Wall clock time and date at job start Tue Mar 31 2020 08:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47203 * 2 1 4 4 O 1.42907 * 109.47248 * 240.00161 * 2 1 3 5 5 C 1.52997 * 109.47097 * 120.00185 * 2 1 3 6 6 C 1.53006 * 109.46909 * 184.99819 * 5 2 1 7 7 C 1.53006 * 109.46923 * 180.02562 * 6 5 2 8 8 N 1.46900 * 109.47078 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00195 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47382 * 179.97438 * 9 8 7 11 11 C 1.38284 * 119.97210 * 269.97968 * 10 9 8 12 12 C 1.38250 * 120.10839 * 180.02562 * 11 10 9 13 13 C 1.38161 * 120.05581 * 359.68103 * 12 11 10 14 14 C 1.38710 * 119.94432 * 0.61525 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.67631 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46756 * 59.99920 * 22 20 18 24 24 H 1.48490 * 109.47381 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47117 * 300.00527 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 8 27 27 H 1.08998 * 109.46962 * 299.99817 * 1 2 3 28 28 H 1.08998 * 109.46766 * 59.99705 * 1 2 3 29 29 H 1.08998 * 109.46917 * 179.97438 * 1 2 3 30 30 H 0.96694 * 113.99542 * 300.00241 * 4 2 1 31 31 H 1.09004 * 109.47014 * 65.00276 * 5 2 1 32 32 H 1.08995 * 109.47429 * 304.99921 * 5 2 1 33 33 H 1.08997 * 109.47216 * 60.00654 * 6 5 2 34 34 H 1.08996 * 109.47320 * 299.99741 * 6 5 2 35 35 H 1.08996 * 109.47046 * 59.99725 * 7 6 5 36 36 H 1.09006 * 109.46798 * 299.99994 * 7 6 5 37 37 H 1.00901 * 111.00271 * 303.95429 * 8 7 6 38 38 H 1.09005 * 109.46944 * 59.99947 * 9 8 7 39 39 H 1.09002 * 109.47398 * 300.00389 * 9 8 7 40 40 H 1.07994 * 119.94418 * 0.02562 * 11 10 9 41 41 H 1.08002 * 119.97138 * 179.97438 * 12 11 10 42 42 H 1.08006 * 120.02996 * 180.29325 * 13 12 11 43 43 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 44 44 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 45 45 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 46 46 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 47 47 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 6 4.0750 -1.3352 2.5625 8 7 5.5390 -1.2310 2.6247 9 6 6.0653 -1.9138 3.8141 10 6 7.5666 -1.7864 3.8433 11 6 8.3533 -2.7443 3.2302 12 6 9.7308 -2.6306 3.2558 13 6 10.3247 -1.5555 3.8885 14 6 9.5381 -0.5966 4.5095 15 8 10.1201 0.4583 5.1383 16 6 11.5480 0.5137 5.1259 17 6 12.0165 1.7619 5.8763 18 6 13.5223 1.8207 5.8626 19 1 14.0885 1.0454 5.3679 20 6 14.1772 2.8647 6.4809 21 7 13.4876 3.8090 7.0830 22 14 16.0437 2.9371 6.4647 23 1 16.5246 2.9930 5.0608 24 1 16.4984 4.1493 7.1918 25 1 16.5918 1.7267 7.1277 26 6 8.1557 -0.7132 4.4828 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7211 -1.5951 -1.2329 31 1 1.7517 -1.7716 1.2055 32 1 1.6055 -0.2618 2.1369 33 1 3.8533 0.4369 1.3574 34 1 3.9995 -1.0728 0.4259 35 1 3.7866 -2.3854 2.5184 36 1 3.6404 -0.8760 3.4505 37 1 5.9632 -1.5914 1.7831 38 1 5.7911 -2.9682 3.7788 39 1 5.6441 -1.4587 4.7105 40 1 7.8907 -3.5827 2.7307 41 1 10.3431 -3.3802 2.7766 42 1 11.4008 -1.4646 3.9041 43 1 11.9503 -0.3752 5.6118 44 1 11.9010 0.5557 4.0955 45 1 11.6142 2.6506 5.3900 46 1 11.6635 1.7204 6.9066 47 1 13.9483 4.5437 7.5177 48 1 7.5409 0.0342 4.9621 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433173251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:35 Heat of formation + Delta-G solvation = -96.149387 kcal Electronic energy + Delta-G solvation = -23595.045952 eV Core-core repulsion = 20034.871543 eV Total energy + Delta-G solvation = -3560.174408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80300 -38.56037 -37.65387 -36.25318 -33.59721 -33.32285 -31.58040 -30.81432 -30.01696 -29.09668 -26.58309 -25.07220 -24.13513 -22.34741 -22.01871 -21.72721 -21.47367 -20.11215 -17.60305 -16.89091 -16.58137 -16.26719 -16.00022 -15.63075 -15.40018 -15.31812 -15.03967 -14.85978 -14.51005 -14.25702 -13.68408 -13.58323 -13.35210 -12.92605 -12.63686 -12.59712 -12.32838 -12.27911 -12.08915 -11.87334 -11.80502 -11.39866 -11.33603 -11.21204 -11.15544 -10.99432 -10.84725 -10.72299 -10.44115 -10.31547 -9.83968 -9.64472 -9.29820 -8.78806 -8.57794 -8.43206 -7.82339 -6.08846 -4.13631 1.46132 1.69384 3.29707 3.34012 3.35795 3.71059 3.85946 3.93880 4.15461 4.39648 4.41989 4.55079 4.58424 4.78223 4.85390 4.92948 5.02224 5.06787 5.10958 5.18353 5.27365 5.29108 5.31674 5.38633 5.42663 5.45391 5.48694 5.61209 5.65401 5.72096 5.86899 5.91037 5.98552 6.05444 6.08338 6.20869 6.56163 6.59088 6.68881 6.73735 6.76421 7.01168 7.15346 7.21619 7.52373 7.65938 7.82959 8.08814 8.25383 8.91697 9.50525 11.02637 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.001797 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.170610 B =15574.066729 C =16342.592820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.100 3.900 3 H 0.099 0.901 4 O -0.563 6.563 5 C -0.149 4.149 6 C -0.115 4.115 7 C 0.059 3.941 8 N -0.684 5.684 9 C 0.103 3.897 10 C -0.052 4.052 11 C -0.167 4.167 12 C -0.081 4.081 13 C -0.211 4.211 14 C 0.145 3.855 15 O -0.315 6.315 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.138 4.138 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.372 0.628 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.343 0.657 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.264 0.736 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.072 -14.157 -12.052 30.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.041 3.959 3 H 0.117 0.883 4 O -0.368 6.368 5 C -0.188 4.188 6 C -0.153 4.153 7 C -0.071 4.071 8 N -0.315 5.315 9 C -0.025 4.025 10 C -0.053 4.053 11 C -0.186 4.186 12 C -0.099 4.099 13 C -0.230 4.230 14 C 0.098 3.902 15 O -0.228 6.228 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.158 4.158 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.219 0.781 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.147 0.853 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.876 -12.604 -11.634 29.398 hybrid contribution 0.877 -1.494 -0.097 1.735 sum -22.998 -14.098 -11.731 29.416 Atomic orbital electron populations 1.22515 0.96575 1.02445 1.02842 1.21956 0.92591 0.96977 0.84383 0.88262 1.86618 1.77172 1.28921 1.44074 1.22277 0.96631 1.01029 0.98843 1.21509 0.94228 1.02077 0.97517 1.21998 0.88021 0.98052 0.98979 1.60450 1.04885 1.60909 1.05294 1.20830 0.90879 0.96420 0.94408 1.19382 0.94368 0.94234 0.97284 1.20761 0.93704 1.00182 1.03924 1.20839 0.94548 0.96870 0.97621 1.21393 1.00587 0.96908 1.04087 1.19204 0.92495 0.87344 0.91195 1.86178 1.24891 1.41530 1.70227 1.23326 0.74775 1.02134 1.00649 1.19119 0.95708 0.90488 0.95871 1.20939 0.90645 1.08965 1.36046 0.92424 1.24989 0.98756 0.95384 0.95030 1.69971 1.35699 1.11750 1.35297 0.86541 0.84993 0.77517 0.78278 1.20102 1.21113 1.20107 1.20262 0.91751 0.99551 1.04211 0.91490 0.91828 0.92425 0.78097 0.91819 0.90866 0.90856 0.91424 0.95589 0.91041 0.83877 0.94437 0.90083 0.86844 0.86237 0.85264 0.93170 0.93141 0.95364 0.95399 0.92659 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.85 9.53 37.16 0.35 -0.49 16 2 C 0.10 0.59 3.59 -26.73 -0.10 0.49 16 3 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 4 O -0.56 -4.01 12.88 -35.23 -0.45 -4.46 16 5 C -0.15 -0.81 4.89 -26.73 -0.13 -0.94 16 6 C -0.12 -0.83 5.37 -26.72 -0.14 -0.98 16 7 C 0.06 0.45 5.69 -3.82 -0.02 0.43 16 8 N -0.68 -6.75 6.49 -115.06 -0.75 -7.50 16 9 C 0.10 1.05 5.81 -4.98 -0.03 1.02 16 10 C -0.05 -0.67 5.39 -104.65 -0.56 -1.24 16 11 C -0.17 -2.04 9.70 -39.56 -0.38 -2.42 16 12 C -0.08 -1.07 10.04 -39.61 -0.40 -1.46 16 13 C -0.21 -3.37 9.04 -39.44 -0.36 -3.72 16 14 C 0.14 2.59 6.69 -39.22 -0.26 2.33 16 15 O -0.32 -6.66 10.14 -19.43 -0.20 -6.86 16 16 C 0.07 1.43 4.68 37.16 0.17 1.60 16 17 C 0.03 0.67 5.34 -27.89 -0.15 0.52 16 18 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 22 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.14 -2.17 9.64 -39.43 -0.38 -2.55 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.37 1.34 9.04 45.56 0.41 1.75 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.53 7.82 -51.93 -0.41 0.12 16 35 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.34 3.25 8.72 -39.29 -0.34 2.91 16 38 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 39 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 40 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 42 H 0.13 2.03 6.30 -52.48 -0.33 1.70 16 43 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 44 H 0.05 1.05 7.65 -51.93 -0.40 0.66 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -31.57 396.78 -10.26 -41.84 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.76 Total: 1.47 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -2.80 Total: -20.94 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: -0.01 Total: -33.39 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.65 Total: -11.32 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.57 -10.26 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433173251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.312 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds