Wall clock time and date at job start Tue Mar 31 2020 10:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00049 * 2 1 4 4 C 1.53001 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47197 * 175.00338 * 4 3 2 6 6 N 1.46903 * 109.46861 * 294.99714 * 4 3 2 7 7 C 1.46902 * 111.00166 * 270.37261 * 6 4 3 8 8 H 1.08997 * 109.47279 * 39.65174 * 7 6 4 9 9 C 1.53005 * 109.46663 * 279.65730 * 7 6 4 10 10 C 1.50700 * 109.47222 * 159.65855 * 7 6 4 11 11 C 1.38296 * 119.93120 * 39.72271 * 10 7 6 12 12 C 1.38096 * 120.06482 * 179.72463 * 11 10 7 13 13 C 1.38883 * 119.93566 * 0.55132 * 12 11 10 14 14 O 1.35745 * 120.07325 * 179.74406 * 13 12 11 15 15 C 1.34822 * 117.00297 * 185.77487 * 14 13 12 16 16 H 1.08003 * 119.99898 * 5.48213 * 15 14 13 17 17 C 1.38658 * 120.00372 * 185.47481 * 15 14 13 18 18 N 1.31554 * 119.99994 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99805 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46998 * 90.00861 * 19 17 15 21 21 H 1.48504 * 109.46856 * 210.00403 * 19 17 15 22 22 H 1.48496 * 109.47229 * 330.00547 * 19 17 15 23 23 C 1.38882 * 119.85527 * 359.72125 * 13 12 11 24 24 C 1.38098 * 119.93483 * 0.02562 * 23 13 12 25 25 C 1.52993 * 109.47329 * 54.99674 * 4 3 2 26 26 C 1.53003 * 109.47009 * 64.86813 * 25 4 3 27 27 C 1.53004 * 109.47237 * 184.86785 * 25 4 3 28 28 H 1.09005 * 109.47651 * 59.99599 * 1 2 3 29 29 H 1.09005 * 109.47000 * 300.00318 * 1 2 3 30 30 H 1.08998 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47233 * 300.00249 * 3 2 1 32 32 H 1.09004 * 109.47123 * 60.00054 * 3 2 1 33 33 H 1.00900 * 111.00206 * 34.32139 * 6 4 3 34 34 H 1.08992 * 109.47480 * 55.03606 * 9 7 6 35 35 H 1.09003 * 109.47003 * 175.03516 * 9 7 6 36 36 H 1.09001 * 109.46796 * 295.03153 * 9 7 6 37 37 H 1.08000 * 119.96853 * 359.97438 * 11 10 7 38 38 H 1.08002 * 120.03661 * 180.26911 * 12 11 10 39 39 H 0.96990 * 120.00317 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.03127 * 179.97438 * 23 13 12 41 41 H 1.07994 * 119.96638 * 180.02562 * 24 23 13 42 42 H 1.09002 * 109.47436 * 304.87020 * 25 4 3 43 43 H 1.08996 * 109.46953 * 60.00255 * 26 25 4 44 44 H 1.09002 * 109.47062 * 179.97438 * 26 25 4 45 45 H 1.08998 * 109.46848 * 299.99827 * 26 25 4 46 46 H 1.08996 * 109.46883 * 65.00905 * 27 25 4 47 47 H 1.08995 * 109.47447 * 185.01019 * 27 25 4 48 48 H 1.09005 * 109.47092 * 305.01324 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0902 6 7 3.9778 0.5623 1.2544 7 6 4.2263 1.5776 2.2865 8 1 3.4601 2.3506 2.2278 9 6 5.6031 2.2063 2.0624 10 6 4.1846 0.9313 3.6473 11 6 4.7430 -0.3201 3.8342 12 6 4.7114 -0.9124 5.0813 13 6 4.1080 -0.2552 6.1457 14 8 4.0708 -0.8372 7.3715 15 6 3.3674 -0.2013 8.3299 16 1 2.7935 0.6799 8.0837 17 6 3.3806 -0.6786 9.6317 18 7 4.0799 -1.7518 9.9317 19 14 2.4054 0.2022 10.9593 20 1 1.0358 -0.3679 11.0280 21 1 3.0814 0.0252 12.2697 22 1 2.3237 1.6492 10.6359 23 6 3.5432 0.9989 5.9533 24 6 3.5826 1.5883 4.7050 25 6 3.9781 0.3197 -1.1825 26 6 3.6246 1.0268 -2.4925 27 6 5.4905 0.0984 -1.1143 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 3.3089 -0.1221 1.5741 34 1 5.6635 2.5962 1.0465 35 1 5.7513 3.0194 2.7731 36 1 6.3754 1.4510 2.2083 37 1 5.2077 -0.8328 3.0051 38 1 5.1514 -1.8878 5.2278 39 1 4.0894 -2.0855 10.8423 40 1 3.0729 1.5123 6.7789 41 1 3.1440 2.5636 4.5549 42 1 3.4677 -0.6425 -1.1399 43 1 4.1350 1.9890 -2.5351 44 1 3.9404 0.4109 -3.3345 45 1 2.5472 1.1845 -2.5410 46 1 5.7328 -0.4832 -0.2249 47 1 5.8190 -0.4417 -2.0022 48 1 5.9970 1.0624 -1.0672 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086695708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:34 Heat of formation + Delta-G solvation = -62.628860 kcal Electronic energy + Delta-G solvation = -25700.921351 eV Core-core repulsion = 22142.200502 eV Total energy + Delta-G solvation = -3558.720849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.48934 -38.78125 -37.21851 -36.19827 -34.22827 -32.24216 -30.73467 -30.12443 -28.34088 -27.86775 -26.90413 -26.02089 -25.35778 -23.36500 -22.13265 -21.71504 -19.95683 -19.70544 -17.91620 -17.00228 -16.44254 -16.21329 -15.99246 -15.37401 -15.03654 -14.58266 -14.49205 -14.05611 -13.89147 -13.62173 -13.51579 -13.44210 -12.85177 -12.67849 -12.47951 -12.40732 -12.28674 -12.13228 -12.01604 -11.82745 -11.66319 -11.58328 -11.29890 -11.22285 -10.95436 -10.81278 -10.67615 -10.58323 -10.46438 -10.39410 -10.22271 -9.80153 -9.34082 -8.80905 -8.23349 -8.12537 -7.14111 -6.43756 -4.02454 2.26621 2.34958 3.12970 3.13528 3.18388 3.57689 3.97509 4.28785 4.59562 4.64910 4.81453 5.05120 5.08667 5.11415 5.13806 5.15988 5.24777 5.27832 5.32981 5.36306 5.45975 5.50340 5.53125 5.64755 5.68675 5.72005 5.84971 5.86033 5.93191 5.95086 6.00088 6.06374 6.13307 6.27824 6.39105 6.46107 6.50215 6.51354 6.77805 6.89741 6.95315 7.08340 7.16054 7.30792 7.46723 7.49377 7.66229 7.87593 8.01489 9.02005 9.73430 10.74473 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.002894 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.665827 B = 9674.393954 C =10192.843539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.029 3.971 4 C 0.096 3.904 5 H 0.085 0.915 6 N -0.672 5.672 7 C 0.142 3.858 8 H 0.035 0.965 9 C -0.132 4.132 10 C -0.188 4.188 11 C -0.052 4.052 12 C -0.195 4.195 13 C 0.155 3.845 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.235 4.235 24 C -0.067 4.067 25 C -0.080 4.080 26 C -0.147 4.147 27 C -0.133 4.133 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.354 0.646 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.041 0.959 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 7.281 -21.063 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.049 4.049 4 C -0.014 4.014 5 H 0.103 0.897 6 N -0.304 5.304 7 C 0.033 3.967 8 H 0.053 0.947 9 C -0.190 4.190 10 C -0.189 4.189 11 C -0.071 4.071 12 C -0.215 4.215 13 C 0.101 3.899 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.254 4.254 24 C -0.086 4.086 25 C -0.100 4.100 26 C -0.205 4.205 27 C -0.191 4.191 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.175 0.825 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.060 0.940 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.242 6.724 -20.929 22.097 hybrid contribution -1.776 1.128 1.007 2.332 sum -4.017 7.852 -19.922 21.787 Atomic orbital electron populations 1.22729 0.81251 1.02776 0.99691 1.87875 1.19405 1.27366 1.95274 1.23328 0.96304 0.85232 1.00057 1.21760 0.89631 0.98384 0.91648 0.89730 1.60597 1.51197 1.15636 1.02995 1.20146 0.96303 0.91927 0.88336 0.94749 1.21802 0.96986 1.00230 1.00004 1.19218 1.08230 0.97289 0.94203 1.20495 0.97018 0.94068 0.95471 1.20258 1.07937 1.01590 0.91688 1.19434 0.92567 0.90900 0.86965 1.83991 1.63388 1.45795 1.15036 1.21298 1.25949 1.12113 0.87360 0.89209 1.25280 0.97497 0.96517 0.97234 1.70033 1.38351 1.21135 1.20275 0.85730 0.79078 0.79261 0.79460 1.19908 1.20250 1.19253 1.21105 1.09045 0.97339 0.97930 1.20567 0.97550 0.97995 0.92465 1.20972 0.97008 0.99523 0.92448 1.21883 1.00895 1.00310 0.97407 1.21667 0.94616 1.01264 1.01517 0.94442 0.94149 0.89575 0.93158 0.93560 0.82546 0.93500 0.92897 0.91918 0.86196 0.86636 0.92038 0.85748 0.88001 0.90338 0.93115 0.92759 0.93089 0.91121 0.94023 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.30 9.10 -35.23 -0.32 -4.62 16 3 C 0.03 0.29 5.22 37.16 0.19 0.49 16 4 C 0.10 0.99 1.76 -67.71 -0.12 0.87 16 5 H 0.08 0.83 6.78 -51.93 -0.35 0.48 16 6 N -0.67 -8.21 4.52 -100.95 -0.46 -8.67 16 7 C 0.14 1.89 2.66 -68.86 -0.18 1.71 16 8 H 0.03 0.45 7.32 -51.93 -0.38 0.07 16 9 C -0.13 -1.63 9.36 37.16 0.35 -1.28 16 10 C -0.19 -3.16 4.73 -104.58 -0.49 -3.65 16 11 C -0.05 -0.93 9.09 -39.61 -0.36 -1.29 16 12 C -0.20 -4.18 9.99 -39.39 -0.39 -4.57 16 13 C 0.16 3.78 6.65 -39.10 -0.26 3.52 16 14 O -0.18 -5.15 9.76 0.09 0.00 -5.15 16 15 C -0.39 -11.01 9.44 30.89 0.29 -10.72 16 16 H 0.09 2.35 5.30 -52.48 -0.28 2.07 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 19 Si 0.94 20.64 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.23 -5.13 9.13 -39.39 -0.36 -5.49 16 24 C -0.07 -1.23 9.66 -39.61 -0.38 -1.61 16 25 C -0.08 -0.78 2.56 -90.62 -0.23 -1.02 16 26 C -0.15 -1.20 8.95 37.16 0.33 -0.87 16 27 C -0.13 -1.32 8.89 37.16 0.33 -0.99 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.44 6.81 -51.93 -0.35 0.08 16 32 H 0.05 0.49 7.70 -51.93 -0.40 0.09 16 33 H 0.35 4.90 7.31 -39.29 -0.29 4.61 16 34 H 0.05 0.50 7.09 -51.93 -0.37 0.13 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.12 1.93 7.70 -52.49 -0.40 1.53 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.12 2.74 5.72 -52.48 -0.30 2.44 16 41 H 0.10 1.61 8.03 -52.49 -0.42 1.19 16 42 H 0.08 0.89 7.40 -51.93 -0.38 0.51 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.41 6.67 -51.93 -0.35 0.06 16 46 H 0.07 0.80 7.65 -51.93 -0.40 0.40 16 47 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -29.77 383.62 -7.57 -37.34 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.04 Total: 6.99 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -0.27 Total: -22.54 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.30 Total: -33.41 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.32 Total: -9.77 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.77 -7.57 -37.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086695708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.291 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds