Wall clock time and date at job start Tue Mar 31 2020 09:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46577 * 2 1 4 4 C 1.52995 * 109.47366 * 119.99823 * 2 1 3 5 5 N 1.46499 * 109.47434 * 175.00314 * 4 2 1 6 6 C 1.46502 * 119.99525 * 270.00375 * 5 4 2 7 7 C 1.36933 * 119.99909 * 89.99825 * 5 4 2 8 8 H 1.07994 * 120.00063 * 339.79886 * 7 5 4 9 9 C 1.38811 * 119.99425 * 160.07321 * 7 5 4 10 10 N 1.31617 * 120.00437 * 344.54593 * 9 7 5 11 11 Si 1.86807 * 119.99676 * 164.54405 * 9 7 5 12 12 H 1.48497 * 109.46997 * 59.99890 * 11 9 7 13 13 H 1.48498 * 109.46927 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46897 * 299.99828 * 11 9 7 15 15 N 1.46497 * 109.46990 * 240.00053 * 2 1 3 16 16 C 1.34783 * 120.00106 * 84.99989 * 15 2 1 17 17 O 1.21617 * 119.99614 * 0.02562 * 16 15 2 18 18 C 1.47418 * 120.00250 * 179.97438 * 16 15 2 19 19 C 1.36088 * 126.45263 * 179.68622 * 18 16 15 20 20 O 1.34254 * 106.94923 * 179.89791 * 19 18 16 21 21 C 1.34047 * 108.23193 * 0.36949 * 20 19 18 22 22 C 1.50694 * 125.38266 * 179.72954 * 21 20 19 23 23 C 1.53779 * 113.61560 * 37.53860 * 22 21 20 24 24 C 1.53782 * 87.08179 * 220.01949 * 23 22 21 25 25 C 1.53779 * 113.61384 * 300.04013 * 22 21 20 26 26 N 1.29939 * 109.23962 * 359.76374 * 21 20 19 27 27 H 1.08999 * 109.47364 * 299.99867 * 1 2 3 28 28 H 1.09002 * 109.47590 * 59.99980 * 1 2 3 29 29 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46826 * 54.99838 * 4 2 1 31 31 H 1.08999 * 109.47019 * 295.00461 * 4 2 1 32 32 H 1.09005 * 109.46940 * 264.78111 * 6 5 4 33 33 H 1.08999 * 109.47370 * 24.78135 * 6 5 4 34 34 H 1.09004 * 109.47133 * 144.78552 * 6 5 4 35 35 H 0.97003 * 120.00143 * 179.97438 * 10 9 7 36 36 H 0.96997 * 120.00133 * 264.99099 * 15 2 1 37 37 H 1.07999 * 126.52160 * 0.04256 * 19 18 16 38 38 H 1.09001 * 112.85240 * 168.84665 * 22 21 20 39 39 H 1.09006 * 113.60993 * 334.56793 * 23 22 21 40 40 H 1.08997 * 113.61592 * 105.46785 * 23 22 21 41 41 H 1.08997 * 113.61281 * 270.87946 * 24 23 22 42 42 H 1.09009 * 113.68673 * 139.99035 * 24 23 22 43 43 H 1.09001 * 113.61864 * 254.53042 * 25 22 21 44 44 H 1.09002 * 113.61728 * 25.42969 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1906 6 6 4.1258 -1.9918 0.5612 7 6 4.2798 0.1650 1.7240 8 1 3.8654 1.1487 1.8880 9 6 5.6045 -0.0931 2.0486 10 7 6.0308 -1.3352 2.1360 11 14 6.7824 1.3228 2.3612 12 1 6.2862 2.1373 3.4994 13 1 8.1278 0.7848 2.6862 14 1 6.8696 2.1717 1.1459 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1619 -2.4116 18 6 2.6389 -0.7130 -3.5607 19 6 2.8129 -0.1671 -4.7951 20 8 3.2765 -1.1425 -5.5926 21 6 3.3775 -2.2650 -4.8670 22 6 3.8540 -3.5981 -5.3835 23 6 5.0030 -3.4899 -6.3998 24 6 4.3101 -4.6163 -7.1846 25 6 2.9962 -4.1563 -6.5312 26 7 2.9989 -2.0223 -3.6479 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6054 -1.7197 1.2951 31 1 1.7516 -0.1583 2.1369 32 1 4.3667 -2.7315 1.3247 33 1 3.4369 -2.4277 -0.1624 34 1 5.0395 -1.6835 0.0529 35 1 6.9566 -1.5155 2.3625 36 1 2.2491 -1.6317 -1.1526 37 1 2.6176 0.8566 -5.0786 38 1 4.0401 -4.3187 -4.5871 39 1 5.0276 -2.5386 -6.9314 40 1 5.9737 -3.7740 -5.9934 41 1 4.6222 -5.6157 -6.8814 42 1 4.3331 -4.4754 -8.2653 43 1 2.3467 -4.9786 -6.2309 44 1 2.4721 -3.3873 -7.0987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:04 Heat of formation + Delta-G solvation = 29.224373 kcal Electronic energy + Delta-G solvation = -25681.432925 eV Core-core repulsion = 22023.154787 eV Total energy + Delta-G solvation = -3658.278138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.43068 -39.28208 -38.85016 -36.39088 -34.81318 -34.03437 -31.33213 -30.70860 -30.02182 -26.34324 -26.13506 -26.01027 -25.60376 -24.26395 -21.94553 -21.57762 -20.66485 -20.03193 -19.39135 -17.97018 -16.79187 -16.75192 -16.59393 -15.86381 -15.57721 -15.27940 -14.97990 -14.35999 -13.90648 -13.64136 -13.57014 -13.20665 -13.07661 -12.88182 -12.81227 -12.73757 -12.13157 -11.97248 -11.44095 -11.33868 -11.27654 -11.23635 -10.85344 -10.80705 -10.76881 -10.75036 -10.63236 -10.55606 -10.12927 -10.01021 -9.81221 -9.71331 -8.97928 -8.60076 -8.39687 -6.73025 -5.68377 -3.11836 1.17816 2.08243 2.52309 3.42704 3.46315 3.47671 3.50848 3.65938 3.85955 4.18175 4.27282 4.48718 4.54368 4.58396 4.87775 5.02348 5.28381 5.34515 5.35569 5.36948 5.50833 5.55158 5.57393 5.59376 5.63533 5.66287 5.74093 5.81848 5.97736 6.04670 6.09149 6.13228 6.22396 6.46881 6.55409 6.73412 6.81822 7.06979 7.41868 7.51181 7.73568 7.85269 8.04666 8.41675 8.62393 9.27050 9.90715 10.37831 11.36488 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.003995 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.099865 B = 7006.471775 C = 7997.526628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.169 3.831 7 C -0.253 4.253 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.908 5.908 11 Si 0.902 3.098 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.285 1.285 15 N -0.682 5.682 16 C 0.597 3.403 17 O -0.550 6.550 18 C -0.059 4.059 19 C 0.000 4.000 20 O -0.197 6.197 21 C 0.203 3.797 22 C -0.019 4.019 23 C -0.133 4.133 24 C -0.139 4.139 25 C -0.130 4.130 26 N -0.453 5.453 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.029 0.971 33 H -0.004 1.004 34 H 0.041 0.959 35 H 0.252 0.748 36 H 0.406 0.594 37 H 0.229 0.771 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.201 -6.419 -17.930 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.007 3.993 3 H 0.104 0.896 4 C 0.015 3.985 5 N -0.321 5.321 6 C 0.024 3.976 7 C -0.383 4.383 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.553 5.553 11 Si 0.732 3.268 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.212 1.212 15 N -0.332 5.332 16 C 0.382 3.618 17 O -0.428 6.428 18 C -0.180 4.180 19 C -0.073 4.073 20 O -0.084 6.084 21 C -0.006 4.006 22 C -0.038 4.038 23 C -0.171 4.171 24 C -0.176 4.176 25 C -0.168 4.168 26 N -0.182 5.182 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.014 0.986 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.243 0.757 37 H 0.245 0.755 38 H 0.152 0.848 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.219 -6.123 -17.377 19.788 hybrid contribution 0.908 0.981 -0.231 1.357 sum -6.311 -5.142 -17.608 19.399 Atomic orbital electron populations 1.22125 0.96345 1.01410 1.01826 1.22022 0.92281 0.98991 0.86025 0.89615 1.21046 0.85930 0.97604 0.93955 1.43845 0.99054 1.22847 1.66318 1.20797 0.94282 0.88809 0.93667 1.19142 0.92910 0.90387 1.35858 0.91426 1.24907 0.98420 0.96045 1.00188 1.70078 1.15739 1.17022 1.52441 0.86376 0.80420 0.81918 0.78121 1.20906 1.21679 1.21201 1.45871 1.64248 1.14483 1.08572 1.16734 0.77665 0.85523 0.81871 1.90773 1.52286 1.14813 1.84977 1.21991 1.08809 0.90900 0.96277 1.25222 0.99015 0.94113 0.88975 1.84302 1.64065 1.18654 1.41344 1.26029 1.00119 0.89247 0.85162 1.21293 0.97835 0.86938 0.97716 1.23023 0.97569 1.00128 0.96413 1.22818 0.95814 0.98837 1.00177 1.23018 0.97012 1.01097 0.95692 1.70806 1.14573 1.14389 1.18440 0.91767 0.92898 0.92960 0.94030 0.91749 0.95273 0.98595 0.94039 0.93809 0.75653 0.75472 0.84825 0.89266 0.90144 0.89441 0.90715 0.90232 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 37.16 0.35 -2.04 16 2 C 0.11 2.14 2.88 -67.94 -0.20 1.94 16 3 H 0.09 1.85 7.58 -51.93 -0.39 1.45 16 4 C 0.14 2.90 5.29 -4.04 -0.02 2.88 16 5 N -0.60 -15.07 2.78 -181.12 -0.50 -15.57 16 6 C 0.17 4.20 8.52 59.85 0.51 4.71 16 7 C -0.25 -7.11 9.67 -15.06 -0.15 -7.26 16 8 H 0.07 1.87 7.87 -52.49 -0.41 1.46 16 9 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 10 N -0.91 -26.86 10.67 55.49 0.59 -26.27 16 11 Si 0.90 22.58 29.58 -169.99 -5.03 17.55 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 N -0.68 -12.88 4.52 -54.89 -0.25 -13.13 16 16 C 0.60 11.52 7.78 -12.52 -0.10 11.42 16 17 O -0.55 -11.65 16.55 5.26 0.09 -11.57 16 18 C -0.06 -1.00 6.99 -83.02 -0.58 -1.58 16 19 C 0.00 0.00 11.95 29.96 0.36 0.36 16 20 O -0.20 -2.52 10.39 6.53 0.07 -2.45 16 21 C 0.20 2.67 7.33 -13.08 -0.10 2.57 16 22 C -0.02 -0.17 4.29 -90.96 -0.39 -0.56 16 23 C -0.13 -1.02 7.62 -25.92 -0.20 -1.22 16 24 C -0.14 -0.82 8.08 -25.92 -0.21 -1.03 16 25 C -0.13 -0.93 7.63 -25.92 -0.20 -1.12 16 26 N -0.45 -7.28 11.06 -7.66 -0.08 -7.37 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 32 H 0.03 0.78 7.40 -51.93 -0.38 0.40 16 33 H 0.00 -0.09 5.76 -51.93 -0.30 -0.39 16 34 H 0.04 1.14 7.20 -51.93 -0.37 0.76 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.41 7.57 5.93 -40.82 -0.24 7.33 16 37 H 0.23 2.42 8.06 -52.49 -0.42 1.99 16 38 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 0.72 7.82 -51.93 -0.41 0.31 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -33.34 364.73 -7.33 -40.67 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.71 Total: 3.58 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -1.00 Total: 9.05 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.24 Total: -62.34 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.15 Total: -14.02 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.34 -7.33 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.899 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds