Wall clock time and date at job start Tue Mar 31 2020 09:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47279 * 2 1 4 4 N 1.28513 * 124.44474 * 89.97600 * 3 2 1 5 5 C 1.31125 * 109.05897 * 180.02562 * 4 3 2 6 6 C 1.50707 * 127.11270 * 180.02562 * 5 4 3 7 7 C 1.40924 * 105.77759 * 359.97438 * 5 4 3 8 8 C 1.47800 * 127.23612 * 180.02562 * 7 5 4 9 9 O 1.21560 * 120.00267 * 359.97438 * 8 7 5 10 10 N 1.34782 * 119.99886 * 180.02562 * 8 7 5 11 11 C 1.46497 * 119.99822 * 179.97438 * 10 8 7 12 12 C 1.52993 * 110.89183 * 297.57543 * 11 10 8 13 13 C 1.55157 * 111.03555 * 173.66724 * 11 10 8 14 14 C 1.54334 * 103.02095 * 277.21854 * 13 11 10 15 15 N 1.47014 * 107.26782 * 338.14225 * 14 13 11 16 16 C 1.36945 * 125.64902 * 178.84833 * 15 14 13 17 17 H 1.07997 * 119.99756 * 179.68982 * 16 15 14 18 18 C 1.38805 * 119.99878 * 359.68887 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47428 * 108.70537 * 358.58102 * 15 14 13 25 25 N 1.28589 * 124.44025 * 270.31680 * 3 2 1 26 26 H 1.09000 * 109.47265 * 60.00138 * 1 2 3 27 27 H 1.09002 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47155 * 300.00338 * 1 2 3 29 29 H 1.09003 * 109.47155 * 239.99662 * 2 1 3 30 30 H 1.09001 * 109.46605 * 120.00223 * 2 1 3 31 31 H 1.09007 * 109.46781 * 269.96831 * 6 5 4 32 32 H 1.08997 * 109.46992 * 29.96755 * 6 5 4 33 33 H 1.09002 * 109.47270 * 149.96968 * 6 5 4 34 34 H 0.96991 * 119.99925 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.47666 * 182.43089 * 12 11 10 36 36 H 1.09008 * 109.47143 * 302.42655 * 12 11 10 37 37 H 1.08999 * 109.47170 * 62.42125 * 12 11 10 38 38 H 1.08998 * 110.71770 * 35.78022 * 13 11 10 39 39 H 1.09002 * 110.71853 * 158.87455 * 13 11 10 40 40 H 1.08998 * 109.99457 * 218.65928 * 14 13 11 41 41 H 1.09007 * 109.77698 * 97.49747 * 14 13 11 42 42 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 43 43 H 1.09003 * 110.36579 * 143.19056 * 24 15 14 44 44 H 1.08993 * 110.36917 * 265.41008 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2603 2.0666 1.0598 5 6 2.6813 3.2587 0.7119 6 6 3.0798 4.3860 1.6294 7 6 2.6853 3.2675 -0.6973 8 6 3.0801 4.3825 -1.5836 9 8 3.4519 5.4365 -1.1056 10 7 3.0268 4.2310 -2.9218 11 6 3.4175 5.3363 -3.8002 12 6 2.5005 6.5442 -3.5981 13 6 3.4293 4.8895 -5.2860 14 6 4.8093 4.2148 -5.4352 15 7 5.6684 4.7363 -4.3623 16 6 6.9678 4.3708 -4.1314 17 1 7.5178 4.8178 -3.3165 18 6 7.5779 3.4259 -4.9448 19 7 6.9078 2.8815 -5.9382 20 14 9.3507 2.9278 -4.6303 21 1 9.7637 1.9104 -5.6300 22 1 10.2278 4.1205 -4.7457 23 1 9.4695 2.3562 -3.2649 24 6 4.9015 5.7228 -3.5799 25 7 2.2553 2.0688 -1.0605 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 2.2070 5.0004 1.8504 32 1 3.4795 3.9756 2.5567 33 1 3.8411 4.9972 1.1446 34 1 2.7290 3.3903 -3.3031 35 1 2.7840 7.3358 -4.2918 36 1 1.4672 6.2511 -3.7840 37 1 2.5968 6.9062 -2.5745 38 1 2.6266 4.1784 -5.4812 39 1 3.3488 5.7513 -5.9485 40 1 5.2401 4.4581 -6.4065 41 1 4.7046 3.1344 -5.3341 42 1 7.3343 2.2214 -6.5068 43 1 5.1590 5.6518 -2.5231 44 1 5.0916 6.7305 -3.9492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046873607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:58 Heat of formation + Delta-G solvation = 97.102319 kcal Electronic energy + Delta-G solvation = -26278.744411 eV Core-core repulsion = 22655.702433 eV Total energy + Delta-G solvation = -3623.041978 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.60203 -39.66355 -37.22180 -35.16986 -33.97221 -33.01904 -31.83509 -31.26769 -29.90793 -28.63320 -27.97001 -25.65945 -25.19848 -23.60663 -22.73337 -21.02372 -20.83869 -20.09346 -18.88495 -17.74800 -17.10052 -16.67124 -16.38729 -15.45845 -14.84740 -14.58235 -14.51531 -14.06723 -13.91023 -13.71107 -13.41524 -13.24536 -12.87845 -12.76575 -12.58817 -12.41779 -12.02450 -11.87406 -11.76256 -11.75620 -11.61247 -11.39906 -10.93579 -10.86336 -10.83063 -10.39742 -10.32322 -10.20382 -10.07082 -9.95098 -9.60142 -9.40068 -9.15569 -8.59107 -8.47760 -6.74062 -5.65218 -2.96791 1.45169 1.99580 2.10380 3.39912 3.44768 3.48407 3.49966 3.60867 3.93949 4.50041 4.55284 4.56062 4.78631 4.80827 4.99382 5.15345 5.26101 5.31266 5.42566 5.51597 5.54825 5.65279 5.66480 5.72054 5.77788 5.82192 5.99825 6.04747 6.16872 6.20564 6.33942 6.39276 6.45272 6.57768 6.58998 6.72565 6.87714 7.16839 7.60032 7.62927 7.84928 7.89946 8.22406 8.32202 8.56375 9.29283 9.89533 10.55651 11.46855 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.012595 B = 0.004521 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.646917 B = 6191.774314 C = 6895.978846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.134 3.866 3 N -0.145 5.145 4 N -0.297 5.297 5 C 0.059 3.941 6 C -0.067 4.067 7 C -0.039 4.039 8 C 0.612 3.388 9 O -0.527 6.527 10 N -0.685 5.685 11 C 0.156 3.844 12 C -0.149 4.149 13 C -0.146 4.146 14 C 0.178 3.822 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.925 5.925 20 Si 0.910 3.090 21 H -0.291 1.291 22 H -0.285 1.285 23 H -0.287 1.287 24 C 0.131 3.869 25 N -0.248 5.248 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.403 0.597 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.251 0.749 43 H 0.057 0.943 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.217 -2.754 10.241 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.047 5.047 4 N -0.138 5.138 5 C -0.105 4.105 6 C -0.125 4.125 7 C -0.202 4.202 8 C 0.395 3.605 9 O -0.402 6.402 10 N -0.334 5.334 11 C 0.069 3.931 12 C -0.207 4.207 13 C -0.185 4.185 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.573 5.573 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.212 1.212 23 H -0.214 1.214 24 C 0.004 3.996 25 N -0.095 5.095 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.238 0.762 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.227 -3.436 10.440 18.779 hybrid contribution 1.102 -0.229 -0.183 1.140 sum -14.125 -3.665 10.257 17.837 Atomic orbital electron populations 1.22184 0.93064 1.03885 1.03707 1.22053 0.96020 0.74323 1.06124 1.48048 1.44220 1.13228 0.99226 1.73879 1.19187 1.05320 1.15446 1.23250 1.00693 0.93805 0.92770 1.20216 1.02767 0.92815 0.96734 1.23089 1.08919 0.93802 0.94427 1.16505 0.77633 0.84786 0.81582 1.90722 1.47533 1.26620 1.75325 1.45645 1.65786 1.17256 1.04716 1.21545 0.95806 0.86025 0.89700 1.21995 0.98266 0.97115 1.03373 1.23230 1.00894 1.00989 0.93364 1.21148 0.84759 0.96487 0.92307 1.44432 1.10172 1.45939 1.32372 1.19019 0.86325 1.18164 1.11387 0.90636 1.24747 0.98302 0.99422 0.98049 1.69942 1.35572 1.31821 1.19991 0.86225 0.84649 0.77974 0.77112 1.21666 1.21172 1.21360 1.21899 0.88104 0.92671 0.96896 1.74361 1.15037 1.04374 1.15760 0.91291 0.89537 0.91460 0.87040 0.87234 0.90324 0.90936 0.88371 0.76177 0.91708 0.93120 0.90924 0.91762 0.90786 0.93855 0.93643 0.93887 0.92515 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.24 37.16 0.38 -0.74 16 2 C 0.13 1.12 7.24 -4.04 -0.03 1.09 16 3 N -0.14 -1.96 3.94 -10.61 -0.04 -2.00 16 4 N -0.30 -4.33 12.00 33.92 0.41 -3.92 16 5 C 0.06 0.90 7.39 -81.88 -0.61 0.30 16 6 C -0.07 -0.84 10.00 36.01 0.36 -0.48 16 7 C -0.04 -0.66 7.21 -82.68 -0.60 -1.26 16 8 C 0.61 11.19 7.22 -12.35 -0.09 11.10 16 9 O -0.53 -10.24 12.00 5.31 0.06 -10.18 16 10 N -0.68 -12.21 5.17 -46.57 -0.24 -12.45 16 11 C 0.16 2.83 0.82 -129.67 -0.11 2.73 16 12 C -0.15 -2.28 8.58 37.15 0.32 -1.96 16 13 C -0.15 -2.66 5.99 -24.89 -0.15 -2.81 16 14 C 0.18 4.29 5.37 -3.06 -0.02 4.27 16 15 N -0.60 -15.77 3.39 -170.06 -0.58 -16.35 16 16 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.43 10.31 55.49 0.57 -26.86 16 20 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 24 C 0.13 2.92 6.10 -2.52 -0.02 2.90 16 25 N -0.25 -3.89 11.84 33.42 0.40 -3.50 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.37 6.77 -51.93 -0.35 1.02 16 34 H 0.40 6.87 8.26 -40.82 -0.34 6.53 16 35 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.07 1.19 6.53 -51.93 -0.34 0.85 16 38 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 39 H 0.07 1.24 8.01 -51.93 -0.42 0.82 16 40 H 0.04 1.16 7.52 -51.93 -0.39 0.77 16 41 H 0.05 1.21 7.37 -51.93 -0.38 0.83 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 43 H 0.06 1.35 6.31 -51.93 -0.33 1.03 16 44 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -33.94 357.72 -6.58 -40.52 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.73 Total: 3.36 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.80 Total: 8.25 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: 0.52 Total: -65.09 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.06 Total: -10.18 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.94 -6.58 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046873607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.625 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds