Wall clock time and date at job start Tue Mar 31 2020 09:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47303 * 2 1 4 4 C 1.53008 * 109.47056 * 120.00007 * 2 1 3 5 5 N 1.46498 * 109.47154 * 175.00524 * 4 2 1 6 6 C 1.46507 * 119.99785 * 269.99851 * 5 4 2 7 7 C 1.36933 * 120.00532 * 89.99304 * 5 4 2 8 8 H 1.08007 * 119.99543 * 23.63356 * 7 5 4 9 9 C 1.38810 * 120.00480 * 203.63158 * 7 5 4 10 10 N 1.31626 * 119.99878 * 11.29642 * 9 7 5 11 11 Si 1.86801 * 120.00332 * 191.30090 * 9 7 5 12 12 H 1.48499 * 109.46935 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47203 * 119.99777 * 11 9 7 14 14 H 1.48499 * 109.46966 * 239.99760 * 11 9 7 15 15 N 1.46503 * 109.47322 * 239.99524 * 2 1 3 16 16 C 1.34778 * 119.99689 * 85.00056 * 15 2 1 17 17 O 1.21588 * 119.99944 * 359.72430 * 16 15 2 18 18 C 1.47511 * 119.99941 * 179.72303 * 16 15 2 19 19 O 1.35183 * 127.15226 * 0.02830 * 18 16 15 20 20 N 1.21482 * 111.55050 * 179.97438 * 19 18 16 21 21 C 1.29068 * 111.68436 * 359.91683 * 20 19 18 22 22 C 1.35246 * 127.15374 * 179.70965 * 18 16 15 23 23 C 1.50123 * 131.33199 * 1.11485 * 22 18 16 24 24 C 1.53574 * 108.07857 * 163.17765 * 23 22 18 25 25 C 1.53002 * 109.80931 * 49.81791 * 24 23 22 26 26 C 1.50655 * 130.33524 * 180.30152 * 21 20 19 27 27 H 1.08998 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47142 * 300.00261 * 1 2 3 29 29 H 1.09001 * 109.46931 * 60.00721 * 1 2 3 30 30 H 1.09006 * 109.46817 * 294.99804 * 4 2 1 31 31 H 1.08988 * 109.47331 * 54.99880 * 4 2 1 32 32 H 1.08996 * 109.47348 * 94.55212 * 6 5 4 33 33 H 1.08997 * 109.47140 * 214.55722 * 6 5 4 34 34 H 1.09001 * 109.46477 * 334.55315 * 6 5 4 35 35 H 0.96994 * 119.99967 * 180.02562 * 10 9 7 36 36 H 0.96998 * 119.99904 * 264.72619 * 15 2 1 37 37 H 1.08994 * 109.90580 * 43.41461 * 23 22 18 38 38 H 1.09000 * 109.53276 * 282.71759 * 23 22 18 39 39 H 1.09004 * 109.41125 * 289.71810 * 24 23 22 40 40 H 1.08998 * 109.41667 * 169.92485 * 24 23 22 41 41 H 1.08996 * 109.37952 * 168.10566 * 25 24 23 42 42 H 1.09008 * 109.28548 * 48.38978 * 25 24 23 43 43 H 1.08998 * 109.74368 * 282.89542 * 26 21 20 44 44 H 1.09004 * 109.73685 * 43.54762 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1259 -1.9919 0.5613 7 6 4.2798 0.1649 1.7241 8 1 3.8834 0.8070 2.4968 9 6 5.5798 0.3445 1.2717 10 7 5.9918 -0.2793 0.1883 11 14 6.7447 1.4714 2.2005 12 1 6.0432 2.0490 3.3750 13 1 7.9237 0.6943 2.6603 14 1 7.1931 2.5672 1.3041 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8532 1.1601 -2.4130 18 6 2.6447 -0.7123 -3.5600 19 8 3.0105 -2.0097 -3.6614 20 7 3.3773 -2.2833 -4.7868 21 6 3.3136 -1.2602 -5.5710 22 6 2.8240 -0.1842 -4.7921 23 6 2.6124 1.2070 -5.3149 24 6 3.3638 1.3345 -6.6482 25 6 3.0063 0.1586 -7.5594 26 6 3.6554 -1.1289 -7.0324 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.7516 -0.1583 2.1370 31 1 1.6054 -1.7197 1.2953 32 1 4.3537 -1.7641 -0.4799 33 1 5.0470 -2.2390 1.0891 34 1 3.4425 -2.8399 0.6067 35 1 6.9002 -0.1541 -0.1275 36 1 2.2529 -1.6309 -1.1515 37 1 3.0006 1.9344 -4.6021 38 1 1.5478 1.3784 -5.4742 39 1 4.4375 1.3340 -6.4604 40 1 3.0826 2.2685 -7.1347 41 1 3.3683 0.3593 -8.5677 42 1 1.9233 0.0366 -7.5816 43 1 4.7372 -1.0744 -7.1540 44 1 3.2664 -1.9874 -7.5800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754319378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:58 Heat of formation + Delta-G solvation = 33.937881 kcal Electronic energy + Delta-G solvation = -26448.680371 eV Core-core repulsion = 22790.606627 eV Total energy + Delta-G solvation = -3658.073745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.74659 -39.28887 -37.75237 -36.39992 -34.09498 -32.84229 -32.25571 -31.36196 -30.40287 -29.43512 -26.17715 -25.64218 -25.14989 -23.48768 -23.11602 -21.55326 -20.22259 -20.12969 -19.62168 -17.80410 -17.49919 -16.80497 -15.71121 -15.65374 -15.05160 -14.83808 -14.66034 -14.28433 -14.02435 -13.78313 -13.63824 -13.38130 -13.07402 -12.90252 -12.61740 -12.49252 -12.16864 -12.02245 -11.70102 -11.46164 -11.13092 -11.10346 -11.03317 -10.86562 -10.78383 -10.57855 -10.54817 -10.21488 -9.96391 -9.88092 -9.81226 -9.75643 -9.27128 -8.64496 -8.45031 -6.75321 -5.72259 -3.19493 1.12226 2.20926 2.93494 3.38543 3.45340 3.46245 3.47597 3.69675 3.94293 4.50106 4.53619 4.69532 4.72916 4.98480 5.09248 5.20507 5.32103 5.36453 5.40131 5.48135 5.57683 5.63373 5.66324 5.71683 5.81440 5.84810 5.90755 5.96094 6.05910 6.08478 6.16410 6.20425 6.26895 6.44501 6.49012 6.66365 6.82160 7.01163 7.33667 7.69808 7.81324 7.85825 8.27869 8.39208 8.53437 9.22827 9.85272 10.33435 11.32476 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.004572 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.679790 B = 6122.742944 C = 6810.879331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 H 0.090 0.910 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.159 3.841 7 C -0.257 4.257 8 H 0.069 0.931 9 C 0.006 3.994 10 N -0.903 5.903 11 Si 0.902 3.098 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.680 5.680 16 C 0.607 3.393 17 O -0.523 6.523 18 C -0.060 4.060 19 O 0.102 5.898 20 N -0.338 5.338 21 C 0.013 3.987 22 C -0.133 4.133 23 C -0.045 4.045 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.038 4.038 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.043 0.957 34 H -0.004 1.004 35 H 0.251 0.749 36 H 0.402 0.598 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 -1.345 -12.388 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.008 3.992 3 H 0.108 0.892 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.015 3.985 7 C -0.387 4.387 8 H 0.087 0.913 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.328 5.328 16 C 0.390 3.610 17 O -0.400 6.400 18 C -0.124 4.124 19 O 0.033 5.967 20 N -0.041 5.041 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.083 4.083 24 C -0.159 4.159 25 C -0.155 4.155 26 C -0.076 4.076 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.015 0.985 35 H 0.061 0.939 36 H 0.237 0.763 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.636 -1.786 -12.590 15.371 hybrid contribution 0.881 0.832 0.347 1.261 sum -7.755 -0.954 -12.243 14.524 Atomic orbital electron populations 1.22159 0.96465 1.01367 1.01894 1.22032 0.91932 0.99278 0.85923 0.89231 1.21217 0.85887 0.97366 0.94143 1.43917 0.99023 1.20914 1.68133 1.20873 0.94666 0.85053 0.97928 1.19213 0.94603 1.10579 1.14294 0.91339 1.25032 0.98900 0.99015 0.96314 1.70057 1.17123 1.45537 1.22047 0.86217 0.81094 0.80237 0.79177 1.20295 1.21692 1.21800 1.45738 1.64192 1.14162 1.08746 1.16409 0.78083 0.85531 0.81008 1.90794 1.51271 1.14050 1.83895 1.23642 1.05914 0.85395 0.97479 1.85253 1.61305 1.25458 1.24655 1.73401 1.15559 1.23948 0.91236 1.23330 1.02880 0.89333 0.99249 1.21014 1.02453 0.98812 0.91526 1.20054 1.01298 0.90324 0.96603 1.21679 1.00956 0.98334 0.94974 1.21618 1.01122 0.93663 0.99100 1.20101 1.01777 0.99239 0.86524 0.92981 0.91775 0.92870 0.91998 0.93807 0.94943 0.93803 0.98514 0.93901 0.76282 0.88879 0.89853 0.91384 0.90799 0.90665 0.91362 0.89420 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.48 37.16 0.35 -1.95 16 2 C 0.12 2.10 2.88 -67.92 -0.20 1.91 16 3 H 0.09 1.94 7.58 -51.93 -0.39 1.55 16 4 C 0.14 2.69 5.33 -4.04 -0.02 2.67 16 5 N -0.60 -14.26 2.78 -181.12 -0.50 -14.77 16 6 C 0.16 3.75 7.60 59.85 0.45 4.21 16 7 C -0.26 -6.91 9.66 -15.06 -0.15 -7.06 16 8 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -26.19 10.66 55.49 0.59 -25.60 16 11 Si 0.90 22.02 29.57 -169.99 -5.03 16.99 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 15 N -0.68 -12.59 4.42 -54.85 -0.24 -12.83 16 16 C 0.61 11.84 7.78 -12.48 -0.10 11.74 16 17 O -0.52 -11.14 15.60 5.29 0.08 -11.06 16 18 C -0.06 -1.08 7.28 -36.87 -0.27 -1.35 16 19 O 0.10 1.82 11.10 13.84 0.15 1.97 16 20 N -0.34 -5.77 12.03 33.15 0.40 -5.37 16 21 C 0.01 0.19 7.21 -82.51 -0.60 -0.40 16 22 C -0.13 -2.13 6.03 -104.70 -0.63 -2.76 16 23 C -0.05 -0.61 5.59 -27.86 -0.16 -0.76 16 24 C -0.12 -1.24 5.87 -26.43 -0.16 -1.39 16 25 C -0.12 -1.03 5.84 -26.46 -0.15 -1.18 16 26 C -0.04 -0.41 6.32 -27.64 -0.17 -0.58 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 31 H 0.04 0.73 7.86 -51.94 -0.41 0.32 16 32 H 0.03 0.82 6.90 -51.93 -0.36 0.47 16 33 H 0.04 1.14 7.30 -51.93 -0.38 0.76 16 34 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.40 7.12 6.99 -40.82 -0.29 6.83 16 37 H 0.09 1.41 7.77 -51.93 -0.40 1.01 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.59 8.10 -51.92 -0.42 0.17 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -31.45 357.25 -7.86 -39.31 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.82 Total: 2.81 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.88 Total: 3.16 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.24 Total: -58.58 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.24 Total: -9.08 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.45 -7.86 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754319378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.247 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds