Wall clock time and date at job start Tue Mar 31 2020 10:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47310 * 2 1 4 4 C 1.38291 * 119.96958 * 270.02111 * 3 2 1 5 5 C 1.38246 * 120.10854 * 179.97438 * 4 3 2 6 6 C 1.38163 * 120.05704 * 359.97438 * 5 4 3 7 7 C 1.38715 * 119.94155 * 0.04309 * 6 5 4 8 8 O 1.35905 * 120.05225 * 180.02562 * 7 6 5 9 9 C 1.42899 * 117.00032 * 359.94948 * 8 7 6 10 10 C 1.52998 * 109.47067 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47014 * 55.00304 * 10 9 8 12 12 O 1.42904 * 109.47326 * 295.00287 * 10 9 8 13 13 C 1.53000 * 109.47114 * 175.00219 * 10 9 8 14 14 N 1.46897 * 109.47343 * 184.99783 * 13 10 9 15 15 C 1.46899 * 111.00217 * 174.67590 * 14 13 10 16 16 H 1.08993 * 109.47476 * 325.91996 * 15 14 13 17 17 C 1.50709 * 109.47168 * 205.91970 * 15 14 13 18 18 H 1.08000 * 120.00104 * 0.02562 * 17 15 14 19 19 C 1.37875 * 119.99873 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99967 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00021 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47242 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47386 * 119.99517 * 21 19 17 24 24 H 1.48493 * 109.47329 * 239.99570 * 21 19 17 25 25 C 1.52997 * 109.47088 * 85.92028 * 15 14 13 26 26 C 1.53004 * 109.46958 * 65.15920 * 25 15 14 27 27 C 1.38122 * 119.97086 * 90.00171 * 3 2 1 28 28 H 1.08992 * 109.47674 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46866 * 300.00695 * 1 2 3 30 30 H 1.09003 * 109.47308 * 59.99712 * 1 2 3 31 31 H 1.08997 * 109.46799 * 240.00003 * 2 1 3 32 32 H 1.08997 * 109.46895 * 120.00157 * 2 1 3 33 33 H 1.07997 * 119.94620 * 359.95395 * 4 3 2 34 34 H 1.08001 * 119.97190 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.02758 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47533 * 300.00377 * 9 8 7 37 37 H 1.08997 * 109.46955 * 60.00240 * 9 8 7 38 38 H 0.96707 * 113.99483 * 300.00210 * 12 10 9 39 39 H 1.09001 * 109.47246 * 304.99912 * 13 10 9 40 40 H 1.09002 * 109.47539 * 65.00120 * 13 10 9 41 41 H 1.00901 * 111.00666 * 298.63882 * 14 13 10 42 42 H 0.97002 * 119.99522 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.47460 * 185.15742 * 25 15 14 44 44 H 1.08998 * 109.46954 * 305.16389 * 25 15 14 45 45 H 1.09008 * 109.46830 * 174.84692 * 26 25 15 46 46 H 1.08994 * 109.47580 * 294.84887 * 26 25 15 47 47 H 1.09000 * 109.47190 * 54.85245 * 26 25 15 48 48 H 1.08000 * 120.02856 * 359.74731 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0722 -1.1980 5 6 2.7226 3.3758 -1.2014 6 6 2.9537 4.0312 -0.0072 7 6 2.7242 3.3797 1.1958 8 8 2.9502 4.0224 2.3717 9 6 3.4251 5.3680 2.2948 10 6 3.6202 5.9215 3.7078 11 1 4.2792 5.2595 4.2695 12 8 2.3544 6.0042 4.3660 13 6 4.2454 7.3156 3.6276 14 7 4.5429 7.7976 4.9830 15 6 5.2594 9.0793 4.9405 16 1 5.9137 9.1011 4.0691 17 6 6.0842 9.2354 6.1921 18 1 6.0772 8.4599 6.9437 19 6 6.8478 10.3684 6.3776 20 7 6.8566 11.3125 5.4622 21 14 7.8707 10.5616 7.9286 22 1 7.6887 9.3682 8.7936 23 1 9.3039 10.6945 7.5630 24 1 7.4325 11.7758 8.6626 25 6 4.2497 10.2252 4.8489 26 6 3.4158 10.2738 6.1308 27 6 2.2624 2.0713 1.1965 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0822 1.5617 -2.1325 34 1 2.9018 3.8823 -2.1382 35 1 3.3137 5.0494 -0.0104 36 1 4.3761 5.3879 1.7627 37 1 2.6976 5.9800 1.7617 38 1 1.7162 6.5780 3.9203 39 1 5.1676 7.2675 3.0485 40 1 3.5479 7.9994 3.1438 41 1 3.7005 7.8723 5.5333 42 1 7.3941 12.1094 5.5926 43 1 4.7812 11.1688 4.7252 44 1 3.5930 10.0633 3.9942 45 1 2.7602 11.1443 6.1049 46 1 2.8143 9.3681 6.2076 47 1 4.0788 10.3439 6.9931 48 1 2.0786 1.5636 2.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647552897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:31 Heat of formation + Delta-G solvation = -100.869423 kcal Electronic energy + Delta-G solvation = -24782.804569 eV Core-core repulsion = 21222.425484 eV Total energy + Delta-G solvation = -3560.379085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22291 -39.51972 -38.47280 -37.33688 -34.70261 -34.39487 -32.77936 -31.72928 -30.41657 -29.96330 -28.34641 -26.10864 -25.07668 -24.55886 -23.45998 -22.65036 -21.63174 -21.15324 -18.78900 -18.25920 -17.81344 -17.59090 -16.93806 -16.83014 -16.51500 -16.30164 -15.56151 -15.51086 -15.36428 -14.87005 -14.65984 -14.43623 -14.34507 -14.12801 -14.04728 -13.80016 -13.65055 -13.14932 -12.99798 -12.85120 -12.71820 -12.64305 -12.44703 -12.38879 -12.02390 -11.91507 -11.85318 -11.80811 -11.71695 -11.54613 -11.43308 -11.16119 -10.82305 -10.43608 -9.76770 -9.14883 -8.93208 -8.06380 -6.13943 0.35773 0.49327 1.40936 1.44228 1.55310 2.06216 2.45948 2.79361 3.22575 3.40710 3.51060 3.82668 3.85752 3.96369 4.04233 4.09680 4.15028 4.27549 4.30047 4.38530 4.40037 4.51622 4.55285 4.56086 4.61032 4.65637 4.67869 4.78995 4.80281 5.04706 5.08508 5.09954 5.11310 5.15377 5.36251 5.36492 5.39509 5.42883 5.50132 5.67659 5.70960 5.75002 5.83470 5.87074 6.32111 6.44359 6.67682 6.78093 6.86554 6.99092 7.53775 8.98991 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.030020 B = 0.002173 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.496909 B =12880.512630 C =12937.571369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.047 4.047 4 C -0.163 4.163 5 C -0.081 4.081 6 C -0.227 4.227 7 C 0.112 3.888 8 O -0.324 6.324 9 C 0.036 3.964 10 C 0.126 3.874 11 H 0.095 0.905 12 O -0.564 6.564 13 C 0.038 3.962 14 N -0.687 5.687 15 C 0.221 3.779 16 H 0.001 0.999 17 C -0.499 4.499 18 H 0.049 0.951 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.950 3.050 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.281 1.281 25 C -0.138 4.138 26 C -0.123 4.123 27 C -0.171 4.171 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.383 0.617 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.338 0.662 42 H 0.259 0.741 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.042 0.958 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.535 -17.737 -15.040 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.048 4.048 4 C -0.180 4.180 5 C -0.098 4.098 6 C -0.245 4.245 7 C 0.067 3.933 8 O -0.238 6.238 9 C -0.039 4.039 10 C 0.067 3.933 11 H 0.113 0.887 12 O -0.370 6.370 13 C -0.092 4.092 14 N -0.319 5.319 15 C 0.112 3.888 16 H 0.019 0.981 17 C -0.538 4.538 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.777 3.223 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.207 1.207 25 C -0.177 4.177 26 C -0.180 4.180 27 C -0.189 4.189 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.232 0.768 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.157 0.843 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.611 -18.420 -14.386 26.098 hybrid contribution 0.056 1.799 0.091 1.802 sum -11.555 -16.621 -14.295 24.782 Atomic orbital electron populations 1.21734 0.94016 1.02591 1.01886 1.20624 0.96681 0.90956 1.03928 1.19987 0.95935 0.96977 0.91864 1.21255 1.03165 0.95388 0.98242 1.21268 0.95957 0.94784 0.97834 1.21478 1.08717 1.01974 0.92349 1.19337 0.96142 0.92778 0.85057 1.86101 1.81087 1.27935 1.28689 1.23546 1.00514 0.81011 0.98866 1.21781 0.85400 0.95267 0.90890 0.88667 1.86622 1.24108 1.71692 1.54615 1.22434 0.99941 0.94553 0.92260 1.60537 1.27921 1.31586 1.11874 1.18994 0.90857 0.83626 0.95308 0.98131 1.21319 1.25312 1.02661 1.04535 0.93237 1.25573 0.97990 0.95765 0.99173 1.70005 1.41694 1.08943 1.35346 0.85622 0.78505 0.77834 0.80359 1.19598 1.20994 1.20733 1.21948 0.97219 1.02934 0.95646 1.21494 0.98327 0.99512 0.98685 1.20474 1.06241 0.92843 0.99387 0.90845 0.93517 0.92385 0.89211 0.90667 0.83699 0.83506 0.84695 0.90156 0.90018 0.76785 0.91057 0.94456 0.84317 0.93204 0.91990 0.95237 0.93887 0.93250 0.93797 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.89 71.98 0.71 -0.92 16 2 C -0.08 -1.05 6.06 29.85 0.18 -0.87 16 3 C -0.05 -0.84 5.13 -19.88 -0.10 -0.95 16 4 C -0.16 -2.58 9.70 22.28 0.22 -2.37 16 5 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 6 C -0.23 -4.68 9.04 22.37 0.20 -4.48 16 7 C 0.11 2.75 6.69 22.51 0.15 2.90 16 8 O -0.32 -8.87 10.10 -87.84 -0.89 -9.76 16 9 C 0.04 0.85 4.37 71.98 0.31 1.16 16 10 C 0.13 3.56 3.49 30.59 0.11 3.67 16 11 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 12 O -0.56 -16.04 12.92 -144.34 -1.86 -17.90 16 13 C 0.04 1.24 5.18 86.30 0.45 1.68 16 14 N -0.69 -28.25 6.21 -495.45 -3.07 -31.33 16 15 C 0.22 10.77 2.33 44.17 0.10 10.88 16 16 H 0.00 0.04 7.70 -2.39 -0.02 0.02 16 17 C -0.50 -27.20 7.25 25.60 0.19 -27.01 16 18 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 19 C 0.01 0.72 5.28 84.65 0.45 1.17 16 20 N -0.92 -52.02 11.38 21.45 0.24 -51.78 16 21 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 C -0.14 -6.26 5.51 30.59 0.17 -6.10 16 26 C -0.12 -5.06 9.40 71.98 0.68 -4.38 16 27 C -0.17 -3.84 9.64 22.36 0.22 -3.62 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.14 2.44 6.30 -2.91 -0.02 2.43 16 36 H 0.08 1.72 7.66 -2.39 -0.02 1.70 16 37 H 0.08 1.58 7.66 -2.39 -0.02 1.56 16 38 H 0.38 7.93 9.05 -74.05 -0.67 7.26 16 39 H 0.07 2.35 7.92 -2.39 -0.02 2.33 16 40 H 0.04 1.10 7.54 -2.39 -0.02 1.08 16 41 H 0.34 13.45 6.33 -89.69 -0.57 12.88 16 42 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 43 H 0.06 3.23 6.22 -2.39 -0.01 3.21 16 44 H 0.03 1.19 7.50 -2.39 -0.02 1.17 16 45 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.05 1.81 6.63 -2.39 -0.02 1.79 16 47 H 0.04 2.03 6.85 -2.39 -0.02 2.01 16 48 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -64.02 385.03 0.40 -63.62 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.29 Total: 31.49 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 4.25 Total: -30.37 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.83 Total: -83.10 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -2.75 Total: -27.66 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -64.02 0.40 -63.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647552897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.251 kcal (2) G-P(sol) polarization free energy of solvation -64.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds