Wall clock time and date at job start Tue Mar 31 2020 10:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00049 * 2 1 4 4 C 1.53001 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47197 * 175.00338 * 4 3 2 6 6 N 1.46903 * 109.46861 * 294.99714 * 4 3 2 7 7 C 1.46902 * 111.00166 * 270.37261 * 6 4 3 8 8 H 1.08997 * 109.47279 * 39.65174 * 7 6 4 9 9 C 1.53005 * 109.46663 * 279.65730 * 7 6 4 10 10 C 1.50700 * 109.47222 * 159.65855 * 7 6 4 11 11 C 1.38296 * 119.93120 * 39.72271 * 10 7 6 12 12 C 1.38096 * 120.06482 * 179.72463 * 11 10 7 13 13 C 1.38883 * 119.93566 * 0.55132 * 12 11 10 14 14 O 1.35745 * 120.07325 * 179.74406 * 13 12 11 15 15 C 1.34822 * 117.00297 * 185.77487 * 14 13 12 16 16 H 1.08003 * 119.99898 * 5.48213 * 15 14 13 17 17 C 1.38658 * 120.00372 * 185.47481 * 15 14 13 18 18 N 1.31554 * 119.99994 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99805 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46998 * 90.00861 * 19 17 15 21 21 H 1.48504 * 109.46856 * 210.00403 * 19 17 15 22 22 H 1.48496 * 109.47229 * 330.00547 * 19 17 15 23 23 C 1.38882 * 119.85527 * 359.72125 * 13 12 11 24 24 C 1.38098 * 119.93483 * 0.02562 * 23 13 12 25 25 C 1.52993 * 109.47329 * 54.99674 * 4 3 2 26 26 C 1.53003 * 109.47009 * 64.86813 * 25 4 3 27 27 C 1.53004 * 109.47237 * 184.86785 * 25 4 3 28 28 H 1.09005 * 109.47651 * 59.99599 * 1 2 3 29 29 H 1.09005 * 109.47000 * 300.00318 * 1 2 3 30 30 H 1.08998 * 109.47337 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47233 * 300.00249 * 3 2 1 32 32 H 1.09004 * 109.47123 * 60.00054 * 3 2 1 33 33 H 1.00900 * 111.00206 * 34.32139 * 6 4 3 34 34 H 1.08992 * 109.47480 * 55.03606 * 9 7 6 35 35 H 1.09003 * 109.47003 * 175.03516 * 9 7 6 36 36 H 1.09001 * 109.46796 * 295.03153 * 9 7 6 37 37 H 1.08000 * 119.96853 * 359.97438 * 11 10 7 38 38 H 1.08002 * 120.03661 * 180.26911 * 12 11 10 39 39 H 0.96990 * 120.00317 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.03127 * 179.97438 * 23 13 12 41 41 H 1.07994 * 119.96638 * 180.02562 * 24 23 13 42 42 H 1.09002 * 109.47436 * 304.87020 * 25 4 3 43 43 H 1.08996 * 109.46953 * 60.00255 * 26 25 4 44 44 H 1.09002 * 109.47062 * 179.97438 * 26 25 4 45 45 H 1.08998 * 109.46848 * 299.99827 * 26 25 4 46 46 H 1.08996 * 109.46883 * 65.00905 * 27 25 4 47 47 H 1.08995 * 109.47447 * 185.01019 * 27 25 4 48 48 H 1.09005 * 109.47092 * 305.01324 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0902 6 7 3.9778 0.5623 1.2544 7 6 4.2263 1.5776 2.2865 8 1 3.4601 2.3506 2.2278 9 6 5.6031 2.2063 2.0624 10 6 4.1846 0.9313 3.6473 11 6 4.7430 -0.3201 3.8342 12 6 4.7114 -0.9124 5.0813 13 6 4.1080 -0.2552 6.1457 14 8 4.0708 -0.8372 7.3715 15 6 3.3674 -0.2013 8.3299 16 1 2.7935 0.6799 8.0837 17 6 3.3806 -0.6786 9.6317 18 7 4.0799 -1.7518 9.9317 19 14 2.4054 0.2022 10.9593 20 1 1.0358 -0.3679 11.0280 21 1 3.0814 0.0252 12.2697 22 1 2.3237 1.6492 10.6359 23 6 3.5432 0.9989 5.9533 24 6 3.5826 1.5883 4.7050 25 6 3.9781 0.3197 -1.1825 26 6 3.6246 1.0268 -2.4925 27 6 5.4905 0.0984 -1.1143 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 3.3089 -0.1221 1.5741 34 1 5.6635 2.5962 1.0465 35 1 5.7513 3.0194 2.7731 36 1 6.3754 1.4510 2.2083 37 1 5.2077 -0.8328 3.0051 38 1 5.1514 -1.8878 5.2278 39 1 4.0894 -2.0855 10.8423 40 1 3.0729 1.5123 6.7789 41 1 3.1440 2.5636 4.5549 42 1 3.4677 -0.6425 -1.1399 43 1 4.1350 1.9890 -2.5351 44 1 3.9404 0.4109 -3.3345 45 1 2.5472 1.1845 -2.5410 46 1 5.7328 -0.4832 -0.2249 47 1 5.8190 -0.4417 -2.0022 48 1 5.9970 1.0624 -1.0672 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086695708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:33 Heat of formation + Delta-G solvation = -80.269510 kcal Electronic energy + Delta-G solvation = -25701.686307 eV Core-core repulsion = 22142.200502 eV Total energy + Delta-G solvation = -3559.485805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.92227 -39.98074 -38.62138 -37.27157 -35.37061 -34.20858 -31.91158 -31.63263 -29.53216 -28.97944 -27.62312 -27.35564 -26.77187 -24.36966 -23.68994 -23.06548 -21.24289 -20.63026 -19.76092 -18.81436 -17.32262 -17.12018 -16.95308 -16.43593 -16.39106 -16.12149 -15.73689 -15.48980 -15.32907 -15.17835 -14.70048 -14.38128 -14.28992 -13.98456 -13.84476 -13.53483 -13.30392 -13.19990 -12.99639 -12.90760 -12.82773 -12.76930 -12.47034 -12.34962 -12.26980 -12.18154 -12.11448 -11.77227 -11.55304 -11.38423 -11.29215 -11.19575 -10.77952 -10.56472 -9.75522 -9.19357 -8.89153 -8.47202 -6.15237 0.61904 0.70945 1.34106 1.43664 1.51788 2.17448 2.79150 2.85328 3.17083 3.36622 3.53050 3.85445 3.94609 4.07142 4.10666 4.24960 4.32613 4.37265 4.40527 4.46747 4.53334 4.57732 4.61569 4.63349 4.67914 4.71959 4.77613 4.85694 4.94417 5.00100 5.04021 5.07855 5.15275 5.16100 5.19471 5.24565 5.31315 5.40724 5.48666 5.59835 5.63031 5.71199 5.72788 5.79227 6.03152 6.17437 6.24428 6.38463 6.55269 6.97559 7.79654 8.76382 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.002894 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.665827 B = 9674.393954 C =10192.843539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.030 3.970 4 C 0.098 3.902 5 H 0.097 0.903 6 N -0.674 5.674 7 C 0.146 3.854 8 H 0.050 0.950 9 C -0.129 4.129 10 C -0.160 4.160 11 C -0.043 4.043 12 C -0.207 4.207 13 C 0.114 3.886 14 O -0.234 6.234 15 C -0.412 4.412 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.242 4.242 24 C -0.065 4.065 25 C -0.076 4.076 26 C -0.143 4.143 27 C -0.130 4.130 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.345 0.655 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.144 0.856 38 H 0.109 0.891 39 H 0.273 0.727 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 9.945 -23.763 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.048 4.048 4 C -0.012 4.012 5 H 0.115 0.885 6 N -0.305 5.305 7 C 0.037 3.963 8 H 0.067 0.933 9 C -0.187 4.187 10 C -0.161 4.161 11 C -0.061 4.061 12 C -0.226 4.226 13 C 0.064 3.936 14 O -0.141 6.141 15 C -0.488 4.488 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.261 4.261 24 C -0.083 4.083 25 C -0.095 4.095 26 C -0.200 4.200 27 C -0.187 4.187 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.164 0.836 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.049 9.415 -23.700 25.684 hybrid contribution -1.479 0.352 1.449 2.100 sum -4.528 9.767 -22.251 24.719 Atomic orbital electron populations 1.22843 0.80234 1.03389 1.00351 1.87852 1.20631 1.28193 1.95414 1.23341 0.95939 0.84926 1.00616 1.21834 0.90049 0.98812 0.90544 0.88468 1.60611 1.51257 1.15276 1.03345 1.20167 0.97711 0.92153 0.86254 0.93256 1.21768 0.95490 0.99900 1.01536 1.19720 1.04403 0.96107 0.95823 1.20745 0.96352 0.94519 0.94510 1.20480 1.07961 1.01684 0.92479 1.19940 0.94664 0.92564 0.86439 1.83949 1.65607 1.47790 1.16708 1.21789 1.26550 1.12523 0.87982 0.88264 1.26595 0.98640 0.97302 0.99564 1.70183 1.41207 1.23579 1.21030 0.84594 0.77440 0.78495 0.75718 1.18824 1.19555 1.17614 1.21202 1.08921 0.96624 0.99391 1.20924 0.97030 0.99259 0.91126 1.20906 0.96624 0.98792 0.93184 1.21837 1.01170 1.00632 0.96401 1.21622 0.94771 1.01322 1.00998 0.92825 0.94385 0.89132 0.91458 0.94075 0.83595 0.91257 0.92671 0.92978 0.83865 0.87265 0.91844 0.86542 0.84499 0.92180 0.92084 0.92411 0.92859 0.92822 0.93445 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.69 16 2 O -0.40 -8.25 9.10 -148.98 -1.36 -9.61 16 3 C 0.03 0.51 5.22 71.98 0.38 0.88 16 4 C 0.10 1.68 1.76 44.91 0.08 1.75 16 5 H 0.10 1.47 6.78 -2.39 -0.02 1.45 16 6 N -0.67 -14.50 4.52 -473.30 -2.14 -16.64 16 7 C 0.15 3.36 2.66 44.17 0.12 3.48 16 8 H 0.05 1.05 7.32 -2.39 -0.02 1.03 16 9 C -0.13 -2.68 9.36 71.98 0.67 -2.01 16 10 C -0.16 -4.97 4.73 -19.83 -0.09 -5.06 16 11 C -0.04 -1.50 9.09 22.25 0.20 -1.29 16 12 C -0.21 -9.09 9.99 22.39 0.22 -8.87 16 13 C 0.11 5.80 6.65 22.58 0.15 5.95 16 14 O -0.23 -14.37 9.76 -22.60 -0.22 -14.59 16 15 C -0.41 -24.38 9.44 67.92 0.64 -23.74 16 16 H 0.10 5.39 5.30 -2.91 -0.02 5.38 16 17 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 18 N -0.92 -57.39 13.67 21.61 0.30 -57.10 16 19 Si 1.02 43.29 29.55 68.60 2.03 45.31 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 23 C -0.24 -10.68 9.13 22.39 0.20 -10.48 16 24 C -0.06 -2.24 9.66 22.25 0.21 -2.03 16 25 C -0.08 -1.28 2.56 -10.79 -0.03 -1.31 16 26 C -0.14 -1.87 8.95 71.98 0.64 -1.23 16 27 C -0.13 -2.24 8.89 71.98 0.64 -1.60 16 28 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 0.93 6.81 -2.39 -0.02 0.91 16 32 H 0.04 0.74 7.70 -2.38 -0.02 0.73 16 33 H 0.34 8.75 7.31 -89.69 -0.66 8.09 16 34 H 0.07 1.17 7.09 -2.39 -0.02 1.15 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.14 4.34 7.70 -2.91 -0.02 4.32 16 38 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 39 H 0.27 15.51 8.31 -92.72 -0.77 14.74 16 40 H 0.12 5.25 5.72 -2.91 -0.02 5.23 16 41 H 0.14 3.80 8.03 -2.91 -0.02 3.77 16 42 H 0.06 1.26 7.40 -2.39 -0.02 1.24 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 0.68 6.67 -2.39 -0.02 0.66 16 46 H 0.05 1.11 7.65 -2.39 -0.02 1.09 16 47 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.05 0.82 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -69.18 383.62 4.65 -64.53 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.28 Total: 32.83 kcal Atomic # 6 Polarization: -50.50 SS G_CDS: 5.76 Total: -44.74 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.84 Total: -73.74 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -1.58 Total: -24.19 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -69.18 4.65 -64.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086695708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.737 kcal (2) G-P(sol) polarization free energy of solvation -69.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds