Wall clock time and date at job start Tue Mar 31 2020 08:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46958 * 2 1 4 4 O 1.42903 * 109.47026 * 120.00027 * 2 1 3 5 5 C 1.52997 * 109.47005 * 239.99853 * 2 1 3 6 6 C 1.53006 * 109.46909 * 174.99928 * 5 2 1 7 7 C 1.53006 * 109.46923 * 180.02562 * 6 5 2 8 8 N 1.46900 * 109.47078 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00195 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47382 * 179.97438 * 9 8 7 11 11 C 1.38284 * 119.97210 * 269.97968 * 10 9 8 12 12 C 1.38250 * 120.10839 * 180.02562 * 11 10 9 13 13 C 1.38161 * 120.05581 * 359.68103 * 12 11 10 14 14 C 1.38710 * 119.94432 * 0.61525 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.67631 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46838 * 89.99826 * 22 20 18 24 24 H 1.48497 * 109.47419 * 209.99978 * 22 20 18 25 25 H 1.48499 * 109.47011 * 330.00539 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 8 27 27 H 1.09001 * 109.47104 * 300.00362 * 1 2 3 28 28 H 1.09000 * 109.46817 * 60.00211 * 1 2 3 29 29 H 1.08996 * 109.46934 * 180.02562 * 1 2 3 30 30 H 0.96694 * 113.99912 * 299.99447 * 4 2 1 31 31 H 1.09004 * 109.47014 * 55.00385 * 5 2 1 32 32 H 1.08995 * 109.47429 * 295.00030 * 5 2 1 33 33 H 1.08997 * 109.47216 * 60.00654 * 6 5 2 34 34 H 1.08996 * 109.47320 * 299.99741 * 6 5 2 35 35 H 1.08996 * 109.47046 * 59.99725 * 7 6 5 36 36 H 1.09006 * 109.46798 * 299.99994 * 7 6 5 37 37 H 1.00901 * 111.00271 * 303.95429 * 8 7 6 38 38 H 1.09005 * 109.46944 * 59.99947 * 9 8 7 39 39 H 1.09002 * 109.47398 * 300.00389 * 9 8 7 40 40 H 1.07994 * 119.94418 * 0.02562 * 11 10 9 41 41 H 1.08002 * 119.97138 * 179.97438 * 12 11 10 42 42 H 1.08006 * 120.02996 * 180.29325 * 13 12 11 43 43 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 44 44 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 45 45 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 46 46 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 47 47 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5649 -0.6133 -1.3136 7 6 4.0748 -1.3340 -2.5633 8 7 5.5389 -1.2309 -2.6248 9 6 6.0652 -1.9137 -3.8142 10 6 7.5665 -1.7863 -3.8435 11 6 8.1563 -0.7121 -4.4841 12 6 9.5333 -0.5927 -4.5132 13 6 10.3235 -1.5434 -3.8962 14 6 9.7345 -2.6251 -3.2582 15 8 10.5097 -3.5651 -2.6563 16 6 11.9250 -3.3793 -2.7243 17 6 12.6257 -4.5280 -1.9960 18 6 14.1182 -4.3318 -2.0672 19 1 14.5261 -3.4735 -2.5802 20 6 14.9629 -5.2475 -1.4765 21 7 14.4660 -6.2925 -0.8513 22 14 16.8129 -5.0048 -1.5653 23 1 17.2641 -4.2073 -0.3967 24 1 17.4870 -6.3278 -1.5518 25 1 17.1582 -4.2860 -2.8180 26 6 8.3523 -2.7429 -3.2307 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7211 -0.2701 1.9979 31 1 1.6054 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9995 -1.0728 -0.4260 34 1 3.8532 0.4369 -1.3574 35 1 3.6401 -0.8742 -3.4507 36 1 3.7864 -2.3844 -2.5200 37 1 5.8348 -0.2666 -2.6005 38 1 5.6447 -1.4579 -4.7107 39 1 5.7902 -2.9679 -3.7795 40 1 7.5402 0.0348 -4.9625 41 1 9.9916 0.2470 -5.0145 42 1 11.3991 -1.4472 -3.9150 43 1 12.2398 -3.3645 -3.7678 44 1 12.1905 -2.4339 -2.2512 45 1 12.3109 -4.5424 -0.9525 46 1 12.3603 -5.4736 -2.4686 47 1 15.0603 -6.9366 -0.4354 48 1 7.8911 -3.5820 -2.7312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433173252.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:38 Heat of formation + Delta-G solvation = -94.673448 kcal Electronic energy + Delta-G solvation = -23591.025037 eV Core-core repulsion = 20030.914630 eV Total energy + Delta-G solvation = -3560.110407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78603 -38.38634 -37.62666 -36.25385 -33.69698 -33.32736 -31.58526 -30.79904 -29.97219 -29.08148 -26.58133 -25.06766 -24.13310 -22.33007 -21.86177 -21.62725 -21.24030 -20.09352 -17.89207 -17.58309 -16.36286 -16.13026 -15.63191 -15.45788 -15.42068 -15.30901 -15.18639 -14.52904 -14.45754 -14.31375 -13.73436 -13.63890 -13.07638 -12.89868 -12.70061 -12.62664 -12.40658 -12.28809 -12.08846 -11.93851 -11.64336 -11.43189 -11.36367 -11.21157 -10.98342 -10.88192 -10.80522 -10.66647 -10.40760 -10.36740 -9.83105 -9.63453 -9.27699 -8.76235 -8.54705 -8.42704 -7.80817 -6.08218 -4.12877 1.47858 1.70867 3.28900 3.34705 3.37594 3.75451 3.85697 3.88192 4.15861 4.42643 4.45459 4.55263 4.68602 4.76003 4.89286 4.94758 5.02632 5.13218 5.20100 5.20730 5.28093 5.30225 5.34347 5.41892 5.46970 5.47436 5.50648 5.59188 5.69403 5.74074 5.88680 5.94804 6.06584 6.09483 6.11849 6.22596 6.57619 6.60506 6.70709 6.76025 6.79181 7.02902 7.18881 7.27682 7.53677 7.67043 7.83996 8.10150 8.26283 8.92704 9.51293 11.03326 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.001840 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.394587 B =15212.584168 C =16250.640353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.100 3.900 3 H 0.054 0.946 4 O -0.564 6.564 5 C -0.112 4.112 6 C -0.116 4.116 7 C 0.059 3.941 8 N -0.684 5.684 9 C 0.103 3.897 10 C -0.052 4.052 11 C -0.167 4.167 12 C -0.081 4.081 13 C -0.211 4.211 14 C 0.145 3.855 15 O -0.315 6.315 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.138 4.138 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.376 0.624 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.342 0.658 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.129 0.871 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.263 0.737 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.748 15.244 -3.801 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.041 3.959 3 H 0.072 0.928 4 O -0.370 6.370 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.070 4.070 8 N -0.315 5.315 9 C -0.026 4.026 10 C -0.052 4.052 11 C -0.186 4.186 12 C -0.099 4.099 13 C -0.230 4.230 14 C 0.098 3.902 15 O -0.228 6.228 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.157 4.157 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.223 0.777 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.147 0.853 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -26.371 13.955 -3.640 30.057 hybrid contribution 0.682 1.288 -0.406 1.513 sum -25.689 15.243 -4.046 30.144 Atomic orbital electron populations 1.22533 0.96696 1.02882 1.02371 1.21806 0.92418 0.95298 0.86376 0.92845 1.86579 1.77005 1.57524 1.15856 1.21580 0.96149 1.01649 0.95602 1.21519 0.94469 1.00372 0.98979 1.21999 0.87400 1.01045 0.96596 1.60441 1.09563 1.20622 1.40852 1.20833 0.90598 1.00143 0.90982 1.19389 0.94330 0.94433 0.97075 1.20758 0.94757 0.98980 1.04102 1.20835 0.93438 0.97919 0.97718 1.21389 1.00885 0.96646 1.04082 1.19205 0.91245 0.88414 0.91370 1.86179 1.20658 1.45198 1.70777 1.23322 0.74937 1.02041 1.00573 1.19126 0.93891 0.92074 0.96144 1.20976 0.90371 1.09187 1.35974 0.92378 1.24992 0.99208 0.94986 0.95004 1.69982 1.35243 1.12128 1.35350 0.86485 0.84807 0.77545 0.78523 1.20503 1.21052 1.19784 1.20272 0.90372 1.01427 1.03675 0.92423 0.91642 0.91733 0.77722 0.90883 0.90991 0.90009 0.92387 0.95589 0.90915 0.84001 0.94439 0.90049 0.86857 0.86262 0.85279 0.93176 0.93155 0.95355 0.95381 0.92719 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.88 9.53 37.16 0.35 -0.53 16 2 C 0.10 0.62 3.58 -26.73 -0.10 0.52 16 3 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 4 O -0.56 -4.36 12.86 -35.23 -0.45 -4.81 16 5 C -0.11 -0.74 4.92 -26.73 -0.13 -0.87 16 6 C -0.12 -0.93 5.37 -26.72 -0.14 -1.07 16 7 C 0.06 0.49 5.69 -3.82 -0.02 0.47 16 8 N -0.68 -7.03 6.49 -115.06 -0.75 -7.78 16 9 C 0.10 1.08 5.81 -4.98 -0.03 1.06 16 10 C -0.05 -0.68 5.39 -104.65 -0.56 -1.24 16 11 C -0.17 -2.06 9.70 -39.56 -0.38 -2.44 16 12 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 13 C -0.21 -3.40 9.04 -39.44 -0.36 -3.75 16 14 C 0.14 2.62 6.69 -39.22 -0.26 2.36 16 15 O -0.32 -6.72 10.14 -19.43 -0.20 -6.91 16 16 C 0.07 1.44 4.68 37.16 0.17 1.61 16 17 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 18 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 22 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.14 -2.21 9.64 -39.43 -0.38 -2.59 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.38 1.42 9.08 45.56 0.41 1.83 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.85 7.82 -51.93 -0.41 0.45 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.34 3.29 8.72 -39.29 -0.34 2.95 16 38 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 39 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.11 1.11 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.13 2.04 6.30 -52.48 -0.33 1.71 16 43 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 44 H 0.05 1.05 7.65 -51.93 -0.40 0.66 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -32.03 396.82 -10.26 -42.29 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.76 Total: 1.80 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -2.80 Total: -21.01 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: -0.01 Total: -33.75 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.65 Total: -11.73 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.03 -10.26 -42.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433173252.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.385 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds