 H 1.00893 * 111.00258 * 303.95453 * 24 23 22 43 43 H 1.08002 * 119.98952 * 180.02562 * 25 20 19 44 44 H 1.07994 * 120.00877 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8801 -1.3811 10 1 6.5539 -0.3518 -0.7597 11 1 6.3835 0.9216 -2.8164 12 1 6.5575 2.0721 -0.6888 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3417 2.6318 0.4319 16 7 0.0782 3.2665 2.5187 17 6 -1.1413 3.9520 2.6025 18 6 -1.6436 4.6143 1.4906 19 6 -2.8475 5.2859 1.5726 20 6 -3.5498 5.3074 2.7686 21 8 -4.7324 5.9737 2.8504 22 6 -5.1916 6.6282 1.6659 23 6 -6.5269 7.3188 1.9498 24 7 -6.3241 8.3915 2.9328 25 6 -3.0462 4.6500 3.8814 26 6 -1.8448 3.9740 3.7993 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0612 -2.9497 33 1 2.2718 2.1232 1.9978 34 1 0.6655 3.2253 3.2897 35 1 -1.0949 4.6009 0.5604 36 1 -3.2402 5.7980 0.7066 37 1 -4.4578 7.3712 1.3536 38 1 -5.3241 5.8926 0.8725 39 1 -6.9206 7.7424 1.0258 40 1 -7.2350 6.5914 2.3467 41 1 -7.1920 8.8637 3.1370 42 1 -5.8995 8.0343 3.7754 43 1 -3.5937 4.6669 4.8121 44 1 -1.4525 3.4625 4.6658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415948607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:24 Heat of formation + Delta-G solvation = -43.628501 kcal Electronic energy + Delta-G solvation = -24850.681176 eV Core-core repulsion = 21189.243900 eV Total energy + Delta-G solvation = -3661.437275 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.42728 -39.50499 -37.59993 -35.40745 -34.78596 -33.77101 -32.35698 -30.98384 -30.84244 -29.05428 -27.88672 -26.68106 -23.51061 -23.28053 -22.48381 -21.36560 -20.52885 -19.50368 -18.35212 -18.14003 -17.26860 -16.55940 -16.11119 -15.94771 -15.65807 -15.08741 -14.76091 -14.48718 -14.37097 -14.08732 -13.86083 -13.48339 -13.15016 -12.84155 -12.69437 -12.55228 -12.42392 -12.10878 -11.83179 -11.57042 -11.25898 -11.18253 -10.99459 -10.86579 -10.79737 -10.31896 -10.17972 -9.74594 -9.52494 -9.34786 -9.10789 -9.04632 -8.87877 -8.51963 -7.90508 -7.43300 -6.13726 -4.23046 1.40908 1.54491 3.07855 3.23192 3.24740 3.30955 3.34595 3.67571 4.08370 4.16107 4.31339 4.58918 4.87250 4.89337 4.95100 5.01983 5.07614 5.18065 5.23201 5.37612 5.41818 5.53264 5.68392 6.01370 6.08379 6.41201 6.47214 6.48656 6.50271 6.60636 6.68422 6.69126 7.03008 7.05063 7.05407 7.15740 7.36355 7.38029 7.44763 7.46631 7.63698 7.86399 7.99041 8.18022 8.73215 8.85192 9.26380 9.45818 10.91604 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.029516 B = 0.002486 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.418268 B =11258.213214 C =11346.151811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.719 5.719 14 C 0.692 3.308 15 O -0.577 6.577 16 N -0.697 5.697 17 C 0.149 3.851 18 C -0.081 4.081 19 C -0.184 4.184 20 C 0.101 3.899 21 O -0.322 6.322 22 C 0.058 3.942 23 C 0.065 3.935 24 N -0.851 5.851 25 C -0.133 4.133 26 C -0.119 4.119 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.099 0.901 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.385 0.615 34 H 0.401 0.599 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.037 0.963 41 H 0.341 0.659 42 H 0.350 0.650 43 H 0.128 0.872 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.600 10.457 11.733 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.370 5.370 14 C 0.393 3.607 15 O -0.455 6.455 16 N -0.345 5.345 17 C 0.053 3.947 18 C -0.101 4.101 19 C -0.203 4.203 20 C 0.056 3.944 21 O -0.236 6.236 22 C -0.018 4.018 23 C -0.066 4.066 24 N -0.382 5.382 25 C -0.152 4.152 26 C -0.140 4.140 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.235 0.765 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.146 0.854 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.835 10.603 10.190 20.889 hybrid contribution 0.993 -0.700 0.952 1.543 sum -13.842 9.903 11.143 20.343 Atomic orbital electron populations 1.21814 0.98254 0.97879 1.01305 1.21961 0.92699 0.99893 1.02210 1.18716 0.93981 0.88884 0.79957 0.93237 1.21219 0.90654 1.39066 1.06307 0.92098 1.24880 0.98619 0.94822 0.95372 1.69894 1.35125 1.37518 1.09345 0.86445 0.84827 0.78414 0.77385 1.20565 1.21073 1.19890 1.45836 1.13058 1.58863 1.19261 1.16117 0.83559 0.78682 0.82375 1.90900 1.51716 1.64527 1.38342 1.42857 1.20201 1.56503 1.14971 1.17446 0.87444 0.95116 0.94666 1.21093 0.95807 0.94016 0.99221 1.21113 0.97311 1.04846 0.97073 1.18835 0.86043 0.95181 0.94343 1.85946 1.35478 1.65447 1.36759 1.22866 0.96356 0.95708 0.86892 1.21818 0.94744 0.92482 0.97542 1.58722 1.31357 1.30612 1.17480 1.20057 0.96680 1.01060 0.97382 1.20634 0.94394 1.01482 0.97466 0.94266 0.93171 0.96031 0.88274 0.95117 0.92536 0.78256 0.76457 0.84034 0.85553 0.91105 0.91548 0.89165 0.94450 0.84628 0.83725 0.85364 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.29 7.09 2.24 -69.08 -0.15 6.94 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.72 -14.54 5.03 -59.81 -0.30 -14.84 16 14 C 0.69 13.60 6.87 -86.92 -0.60 13.00 16 15 O -0.58 -13.28 11.17 5.28 0.06 -13.22 16 16 N -0.70 -10.58 5.36 -14.19 -0.08 -10.66 16 17 C 0.15 2.24 6.28 -83.61 -0.53 1.72 16 18 C -0.08 -1.29 8.65 -39.41 -0.34 -1.63 16 19 C -0.18 -2.53 9.03 -39.46 -0.36 -2.88 16 20 C 0.10 1.30 6.69 -39.23 -0.26 1.04 16 21 O -0.32 -3.69 9.66 -19.69 -0.19 -3.88 16 22 C 0.06 0.53 5.08 37.15 0.19 0.72 16 23 C 0.07 0.47 7.21 -3.83 -0.03 0.44 16 24 N -0.85 -6.25 9.62 -10.37 -0.10 -6.35 16 25 C -0.13 -1.59 9.98 -39.46 -0.39 -1.99 16 26 C -0.12 -1.47 9.96 -39.41 -0.39 -1.86 16 27 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 28 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.39 6.68 8.56 -40.82 -0.35 6.33 16 34 H 0.40 4.68 8.83 -40.82 -0.36 4.32 16 35 H 0.14 2.58 6.42 -52.49 -0.34 2.24 16 36 H 0.13 1.51 6.29 -52.49 -0.33 1.18 16 37 H 0.07 0.67 7.66 -51.93 -0.40 0.27 16 38 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.34 1.79 9.08 -39.29 -0.36 1.43 16 42 H 0.35 2.67 8.55 -39.30 -0.34 2.33 16 43 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -30.88 357.74 -9.04 -39.92 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -6.35 Total: 15.07 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -3.09 Total: -2.99 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.15 Total: -55.65 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.13 Total: -17.10 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.88 -9.04 -39.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415948607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.711 kcal (2) G-P(sol) polarization free energy of solvation -30.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds