Wall clock time and date at job start Tue Mar 31 2020 10:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47310 * 2 1 4 4 C 1.38291 * 119.96958 * 270.02111 * 3 2 1 5 5 C 1.38246 * 120.10854 * 179.97438 * 4 3 2 6 6 C 1.38163 * 120.05704 * 359.97438 * 5 4 3 7 7 C 1.38715 * 119.94155 * 0.04309 * 6 5 4 8 8 O 1.35905 * 120.05225 * 180.02562 * 7 6 5 9 9 C 1.42899 * 117.00032 * 359.94948 * 8 7 6 10 10 C 1.52998 * 109.47067 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47014 * 55.00304 * 10 9 8 12 12 O 1.42904 * 109.47326 * 295.00287 * 10 9 8 13 13 C 1.53000 * 109.47114 * 175.00219 * 10 9 8 14 14 N 1.46897 * 109.47343 * 184.99783 * 13 10 9 15 15 C 1.46899 * 111.00217 * 174.67590 * 14 13 10 16 16 H 1.08993 * 109.47476 * 325.91996 * 15 14 13 17 17 C 1.50709 * 109.47168 * 205.91970 * 15 14 13 18 18 H 1.08000 * 120.00104 * 0.02562 * 17 15 14 19 19 C 1.37875 * 119.99873 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99967 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00021 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47242 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47386 * 119.99517 * 21 19 17 24 24 H 1.48493 * 109.47329 * 239.99570 * 21 19 17 25 25 C 1.52997 * 109.47088 * 85.92028 * 15 14 13 26 26 C 1.53004 * 109.46958 * 65.15920 * 25 15 14 27 27 C 1.38122 * 119.97086 * 90.00171 * 3 2 1 28 28 H 1.08992 * 109.47674 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46866 * 300.00695 * 1 2 3 30 30 H 1.09003 * 109.47308 * 59.99712 * 1 2 3 31 31 H 1.08997 * 109.46799 * 240.00003 * 2 1 3 32 32 H 1.08997 * 109.46895 * 120.00157 * 2 1 3 33 33 H 1.07997 * 119.94620 * 359.95395 * 4 3 2 34 34 H 1.08001 * 119.97190 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.02758 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47533 * 300.00377 * 9 8 7 37 37 H 1.08997 * 109.46955 * 60.00240 * 9 8 7 38 38 H 0.96707 * 113.99483 * 300.00210 * 12 10 9 39 39 H 1.09001 * 109.47246 * 304.99912 * 13 10 9 40 40 H 1.09002 * 109.47539 * 65.00120 * 13 10 9 41 41 H 1.00901 * 111.00666 * 298.63882 * 14 13 10 42 42 H 0.97002 * 119.99522 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.47460 * 185.15742 * 25 15 14 44 44 H 1.08998 * 109.46954 * 305.16389 * 25 15 14 45 45 H 1.09008 * 109.46830 * 174.84692 * 26 25 15 46 46 H 1.08994 * 109.47580 * 294.84887 * 26 25 15 47 47 H 1.09000 * 109.47190 * 54.85245 * 26 25 15 48 48 H 1.08000 * 120.02856 * 359.74731 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0722 -1.1980 5 6 2.7226 3.3758 -1.2014 6 6 2.9537 4.0312 -0.0072 7 6 2.7242 3.3797 1.1958 8 8 2.9502 4.0224 2.3717 9 6 3.4251 5.3680 2.2948 10 6 3.6202 5.9215 3.7078 11 1 4.2792 5.2595 4.2695 12 8 2.3544 6.0042 4.3660 13 6 4.2454 7.3156 3.6276 14 7 4.5429 7.7976 4.9830 15 6 5.2594 9.0793 4.9405 16 1 5.9137 9.1011 4.0691 17 6 6.0842 9.2354 6.1921 18 1 6.0772 8.4599 6.9437 19 6 6.8478 10.3684 6.3776 20 7 6.8566 11.3125 5.4622 21 14 7.8707 10.5616 7.9286 22 1 7.6887 9.3682 8.7936 23 1 9.3039 10.6945 7.5630 24 1 7.4325 11.7758 8.6626 25 6 4.2497 10.2252 4.8489 26 6 3.4158 10.2738 6.1308 27 6 2.2624 2.0713 1.1965 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0822 1.5617 -2.1325 34 1 2.9018 3.8823 -2.1382 35 1 3.3137 5.0494 -0.0104 36 1 4.3761 5.3879 1.7627 37 1 2.6976 5.9800 1.7617 38 1 1.7162 6.5780 3.9203 39 1 5.1676 7.2675 3.0485 40 1 3.5479 7.9994 3.1438 41 1 3.7005 7.8723 5.5333 42 1 7.3941 12.1094 5.5926 43 1 4.7812 11.1688 4.7252 44 1 3.5930 10.0633 3.9942 45 1 2.7602 11.1443 6.1049 46 1 2.8143 9.3681 6.2076 47 1 4.0788 10.3439 6.9931 48 1 2.0786 1.5636 2.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647552897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:32 Heat of formation + Delta-G solvation = -82.269808 kcal Electronic energy + Delta-G solvation = -24781.998029 eV Core-core repulsion = 21222.425484 eV Total energy + Delta-G solvation = -3559.572545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.36583 -38.47351 -37.25826 -35.82496 -34.06181 -32.60187 -31.28846 -30.60448 -29.43209 -29.03703 -26.57964 -24.79366 -23.87669 -23.15384 -22.68959 -21.46471 -20.81201 -19.33325 -17.89640 -16.92591 -16.53049 -16.25968 -16.12540 -15.51253 -15.09094 -14.85901 -14.80212 -14.24266 -14.09440 -13.81271 -13.68452 -13.30550 -13.18547 -12.91804 -12.69119 -12.47277 -12.29397 -12.11312 -11.89523 -11.68618 -11.58490 -11.29779 -11.06845 -11.00055 -10.95860 -10.79617 -10.59463 -10.52357 -10.14378 -9.99462 -9.68235 -9.57429 -9.01375 -8.97984 -8.36457 -8.32616 -7.26682 -5.99459 -4.00658 1.11609 1.28393 3.00612 3.31107 3.39429 3.45097 3.55985 4.40271 4.45929 4.49100 4.56277 4.75159 4.75493 4.90114 4.99915 5.03146 5.08067 5.12660 5.25875 5.31593 5.32551 5.35158 5.45766 5.47161 5.59220 5.67783 5.74105 5.84439 5.90342 6.05315 6.14379 6.24376 6.27496 6.32760 6.36568 6.39682 6.54670 6.59999 6.86520 7.22757 7.24443 7.31737 7.50058 7.66810 7.76286 7.87626 8.25023 8.52577 8.58946 9.05752 9.63190 11.07692 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.002173 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.496909 B =12880.512630 C =12937.571369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.045 4.045 4 C -0.162 4.162 5 C -0.077 4.077 6 C -0.216 4.216 7 C 0.137 3.863 8 O -0.302 6.302 9 C 0.029 3.971 10 C 0.113 3.887 11 H 0.116 0.884 12 O -0.550 6.550 13 C 0.035 3.965 14 N -0.678 5.678 15 C 0.215 3.785 16 H 0.031 0.969 17 C -0.487 4.487 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.286 1.286 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.153 4.153 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.367 0.633 39 H 0.075 0.925 40 H 0.022 0.978 41 H 0.335 0.665 42 H 0.258 0.742 43 H 0.093 0.907 44 H 0.008 0.992 45 H 0.023 0.977 46 H 0.029 0.971 47 H 0.069 0.931 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.457 -16.799 -13.758 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.046 4.046 4 C -0.180 4.180 5 C -0.095 4.095 6 C -0.235 4.235 7 C 0.091 3.909 8 O -0.215 6.215 9 C -0.047 4.047 10 C 0.054 3.946 11 H 0.134 0.866 12 O -0.354 6.354 13 C -0.096 4.096 14 N -0.310 5.310 15 C 0.107 3.893 16 H 0.049 0.951 17 C -0.526 4.526 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.722 3.278 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.185 4.185 26 C -0.188 4.188 27 C -0.171 4.171 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.214 0.786 39 H 0.093 0.907 40 H 0.040 0.960 41 H 0.154 0.846 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.027 0.973 45 H 0.042 0.958 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.516 -17.472 -13.094 24.234 hybrid contribution -0.234 1.581 -0.236 1.616 sum -10.750 -15.891 -13.330 23.361 Atomic orbital electron populations 1.21748 0.94533 1.01758 1.02396 1.20560 0.96327 0.92338 1.03030 1.19672 0.96688 0.95899 0.92292 1.20891 1.04287 0.95402 0.97442 1.20918 0.96752 0.94475 0.97376 1.21297 1.08468 1.01426 0.92325 1.19087 0.94609 0.92171 0.84987 1.86164 1.80491 1.27401 1.27492 1.23691 0.99466 0.81050 1.00525 1.22102 0.85829 0.97006 0.89704 0.86598 1.86661 1.23805 1.71062 1.53822 1.22428 0.99508 0.93166 0.94497 1.60698 1.27639 1.33469 1.09218 1.19250 0.90750 0.81470 0.97825 0.95085 1.21108 1.24609 1.03012 1.03869 0.91870 1.24924 0.96962 0.95921 0.96680 1.69890 1.41114 1.08657 1.34019 0.86501 0.79961 0.77941 0.83391 1.19692 1.21209 1.21237 1.22106 0.97283 1.05203 0.93860 1.21606 0.98677 0.97635 1.00924 1.20294 1.05409 0.92791 0.98625 0.92325 0.92351 0.92543 0.90860 0.90787 0.86179 0.85897 0.85501 0.90956 0.91891 0.78645 0.90654 0.96001 0.84597 0.93183 0.88891 0.97286 0.95776 0.95205 0.91183 0.85288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.09 -0.61 6.06 -27.88 -0.17 -0.77 16 3 C -0.05 -0.43 5.13 -104.65 -0.54 -0.97 16 4 C -0.16 -1.48 9.70 -39.56 -0.38 -1.86 16 5 C -0.08 -0.74 10.04 -39.61 -0.40 -1.13 16 6 C -0.22 -2.37 9.04 -39.43 -0.36 -2.73 16 7 C 0.14 1.71 6.69 -39.22 -0.26 1.45 16 8 O -0.30 -4.15 10.10 -24.29 -0.25 -4.40 16 9 C 0.03 0.35 4.37 37.16 0.16 0.51 16 10 C 0.11 1.63 3.49 -26.73 -0.09 1.53 16 11 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 12 O -0.55 -8.09 12.92 -40.08 -0.52 -8.61 16 13 C 0.03 0.57 5.18 -3.83 -0.02 0.55 16 14 N -0.68 -13.98 6.21 -107.95 -0.67 -14.65 16 15 C 0.21 5.19 2.33 -68.86 -0.16 5.02 16 16 H 0.03 0.83 7.70 -51.93 -0.40 0.43 16 17 C -0.49 -13.07 7.25 -34.44 -0.25 -13.32 16 18 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 19 C 0.06 1.51 5.28 -17.82 -0.09 1.41 16 20 N -0.90 -25.04 11.38 55.43 0.63 -24.41 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.14 -3.32 5.51 -26.73 -0.15 -3.47 16 26 C -0.13 -2.77 9.40 37.16 0.35 -2.42 16 27 C -0.15 -1.72 9.64 -39.44 -0.38 -2.11 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 36 H 0.07 0.81 7.66 -51.93 -0.40 0.41 16 37 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 38 H 0.37 4.12 9.05 45.56 0.41 4.53 16 39 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 40 H 0.02 0.34 7.54 -51.93 -0.39 -0.05 16 41 H 0.33 6.80 6.33 -39.29 -0.25 6.55 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.09 2.40 6.22 -51.93 -0.32 2.08 16 44 H 0.01 0.18 7.50 -51.93 -0.39 -0.21 16 45 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 46 H 0.03 0.57 6.63 -51.93 -0.34 0.22 16 47 H 0.07 1.63 6.85 -51.93 -0.36 1.28 16 48 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -29.61 385.03 -9.74 -39.35 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.35 Total: 9.55 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.37 Total: -18.89 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.04 Total: -39.07 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.76 Total: -13.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.61 -9.74 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647552897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.921 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds