Wall clock time and date at job start Tue Mar 31 2020 11:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.46559 * 2 1 4 4 C 1.53005 * 109.46754 * 240.00553 * 2 1 3 5 5 C 1.53003 * 109.46862 * 67.02305 * 4 2 1 6 6 C 1.53001 * 109.47474 * 52.91205 * 5 4 2 7 7 C 1.53002 * 109.46732 * 172.91383 * 5 4 2 8 8 O 1.42897 * 109.46995 * 292.90828 * 5 4 2 9 9 N 1.46891 * 109.47344 * 120.00541 * 2 1 3 10 10 C 1.46900 * 111.00034 * 203.02693 * 9 2 1 11 11 H 1.09002 * 109.46982 * 327.03378 * 10 9 2 12 12 C 1.53001 * 109.47196 * 87.03759 * 10 9 2 13 13 C 1.50697 * 109.47170 * 207.03595 * 10 9 2 14 14 C 1.38304 * 119.93394 * 140.00026 * 13 10 9 15 15 C 1.38098 * 120.07085 * 179.97438 * 14 13 10 16 16 C 1.38872 * 119.92979 * 359.97438 * 15 14 13 17 17 O 1.35756 * 120.06788 * 179.97438 * 16 15 14 18 18 C 1.34833 * 117.00142 * 354.24607 * 17 16 15 19 19 H 1.07997 * 119.99557 * 5.16283 * 18 17 16 20 20 C 1.38654 * 120.00132 * 185.16281 * 18 17 16 21 21 N 1.31553 * 119.99869 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99648 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47446 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47072 * 120.00061 * 22 20 18 25 25 H 1.48508 * 109.47116 * 239.99892 * 22 20 18 26 26 C 1.38880 * 119.86838 * 0.02562 * 16 15 14 27 27 C 1.38105 * 119.92654 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47245 * 49.08842 * 1 2 3 29 29 H 1.09007 * 109.46884 * 169.09019 * 1 2 3 30 30 H 1.08999 * 109.46716 * 289.08675 * 1 2 3 31 31 H 1.09001 * 109.46578 * 187.01765 * 4 2 1 32 32 H 1.08998 * 109.47450 * 307.01846 * 4 2 1 33 33 H 1.09000 * 109.46353 * 62.34216 * 6 5 4 34 34 H 1.08998 * 109.46733 * 182.33742 * 6 5 4 35 35 H 1.08996 * 109.46814 * 302.34162 * 6 5 4 36 36 H 1.09005 * 109.47029 * 59.99683 * 7 5 4 37 37 H 1.09002 * 109.46969 * 179.97438 * 7 5 4 38 38 H 1.09001 * 109.47423 * 299.99742 * 7 5 4 39 39 H 0.96698 * 114.00581 * 300.00286 * 8 5 4 40 40 H 1.00906 * 111.00072 * 79.07153 * 9 2 1 41 41 H 1.08995 * 109.46963 * 184.83443 * 12 10 9 42 42 H 1.09001 * 109.46615 * 304.82976 * 12 10 9 43 43 H 1.08994 * 109.47292 * 64.82634 * 12 10 9 44 44 H 1.08002 * 119.95957 * 0.25009 * 14 13 10 45 45 H 1.07998 * 120.03224 * 180.02562 * 15 14 13 46 46 H 0.97001 * 119.99597 * 179.97438 * 21 20 18 47 47 H 1.08001 * 120.03845 * 179.97438 * 26 16 15 48 48 H 1.08000 * 119.96498 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6790 0.0949 -2.4923 6 6 2.1775 1.5314 -2.3218 7 6 2.3386 -0.5312 -3.7227 8 8 0.2603 0.1001 -2.6632 9 7 2.0198 -0.6926 1.1993 10 6 3.3852 -0.2658 1.5330 11 1 3.9289 -0.0379 0.6162 12 6 3.3280 0.9825 2.4158 13 6 4.0907 -1.3727 2.2733 14 6 5.4199 -1.6445 2.0051 15 6 6.0693 -2.6578 2.6822 16 6 5.3863 -3.4039 3.6338 17 8 6.0218 -4.4011 4.3007 18 6 7.2783 -4.6952 3.9098 19 1 7.7645 -4.0926 3.1570 20 6 7.9459 -5.7714 4.4743 21 7 7.3537 -6.5052 5.3916 22 14 9.6869 -6.1784 3.9331 23 1 10.1228 -5.2080 2.8971 24 1 10.5998 -6.0991 5.1017 25 1 9.7219 -7.5521 3.3700 26 6 4.0516 -3.1287 3.9010 27 6 3.4077 -2.1140 3.2204 28 1 -0.3633 0.6730 -0.7766 29 1 -0.3633 -1.0092 -0.1945 30 1 -0.3633 0.3361 0.9712 31 1 3.1228 -0.8312 -1.1888 32 1 1.5778 -1.7061 -1.3145 33 1 3.2639 1.5307 -2.2331 34 1 1.8840 2.1230 -3.1889 35 1 1.7397 1.9634 -1.4220 36 1 1.9835 -1.5546 -3.8441 37 1 2.0811 0.0498 -4.6082 38 1 3.4208 -0.5353 -3.5924 39 1 -0.1254 -0.7793 -2.7773 40 1 1.9720 -1.6938 1.0835 41 1 4.3391 1.3491 2.5926 42 1 2.7438 1.7548 1.9155 43 1 2.8602 0.7329 3.3681 44 1 5.9519 -1.0606 1.2685 45 1 7.1074 -2.8693 2.4726 46 1 7.8207 -7.2582 5.7862 47 1 3.5176 -3.7075 4.6401 48 1 2.3699 -1.8991 3.4280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296578021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:12 Heat of formation + Delta-G solvation = -67.817335 kcal Electronic energy + Delta-G solvation = -25569.149237 eV Core-core repulsion = 22010.203398 eV Total energy + Delta-G solvation = -3558.945838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.64561 -38.99942 -37.42494 -35.78447 -33.22585 -32.35394 -31.87694 -30.20566 -28.43064 -27.96230 -27.58413 -26.79779 -25.40034 -22.61220 -22.10701 -21.10562 -20.15468 -19.94227 -17.94836 -17.16045 -16.76397 -15.88669 -15.68857 -15.33904 -14.79706 -14.53201 -14.18475 -13.94197 -13.90596 -13.61841 -13.57103 -12.96106 -12.82847 -12.70798 -12.55115 -12.47518 -12.42111 -12.30631 -12.11067 -11.86750 -11.75930 -11.67658 -11.44893 -11.30443 -11.18163 -10.93761 -10.69398 -10.65872 -10.61107 -10.43585 -10.29501 -9.95684 -9.34361 -8.84502 -8.27189 -8.17571 -7.18401 -6.46650 -4.05523 2.21643 2.29867 3.10469 3.11985 3.17500 3.94348 3.95018 4.20821 4.46878 4.54751 4.62309 4.75918 4.96438 5.07618 5.10245 5.16238 5.29917 5.32388 5.33657 5.41545 5.46455 5.56986 5.62677 5.68200 5.68907 5.71972 5.79834 5.85469 5.86810 5.91317 6.00071 6.03583 6.10020 6.15805 6.23214 6.37221 6.41190 6.49887 6.72760 6.87760 7.04062 7.10766 7.26971 7.40996 7.42739 7.45838 7.59342 7.82717 7.98620 8.99184 9.69816 10.71522 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.020762 B = 0.002748 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.289688 B =10186.059303 C =10762.912609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.080 0.920 4 C -0.176 4.176 5 C 0.132 3.868 6 C -0.143 4.143 7 C -0.179 4.179 8 O -0.556 6.556 9 N -0.679 5.679 10 C 0.142 3.858 11 H 0.040 0.960 12 C -0.132 4.132 13 C -0.192 4.192 14 C -0.066 4.066 15 C -0.235 4.235 16 C 0.155 3.845 17 O -0.179 6.179 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.195 4.195 27 C -0.056 4.056 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.373 0.627 40 H 0.343 0.657 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.125 0.875 46 H 0.269 0.731 47 H 0.116 0.884 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 12.968 -14.656 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.215 4.215 5 C 0.091 3.909 6 C -0.200 4.200 7 C -0.237 4.237 8 O -0.362 6.362 9 N -0.310 5.310 10 C 0.033 3.967 11 H 0.058 0.942 12 C -0.190 4.190 13 C -0.193 4.193 14 C -0.085 4.085 15 C -0.254 4.254 16 C 0.101 3.899 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.214 4.214 27 C -0.075 4.075 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.221 0.779 40 H 0.162 0.838 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.143 0.857 46 H 0.079 0.921 47 H 0.134 0.866 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.367 13.701 -13.802 22.039 hybrid contribution 1.569 -1.438 -1.057 2.376 sum -8.798 12.264 -14.860 21.181 Atomic orbital electron populations 1.21934 0.94127 1.01832 1.02017 1.21691 0.96124 0.98018 0.86731 0.90194 1.23058 1.02133 0.99746 0.96599 1.21093 0.80970 0.95959 0.92872 1.21857 1.00841 0.94460 1.02884 1.22509 1.01610 1.01017 0.98539 1.86549 1.20284 1.34136 1.95221 1.60813 1.22940 1.11438 1.35841 1.20145 0.87316 0.93519 0.95766 0.94194 1.21777 1.00758 0.96188 1.00232 1.19306 0.94863 1.01536 1.03608 1.20576 0.93690 0.96185 0.98038 1.21113 1.01272 1.00548 1.02454 1.19420 0.91608 0.88692 0.90150 1.83983 1.28269 1.44734 1.51210 1.21365 0.87759 1.13799 1.23865 0.89079 1.25288 1.00082 0.95069 0.96095 1.70048 1.37481 1.17232 1.24980 0.85655 0.80404 0.78771 0.78642 1.19134 1.20121 1.20138 1.20261 0.92848 1.02679 1.05601 1.20501 0.98768 0.93837 0.94385 0.90543 0.93639 0.92704 0.91125 0.91502 0.91353 0.92086 0.91248 0.92407 0.91939 0.91655 0.77933 0.83760 0.92909 0.93475 0.92083 0.87912 0.85685 0.92065 0.86601 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.57 37.16 0.32 -1.04 16 2 C 0.08 0.84 2.14 -67.71 -0.14 0.70 16 3 H 0.08 0.83 4.97 -51.93 -0.26 0.57 16 4 C -0.18 -1.60 4.05 -26.73 -0.11 -1.71 16 5 C 0.13 1.07 1.08 -90.62 -0.10 0.97 16 6 C -0.14 -1.16 8.39 37.16 0.31 -0.85 16 7 C -0.18 -1.33 8.81 37.16 0.33 -1.00 16 8 O -0.56 -4.55 9.95 -35.23 -0.35 -4.90 16 9 N -0.68 -8.15 5.46 -100.95 -0.55 -8.70 16 10 C 0.14 1.87 2.59 -68.87 -0.18 1.70 16 11 H 0.04 0.52 6.82 -51.93 -0.35 0.16 16 12 C -0.13 -1.67 9.41 37.16 0.35 -1.32 16 13 C -0.19 -3.17 4.72 -104.57 -0.49 -3.66 16 14 C -0.07 -1.19 9.66 -39.61 -0.38 -1.57 16 15 C -0.23 -5.05 9.17 -39.40 -0.36 -5.41 16 16 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 17 O -0.18 -5.10 9.76 0.02 0.00 -5.10 16 18 C -0.39 -10.93 9.49 30.89 0.29 -10.64 16 19 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.30 13.67 55.48 0.76 -24.54 16 22 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 C -0.19 -4.09 9.99 -39.39 -0.39 -4.49 16 27 C -0.06 -0.99 8.95 -39.60 -0.35 -1.35 16 28 H 0.08 0.73 6.14 -51.93 -0.32 0.41 16 29 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.72 7.23 -51.93 -0.38 0.34 16 32 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.59 6.03 -51.93 -0.31 0.28 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.37 2.05 9.05 45.56 0.41 2.46 16 40 H 0.34 4.36 7.69 -39.29 -0.30 4.06 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.53 7.51 -51.93 -0.39 0.14 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.59 8.03 -52.49 -0.42 1.17 16 45 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 46 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 48 H 0.12 1.87 7.71 -52.49 -0.40 1.47 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -30.02 378.52 -7.80 -37.82 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.07 Total: 9.49 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -1.27 Total: -25.23 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.21 Total: -33.25 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.35 Total: -10.00 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.02 -7.80 -37.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296578021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.996 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds