Wall clock time and date at job start Tue Mar 31 2020 09:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46950 * 2 1 4 4 H 1.09001 * 109.47284 * 305.00301 * 3 2 1 5 5 C 1.50701 * 109.47336 * 184.99742 * 3 2 1 6 6 H 1.07995 * 120.00097 * 240.00158 * 5 3 2 7 7 C 1.37879 * 119.99695 * 59.99967 * 5 3 2 8 8 N 1.31516 * 120.00066 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00026 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47459 * 90.00006 * 9 7 5 11 11 H 1.48499 * 109.47360 * 210.00134 * 9 7 5 12 12 H 1.48506 * 109.47186 * 330.00073 * 9 7 5 13 13 N 1.46506 * 109.47059 * 64.99815 * 3 2 1 14 14 C 1.34780 * 120.00073 * 274.99766 * 13 3 2 15 15 O 1.21596 * 119.99567 * 0.02562 * 14 13 3 16 16 N 1.34771 * 119.99947 * 179.97438 * 14 13 3 17 17 C 1.40146 * 119.99875 * 174.68936 * 16 14 13 18 18 C 1.38834 * 120.01770 * 326.55745 * 17 16 14 19 19 C 1.38099 * 119.98967 * 179.78756 * 18 17 16 20 20 C 1.38714 * 120.01001 * 0.49308 * 19 18 17 21 21 O 1.35983 * 119.98512 * 179.72204 * 20 19 18 22 22 C 1.42901 * 117.00048 * 0.02562 * 21 20 19 23 23 C 1.52993 * 109.47445 * 180.02562 * 22 21 20 24 24 N 1.46900 * 109.46981 * 64.99918 * 23 22 21 25 25 C 1.38715 * 120.03086 * 359.73903 * 20 19 18 26 26 C 1.38098 * 120.01468 * 0.02836 * 25 20 19 27 27 H 1.09000 * 109.47277 * 300.00054 * 1 2 3 28 28 H 1.09001 * 109.47161 * 60.00071 * 1 2 3 29 29 H 1.09005 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47277 * 239.99946 * 2 1 3 31 31 H 1.09001 * 109.46636 * 119.99947 * 2 1 3 32 32 H 0.96996 * 120.00273 * 179.97438 * 8 7 5 33 33 H 0.96995 * 119.99839 * 95.00092 * 13 3 2 34 34 H 0.97002 * 120.00174 * 354.68742 * 16 14 13 35 35 H 1.08001 * 120.00696 * 0.03236 * 18 17 16 36 36 H 1.08001 * 119.99556 * 180.23350 * 19 18 17 37 37 H 1.09000 * 109.47173 * 300.00595 * 22 21 20 38 38 H 1.09000 * 109.47051 * 60.00173 * 22 21 20 39 39 H 1.09003 * 109.47397 * 185.00146 * 23 22 21 40 40 H 1.09001 * 109.47017 * 305.00164 * 23 22 21 41 41 H 1.00900 * 111.00371 * 179.97438 * 24 23 22 42 42 H 1.00893 * 111.00258 * 303.95453 * 24 23 22 43 43 H 1.08002 * 119.98952 * 180.02562 * 25 20 19 44 44 H 1.07994 * 120.00877 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3366 -2.1728 9 14 6.0049 0.8801 -1.3811 10 1 6.5539 -0.3518 -0.7597 11 1 6.3835 0.9216 -2.8164 12 1 6.5575 2.0721 -0.6888 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3417 2.6318 0.4319 16 7 0.0782 3.2665 2.5187 17 6 -1.1413 3.9520 2.6025 18 6 -1.6436 4.6143 1.4906 19 6 -2.8475 5.2859 1.5726 20 6 -3.5498 5.3074 2.7686 21 8 -4.7324 5.9737 2.8504 22 6 -5.1916 6.6282 1.6659 23 6 -6.5269 7.3188 1.9498 24 7 -6.3241 8.3915 2.9328 25 6 -3.0462 4.6500 3.8814 26 6 -1.8448 3.9740 3.7993 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0612 -2.9497 33 1 2.2718 2.1232 1.9978 34 1 0.6655 3.2253 3.2897 35 1 -1.0949 4.6009 0.5604 36 1 -3.2402 5.7980 0.7066 37 1 -4.4578 7.3712 1.3536 38 1 -5.3241 5.8926 0.8725 39 1 -6.9206 7.7424 1.0258 40 1 -7.2350 6.5914 2.3467 41 1 -7.1920 8.8637 3.1370 42 1 -5.8995 8.0343 3.7754 43 1 -3.5937 4.6669 4.8121 44 1 -1.4525 3.4625 4.6658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415948607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:23 Heat of formation + Delta-G solvation = -66.559241 kcal Electronic energy + Delta-G solvation = -24851.675527 eV Core-core repulsion = 21189.243900 eV Total energy + Delta-G solvation = -3662.431627 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66693 -40.71790 -38.75600 -37.00928 -35.74291 -35.02099 -34.22317 -32.65019 -32.01718 -30.06416 -29.08300 -28.29649 -25.10202 -24.44054 -23.75934 -22.31776 -21.97667 -21.30919 -19.74825 -19.27125 -18.57958 -17.82124 -17.27652 -17.10025 -16.84989 -16.53047 -16.13519 -15.93987 -15.28649 -15.22596 -15.12774 -14.75023 -14.54515 -14.34432 -14.18822 -13.57927 -13.53983 -13.39619 -13.19412 -13.15288 -12.87970 -12.66050 -12.57796 -12.20443 -12.14321 -12.05762 -11.81580 -11.58654 -11.12585 -11.00543 -10.71275 -10.52935 -9.95242 -9.65485 -9.65114 -8.58458 -8.15132 -6.32095 0.37067 0.43903 1.45705 1.46306 1.56455 1.84815 2.25622 2.26351 2.43390 2.89047 3.14421 3.51080 3.59988 3.84656 3.93936 4.06991 4.23674 4.30169 4.40571 4.45707 4.50612 4.57173 4.58742 4.70440 4.77392 4.82551 4.97141 5.07391 5.10358 5.24116 5.38398 5.41191 5.45586 5.52406 5.57489 5.63420 5.78623 5.88060 5.94430 6.16153 6.18324 6.33348 6.46526 6.56791 6.76220 7.30249 7.36697 7.76620 8.90269 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.029516 B = 0.002486 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.418268 B =11258.213214 C =11346.151811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.002 1.002 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.615 6.615 16 N -0.677 5.677 17 C 0.123 3.877 18 C -0.105 4.105 19 C -0.191 4.191 20 C 0.102 3.898 21 O -0.322 6.322 22 C 0.051 3.949 23 C 0.069 3.931 24 N -0.860 5.860 25 C -0.130 4.130 26 C -0.103 4.103 27 H 0.041 0.959 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.402 0.598 34 H 0.420 0.580 35 H 0.108 0.892 36 H 0.135 0.865 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.042 0.958 41 H 0.353 0.647 42 H 0.348 0.652 43 H 0.158 0.842 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.931 10.861 14.349 23.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.016 0.984 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.495 6.495 16 N -0.327 5.327 17 C 0.028 3.972 18 C -0.126 4.126 19 C -0.211 4.211 20 C 0.057 3.943 21 O -0.236 6.236 22 C -0.024 4.024 23 C -0.062 4.062 24 N -0.392 5.392 25 C -0.149 4.149 26 C -0.123 4.123 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.258 0.742 35 H 0.126 0.874 36 H 0.153 0.847 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.060 0.940 41 H 0.167 0.833 42 H 0.160 0.840 43 H 0.175 0.825 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.181 11.046 12.882 22.768 hybrid contribution 0.948 -0.720 0.161 1.201 sum -14.233 10.326 13.043 21.893 Atomic orbital electron populations 1.21633 0.97099 0.98811 1.00130 1.21806 0.93599 0.99316 1.01295 1.18259 0.93422 0.88786 0.80240 0.98365 1.21559 0.91319 1.38885 1.06698 0.90987 1.25759 1.03259 0.94442 0.95038 1.70049 1.37024 1.38323 1.09873 0.85366 0.79158 0.78827 0.77089 1.19673 1.21371 1.18980 1.45436 1.13864 1.59074 1.18455 1.16199 0.82900 0.78581 0.83102 1.90885 1.52714 1.65765 1.40140 1.42491 1.20746 1.55440 1.14051 1.17662 0.87841 0.96057 0.95626 1.20948 0.96910 0.96113 0.98598 1.21178 0.96785 1.04899 0.98215 1.19021 0.86287 0.94843 0.94170 1.85962 1.34629 1.65177 1.37816 1.23069 0.97220 0.95704 0.86431 1.21836 0.93513 0.92541 0.98332 1.58731 1.32278 1.30715 1.17442 1.20455 0.96481 0.99812 0.98118 1.20932 0.93812 1.00458 0.97107 0.94021 0.95704 0.93870 0.90945 0.94019 0.92609 0.76367 0.74226 0.87417 0.84715 0.91594 0.91145 0.87624 0.93999 0.83306 0.83964 0.82467 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.51 71.98 0.61 -4.87 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.30 15.11 2.24 44.24 0.10 15.21 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -28.56 8.73 25.60 0.22 -28.33 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.91 -52.06 11.29 21.45 0.24 -51.82 16 9 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.72 -29.14 5.03 -461.39 -2.32 -31.46 16 14 C 0.69 27.61 6.87 179.05 1.23 28.84 16 15 O -0.61 -29.59 11.17 -4.02 -0.04 -29.63 16 16 N -0.68 -20.05 5.36 -317.06 -1.70 -21.75 16 17 C 0.12 3.61 6.28 38.10 0.24 3.85 16 18 C -0.10 -3.46 8.65 22.38 0.19 -3.27 16 19 C -0.19 -5.28 9.03 22.35 0.20 -5.08 16 20 C 0.10 2.48 6.69 22.50 0.15 2.63 16 21 O -0.32 -6.79 9.66 -93.35 -0.90 -7.69 16 22 C 0.05 0.88 5.08 71.98 0.37 1.24 16 23 C 0.07 0.87 7.21 86.30 0.62 1.49 16 24 N -0.86 -11.14 9.62 -186.72 -1.80 -12.93 16 25 C -0.13 -2.74 9.98 22.35 0.22 -2.51 16 26 C -0.10 -2.25 9.96 22.38 0.22 -2.02 16 27 H 0.04 1.87 5.64 -2.39 -0.01 1.85 16 28 H 0.02 1.22 7.84 -2.39 -0.02 1.20 16 29 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.07 3.99 5.95 -2.39 -0.01 3.98 16 31 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.40 13.56 8.56 -92.71 -0.79 12.77 16 34 H 0.42 8.98 8.83 -92.71 -0.82 8.16 16 35 H 0.11 4.26 6.42 -2.91 -0.02 4.24 16 36 H 0.14 3.30 6.29 -2.91 -0.02 3.29 16 37 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 38 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.35 3.07 9.08 -89.69 -0.81 2.25 16 42 H 0.35 4.71 8.55 -89.70 -0.77 3.95 16 43 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 44 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -68.91 357.74 -1.62 -70.53 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -2.13 Total: 38.31 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.00 Total: 2.63 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -5.57 Total: -117.96 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.95 Total: -37.33 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -68.91 -1.62 -70.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415948607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.974 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds