Wall clock time and date at job start Tue Mar 31 2020 09:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46758 * 2 1 4 4 C 1.53000 * 109.47293 * 240.00045 * 2 1 3 5 5 N 1.46497 * 109.47014 * 185.00160 * 4 2 1 6 6 C 1.46503 * 120.00031 * 269.99587 * 5 4 2 7 7 C 1.36939 * 120.00125 * 90.00038 * 5 4 2 8 8 H 1.08005 * 119.99853 * 22.34113 * 7 5 4 9 9 C 1.38815 * 120.00053 * 202.34147 * 7 5 4 10 10 N 1.31616 * 119.99696 * 11.35537 * 9 7 5 11 11 Si 1.86791 * 119.99968 * 191.35266 * 9 7 5 12 12 H 1.48506 * 109.47009 * 90.00158 * 11 9 7 13 13 H 1.48500 * 109.47047 * 209.99881 * 11 9 7 14 14 H 1.48494 * 109.47341 * 330.00088 * 11 9 7 15 15 N 1.46504 * 109.46826 * 119.99757 * 2 1 3 16 16 C 1.34770 * 120.00143 * 275.00047 * 15 2 1 17 17 O 1.21620 * 119.99935 * 0.02562 * 16 15 2 18 18 C 1.47421 * 120.00271 * 180.02562 * 16 15 2 19 19 C 1.36077 * 126.45135 * 180.02562 * 18 16 15 20 20 O 1.34259 * 106.95160 * 179.70299 * 19 18 16 21 21 C 1.34053 * 108.22554 * 0.42308 * 20 19 18 22 22 C 1.50696 * 125.37902 * 179.82723 * 21 20 19 23 23 C 1.53775 * 113.61666 * 322.20282 * 22 21 20 24 24 C 1.53771 * 87.08428 * 89.11479 * 23 22 21 25 25 C 1.53783 * 87.08341 * 25.43163 * 24 23 22 26 26 N 1.29938 * 109.23709 * 359.56675 * 21 20 19 27 27 H 1.08991 * 109.47608 * 300.00240 * 1 2 3 28 28 H 1.09004 * 109.47134 * 60.00262 * 1 2 3 29 29 H 1.09005 * 109.47129 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46793 * 305.00248 * 4 2 1 31 31 H 1.08995 * 109.47505 * 65.00001 * 4 2 1 32 32 H 1.08998 * 109.46883 * 94.22621 * 6 5 4 33 33 H 1.08996 * 109.47462 * 214.22494 * 6 5 4 34 34 H 1.09003 * 109.46597 * 334.23166 * 6 5 4 35 35 H 0.97006 * 120.00350 * 180.02562 * 10 9 7 36 36 H 0.97006 * 119.99587 * 95.00422 * 15 2 1 37 37 H 1.08002 * 126.52774 * 359.96816 * 19 18 16 38 38 H 1.09001 * 112.90857 * 190.94158 * 22 21 20 39 39 H 1.09004 * 113.61240 * 203.66389 * 23 22 21 40 40 H 1.09002 * 113.61414 * 334.56131 * 23 22 21 41 41 H 1.09000 * 113.61392 * 270.88096 * 24 23 22 42 42 H 1.09003 * 113.69416 * 139.99105 * 24 23 22 43 43 H 1.08999 * 113.61296 * 220.01801 * 25 24 23 44 44 H 1.09001 * 113.61298 * 89.11741 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0850 -1.9159 -0.6022 8 1 3.5338 -2.8400 -0.5086 9 6 5.3863 -1.8325 -0.1261 10 7 5.9794 -0.6612 -0.0336 11 14 6.2955 -3.3827 0.3833 12 1 7.0230 -3.9369 -0.7867 13 1 7.2648 -3.0568 1.4600 14 1 5.3214 -4.3868 0.8814 15 7 2.0183 -0.6906 1.1963 16 6 2.1470 -0.0183 2.3572 17 8 1.8573 1.1617 2.4118 18 6 2.6388 -0.7130 3.5608 19 6 2.8179 -0.1657 4.7937 20 8 3.2710 -1.1438 5.5941 21 6 3.3772 -2.2651 4.8670 22 6 3.8543 -3.5980 5.3835 23 6 5.0031 -3.4894 6.3999 24 6 3.9240 -3.3929 7.4911 25 6 2.9966 -4.1567 6.5312 26 7 2.9984 -2.0224 3.6480 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6054 -1.7198 -1.2951 31 1 1.7518 -0.1584 -2.1370 32 1 4.6023 0.9456 -0.9801 33 1 5.2405 -0.2027 -2.1810 34 1 3.7810 0.7484 -2.5470 35 1 6.8889 -0.6030 0.2988 36 1 2.2490 -1.6318 1.1527 37 1 2.6274 0.8592 5.0760 38 1 4.0418 -4.3189 4.5878 39 1 5.6130 -4.3904 6.4674 40 1 5.5974 -2.5820 6.2919 41 1 3.5980 -2.3727 7.6937 42 1 4.1667 -3.9475 8.3975 43 1 1.9709 -3.7879 6.5293 44 1 3.0578 -5.2400 6.6346 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:07 Heat of formation + Delta-G solvation = 28.863256 kcal Electronic energy + Delta-G solvation = -26357.492378 eV Core-core repulsion = 22699.198581 eV Total energy + Delta-G solvation = -3658.293797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.22351 -39.05693 -38.65530 -36.25430 -34.57739 -33.91060 -31.27747 -30.42999 -29.71240 -26.13404 -26.07638 -25.85801 -25.54631 -24.05383 -22.10908 -21.60859 -20.52114 -19.64901 -19.13288 -17.51458 -16.70009 -16.56844 -16.32408 -15.59355 -15.47174 -15.21322 -14.80319 -14.22236 -13.72098 -13.61754 -13.41153 -13.16743 -12.97462 -12.78185 -12.73439 -12.55693 -12.15286 -11.86829 -11.36617 -11.24282 -11.03085 -10.98908 -10.81579 -10.65024 -10.60355 -10.58182 -10.48393 -10.34938 -10.21043 -9.98463 -9.76801 -9.49855 -8.75609 -8.50260 -8.20280 -6.72368 -5.67713 -3.13385 1.40684 2.34031 2.73443 3.40049 3.46022 3.47416 3.67566 3.92556 4.03639 4.38359 4.44323 4.53845 4.68626 4.85290 5.10499 5.28303 5.40921 5.45294 5.47556 5.57034 5.63288 5.68913 5.70823 5.75071 5.78894 5.82981 5.91817 5.98169 6.02384 6.16198 6.20747 6.29067 6.35567 6.50218 6.55495 6.78616 6.92190 7.29420 7.42939 7.76202 7.77893 7.84955 8.37015 8.42944 8.92409 9.27100 9.90655 10.39700 11.36869 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.005700 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.329745 B = 4911.148476 C = 6426.350617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.165 3.835 7 C -0.253 4.253 8 H 0.067 0.933 9 C 0.010 3.990 10 N -0.901 5.901 11 Si 0.897 3.103 12 H -0.290 1.290 13 H -0.293 1.293 14 H -0.276 1.276 15 N -0.665 5.665 16 C 0.600 3.400 17 O -0.561 6.561 18 C -0.049 4.049 19 C -0.007 4.007 20 O -0.198 6.198 21 C 0.207 3.793 22 C -0.023 4.023 23 C -0.133 4.133 24 C -0.143 4.143 25 C -0.129 4.129 26 N -0.440 5.440 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.044 0.956 34 H -0.005 1.005 35 H 0.250 0.750 36 H 0.413 0.587 37 H 0.227 0.773 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 -4.572 11.558 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.382 4.382 8 H 0.085 0.915 9 C -0.188 4.188 10 N -0.546 5.546 11 Si 0.728 3.272 12 H -0.218 1.218 13 H -0.220 1.220 14 H -0.201 1.201 15 N -0.313 5.313 16 C 0.385 3.615 17 O -0.442 6.442 18 C -0.170 4.170 19 C -0.080 4.080 20 O -0.084 6.084 21 C -0.002 4.002 22 C -0.042 4.042 23 C -0.171 4.171 24 C -0.181 4.181 25 C -0.167 4.167 26 N -0.169 5.169 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.014 0.986 35 H 0.060 0.940 36 H 0.250 0.750 37 H 0.243 0.757 38 H 0.139 0.861 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.880 -4.167 11.098 13.706 hybrid contribution 0.889 -0.515 0.797 1.301 sum -5.991 -4.682 11.895 14.118 Atomic orbital electron populations 1.22158 0.96746 1.01356 1.01574 1.21921 0.91913 0.98444 0.86924 0.90403 1.21194 0.86072 0.97931 0.93453 1.43914 0.98858 1.22681 1.66618 1.20791 0.92964 0.90457 0.93787 1.19065 0.97078 0.89376 1.32728 0.91549 1.24950 0.98690 0.96110 0.99095 1.70078 1.13220 1.21601 1.49705 0.86346 0.79845 0.83249 0.77783 1.21769 1.21990 1.20111 1.45558 1.63079 1.14863 1.07792 1.16664 0.77501 0.85360 0.81989 1.90735 1.53213 1.14965 1.85260 1.21956 1.08144 0.90675 0.96176 1.25173 0.99743 0.93978 0.89146 1.84313 1.64489 1.18576 1.41030 1.25481 1.00816 0.88687 0.85254 1.20600 0.97825 0.87370 0.98388 1.22980 0.96044 1.03460 0.94592 1.22968 0.96512 1.01274 0.97320 1.22976 0.98802 1.00722 0.94185 1.70823 1.13698 1.14602 1.17762 0.92951 0.92123 0.92943 0.93289 0.92845 0.95478 0.93690 0.98602 0.93974 0.74953 0.75656 0.86118 0.88568 0.90686 0.89652 0.90991 0.90921 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.48 37.16 0.35 -2.17 16 2 C 0.12 2.28 2.88 -67.93 -0.20 2.08 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.33 16 4 C 0.14 2.84 5.36 -4.04 -0.02 2.82 16 5 N -0.60 -14.76 2.82 -181.12 -0.51 -15.27 16 6 C 0.16 4.12 9.01 59.85 0.54 4.66 16 7 C -0.25 -6.72 8.02 -15.06 -0.12 -6.84 16 8 H 0.07 1.73 7.84 -52.48 -0.41 1.32 16 9 C 0.01 0.29 5.13 -17.43 -0.09 0.20 16 10 N -0.90 -26.48 10.58 55.49 0.59 -25.89 16 11 Si 0.90 22.04 29.57 -169.99 -5.03 17.01 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 N -0.66 -14.11 4.48 -54.88 -0.25 -14.35 16 16 C 0.60 13.05 7.78 -12.52 -0.10 12.96 16 17 O -0.56 -13.02 16.55 5.26 0.09 -12.93 16 18 C -0.05 -0.96 6.99 -83.03 -0.58 -1.54 16 19 C -0.01 -0.11 11.94 29.96 0.36 0.24 16 20 O -0.20 -3.00 9.52 6.50 0.06 -2.94 16 21 C 0.21 3.32 7.19 -13.08 -0.09 3.23 16 22 C -0.02 -0.28 4.49 -90.96 -0.41 -0.69 16 23 C -0.13 -1.36 7.62 -25.93 -0.20 -1.56 16 24 C -0.14 -1.28 7.71 -25.92 -0.20 -1.48 16 25 C -0.13 -1.19 7.66 -25.92 -0.20 -1.39 16 26 N -0.44 -8.52 11.06 -7.66 -0.08 -8.61 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.93 8.03 -51.93 -0.42 0.52 16 31 H 0.05 0.96 7.86 -51.93 -0.41 0.55 16 32 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 33 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16 34 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 35 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.41 9.08 7.13 -40.82 -0.29 8.79 16 37 H 0.23 2.91 8.06 -52.49 -0.42 2.48 16 38 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.08 0.84 7.24 -51.93 -0.38 0.46 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -32.60 364.85 -7.41 -40.01 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.82 Total: 6.96 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -0.95 Total: 10.52 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.25 Total: -64.13 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.15 Total: -15.87 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.60 -7.41 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.871 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds