Wall clock time and date at job start Tue Mar 31 2020 08:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47203 * 2 1 4 4 O 1.42907 * 109.47248 * 240.00161 * 2 1 3 5 5 C 1.52997 * 109.47097 * 120.00185 * 2 1 3 6 6 C 1.53006 * 109.46909 * 184.99819 * 5 2 1 7 7 C 1.53006 * 109.46923 * 180.02562 * 6 5 2 8 8 N 1.46900 * 109.47078 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00195 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47382 * 179.97438 * 9 8 7 11 11 C 1.38284 * 119.97210 * 269.97968 * 10 9 8 12 12 C 1.38250 * 120.10839 * 180.02562 * 11 10 9 13 13 C 1.38161 * 120.05581 * 359.68103 * 12 11 10 14 14 C 1.38710 * 119.94432 * 0.61525 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.67631 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46756 * 59.99920 * 22 20 18 24 24 H 1.48490 * 109.47381 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47117 * 300.00527 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 8 27 27 H 1.08998 * 109.46962 * 299.99817 * 1 2 3 28 28 H 1.08998 * 109.46766 * 59.99705 * 1 2 3 29 29 H 1.08998 * 109.46917 * 179.97438 * 1 2 3 30 30 H 0.96694 * 113.99542 * 300.00241 * 4 2 1 31 31 H 1.09004 * 109.47014 * 65.00276 * 5 2 1 32 32 H 1.08995 * 109.47429 * 304.99921 * 5 2 1 33 33 H 1.08997 * 109.47216 * 60.00654 * 6 5 2 34 34 H 1.08996 * 109.47320 * 299.99741 * 6 5 2 35 35 H 1.08996 * 109.47046 * 59.99725 * 7 6 5 36 36 H 1.09006 * 109.46798 * 299.99994 * 7 6 5 37 37 H 1.00901 * 111.00271 * 303.95429 * 8 7 6 38 38 H 1.09005 * 109.46944 * 59.99947 * 9 8 7 39 39 H 1.09002 * 109.47398 * 300.00389 * 9 8 7 40 40 H 1.07994 * 119.94418 * 0.02562 * 11 10 9 41 41 H 1.08002 * 119.97138 * 179.97438 * 12 11 10 42 42 H 1.08006 * 120.02996 * 180.29325 * 13 12 11 43 43 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 44 44 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 45 45 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 46 46 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 47 47 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5649 -0.6133 1.3136 7 6 4.0750 -1.3352 2.5625 8 7 5.5390 -1.2310 2.6247 9 6 6.0653 -1.9138 3.8141 10 6 7.5666 -1.7864 3.8433 11 6 8.3533 -2.7443 3.2302 12 6 9.7308 -2.6306 3.2558 13 6 10.3247 -1.5555 3.8885 14 6 9.5381 -0.5966 4.5095 15 8 10.1201 0.4583 5.1383 16 6 11.5480 0.5137 5.1259 17 6 12.0165 1.7619 5.8763 18 6 13.5223 1.8207 5.8626 19 1 14.0885 1.0454 5.3679 20 6 14.1772 2.8647 6.4809 21 7 13.4876 3.8090 7.0830 22 14 16.0437 2.9371 6.4647 23 1 16.5246 2.9930 5.0608 24 1 16.4984 4.1493 7.1918 25 1 16.5918 1.7267 7.1277 26 6 8.1557 -0.7132 4.4828 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7211 -1.5951 -1.2329 31 1 1.7517 -1.7716 1.2055 32 1 1.6055 -0.2618 2.1369 33 1 3.8533 0.4369 1.3574 34 1 3.9995 -1.0728 0.4259 35 1 3.7866 -2.3854 2.5184 36 1 3.6404 -0.8760 3.4505 37 1 5.9632 -1.5914 1.7831 38 1 5.7911 -2.9682 3.7788 39 1 5.6441 -1.4587 4.7105 40 1 7.8907 -3.5827 2.7307 41 1 10.3431 -3.3802 2.7766 42 1 11.4008 -1.4646 3.9041 43 1 11.9503 -0.3752 5.6118 44 1 11.9010 0.5557 4.0955 45 1 11.6142 2.6506 5.3900 46 1 11.6635 1.7204 6.9066 47 1 13.9483 4.5437 7.5177 48 1 7.5409 0.0342 4.9621 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433173251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:34 Heat of formation + Delta-G solvation = -117.206192 kcal Electronic energy + Delta-G solvation = -23595.959043 eV Core-core repulsion = 20034.871543 eV Total energy + Delta-G solvation = -3561.087500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.08167 -39.16305 -38.77958 -37.09967 -35.47628 -34.21956 -32.59520 -32.31437 -30.91680 -30.38595 -27.42009 -26.85071 -25.02632 -23.53833 -23.25905 -22.55173 -22.18239 -21.46856 -19.10864 -18.14699 -17.43072 -17.17216 -16.95833 -16.93620 -16.84651 -16.49517 -16.36886 -15.69487 -15.53941 -15.00702 -14.62046 -14.48848 -14.32800 -14.28861 -14.08108 -13.82169 -13.52534 -13.03560 -13.02836 -12.85640 -12.66488 -12.61170 -12.56063 -12.45341 -12.38627 -12.24677 -11.80430 -11.61555 -11.59652 -11.58188 -11.54340 -11.39070 -10.81469 -10.61961 -9.83555 -9.35960 -9.08697 -8.26860 -6.41116 0.34357 0.53247 1.40636 1.44916 1.52954 2.27122 2.51260 2.75039 3.07267 3.31203 3.57731 3.82803 3.87477 3.92820 4.07306 4.11823 4.14332 4.23200 4.25650 4.29653 4.36415 4.42052 4.50155 4.54626 4.60680 4.64584 4.70858 4.72625 4.83693 4.86817 4.89900 4.99713 5.10620 5.13749 5.27300 5.30525 5.38724 5.42637 5.44496 5.45467 5.51975 5.60678 5.68032 5.89623 6.06130 6.09232 6.44952 6.57483 6.73315 6.90353 7.29044 8.86039 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.020718 B = 0.001797 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.170610 B =15574.066729 C =16342.592820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.098 3.902 3 H 0.084 0.916 4 O -0.583 6.583 5 C -0.141 4.141 6 C -0.110 4.110 7 C 0.063 3.937 8 N -0.700 5.700 9 C 0.108 3.892 10 C -0.047 4.047 11 C -0.152 4.152 12 C -0.078 4.078 13 C -0.223 4.223 14 C 0.104 3.896 15 O -0.343 6.343 16 C 0.085 3.915 17 C 0.028 3.972 18 C -0.549 4.549 19 H 0.071 0.929 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.978 3.022 23 H -0.264 1.264 24 H -0.282 1.282 25 H -0.263 1.263 26 C -0.153 4.153 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.387 0.613 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.346 0.654 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.126 0.874 43 H 0.060 0.940 44 H 0.059 0.941 45 H -0.003 1.003 46 H -0.002 1.002 47 H 0.267 0.733 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.418 -16.991 -13.351 32.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.039 3.961 3 H 0.102 0.898 4 O -0.391 6.391 5 C -0.179 4.179 6 C -0.148 4.148 7 C -0.066 4.066 8 N -0.332 5.332 9 C -0.021 4.021 10 C -0.047 4.047 11 C -0.171 4.171 12 C -0.095 4.095 13 C -0.242 4.242 14 C 0.059 3.941 15 O -0.258 6.258 16 C 0.011 3.989 17 C -0.009 4.009 18 C -0.587 4.587 19 H 0.089 0.911 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.801 3.199 23 H -0.189 1.189 24 H -0.207 1.207 25 H -0.188 1.188 26 C -0.173 4.173 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.236 0.764 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.164 0.836 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.144 0.856 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.076 0.924 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.250 -15.469 -12.948 31.544 hybrid contribution 0.828 -0.686 0.245 1.102 sum -23.422 -16.155 -12.703 31.160 Atomic orbital electron populations 1.22459 0.95401 1.03213 1.02808 1.21947 0.93471 0.96308 0.84327 0.89756 1.86578 1.77654 1.30253 1.44621 1.22206 0.95093 1.01926 0.98721 1.21439 0.95594 1.00658 0.97114 1.21998 0.86684 0.98966 0.98953 1.60413 1.06204 1.61374 1.05231 1.20806 0.88821 0.97861 0.94582 1.19710 0.96112 0.93059 0.95837 1.21216 0.93304 1.00381 1.02191 1.21231 0.95517 0.96284 0.96517 1.21507 1.00455 0.97557 1.04673 1.19539 0.93516 0.87693 0.93333 1.86084 1.23972 1.43799 1.71914 1.22849 0.75933 0.99872 1.00254 1.18965 0.95733 0.91740 0.94490 1.21375 0.91406 1.09588 1.36293 0.91075 1.26062 1.04641 0.94739 0.94259 1.70123 1.38148 1.12526 1.36155 0.85314 0.77816 0.77921 0.78871 1.18854 1.20720 1.18767 1.20408 0.90943 1.00717 1.05194 0.90905 0.92489 0.91238 0.76430 0.90318 0.90332 0.92866 0.92002 0.93986 0.91240 0.83579 0.92017 0.90362 0.83079 0.83035 0.85570 0.92176 0.92326 0.98445 0.98336 0.92432 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 9.53 71.98 0.69 -0.72 16 2 C 0.10 1.07 3.59 30.59 0.11 1.18 16 3 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 4 O -0.58 -7.75 12.88 -148.98 -1.92 -9.67 16 5 C -0.14 -1.29 4.89 30.60 0.15 -1.14 16 6 C -0.11 -1.47 5.37 30.60 0.16 -1.31 16 7 C 0.06 0.85 5.69 86.31 0.49 1.34 16 8 N -0.70 -12.56 6.49 -517.93 -3.36 -15.92 16 9 C 0.11 1.95 5.81 85.56 0.50 2.45 16 10 C -0.05 -1.12 5.39 -19.88 -0.11 -1.23 16 11 C -0.15 -3.19 9.70 22.28 0.22 -2.97 16 12 C -0.08 -1.84 10.04 22.25 0.22 -1.61 16 13 C -0.22 -7.00 9.04 22.36 0.20 -6.79 16 14 C 0.10 3.85 6.69 22.50 0.15 4.00 16 15 O -0.34 -15.33 10.14 -92.43 -0.94 -16.27 16 16 C 0.09 3.88 4.68 71.98 0.34 4.22 16 17 C 0.03 1.57 5.34 29.85 0.16 1.73 16 18 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 19 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 20 C 0.00 0.09 5.46 84.65 0.46 0.56 16 21 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 22 Si 0.98 43.93 29.54 68.60 2.03 45.96 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 26 C -0.15 -4.89 9.64 22.37 0.22 -4.67 16 27 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.39 2.19 9.04 -74.06 -0.67 1.52 16 31 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.90 7.82 -2.39 -0.02 0.88 16 35 H 0.04 0.45 8.14 -2.39 -0.02 0.44 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.35 5.78 8.72 -89.69 -0.78 5.00 16 38 H 0.06 0.85 8.08 -2.38 -0.02 0.83 16 39 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.13 3.93 6.30 -2.91 -0.02 3.92 16 43 H 0.06 2.56 7.67 -2.39 -0.02 2.55 16 44 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 45 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 46 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 47 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -70.85 396.78 -0.24 -71.08 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.52 Total: 18.24 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.19 Total: -36.31 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -3.08 Total: -73.03 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -2.86 Total: -25.94 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -70.85 -0.24 -71.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433173251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.124 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds