Wall clock time and date at job start Tue Mar 31 2020 08:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46958 * 2 1 4 4 O 1.42903 * 109.47026 * 120.00027 * 2 1 3 5 5 C 1.52997 * 109.47005 * 239.99853 * 2 1 3 6 6 C 1.53006 * 109.46909 * 174.99928 * 5 2 1 7 7 C 1.53006 * 109.46923 * 180.02562 * 6 5 2 8 8 N 1.46900 * 109.47078 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00195 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47382 * 179.97438 * 9 8 7 11 11 C 1.38284 * 119.97210 * 269.97968 * 10 9 8 12 12 C 1.38250 * 120.10839 * 180.02562 * 11 10 9 13 13 C 1.38161 * 120.05581 * 359.68103 * 12 11 10 14 14 C 1.38710 * 119.94432 * 0.61525 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.67631 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46838 * 89.99826 * 22 20 18 24 24 H 1.48497 * 109.47419 * 209.99978 * 22 20 18 25 25 H 1.48499 * 109.47011 * 330.00539 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 8 27 27 H 1.09001 * 109.47104 * 300.00362 * 1 2 3 28 28 H 1.09000 * 109.46817 * 60.00211 * 1 2 3 29 29 H 1.08996 * 109.46934 * 180.02562 * 1 2 3 30 30 H 0.96694 * 113.99912 * 299.99447 * 4 2 1 31 31 H 1.09004 * 109.47014 * 55.00385 * 5 2 1 32 32 H 1.08995 * 109.47429 * 295.00030 * 5 2 1 33 33 H 1.08997 * 109.47216 * 60.00654 * 6 5 2 34 34 H 1.08996 * 109.47320 * 299.99741 * 6 5 2 35 35 H 1.08996 * 109.47046 * 59.99725 * 7 6 5 36 36 H 1.09006 * 109.46798 * 299.99994 * 7 6 5 37 37 H 1.00901 * 111.00271 * 303.95429 * 8 7 6 38 38 H 1.09005 * 109.46944 * 59.99947 * 9 8 7 39 39 H 1.09002 * 109.47398 * 300.00389 * 9 8 7 40 40 H 1.07994 * 119.94418 * 0.02562 * 11 10 9 41 41 H 1.08002 * 119.97138 * 179.97438 * 12 11 10 42 42 H 1.08006 * 120.02996 * 180.29325 * 13 12 11 43 43 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 44 44 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 45 45 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 46 46 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 47 47 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 48 48 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5649 -0.6133 -1.3136 7 6 4.0748 -1.3340 -2.5633 8 7 5.5389 -1.2309 -2.6248 9 6 6.0652 -1.9137 -3.8142 10 6 7.5665 -1.7863 -3.8435 11 6 8.1563 -0.7121 -4.4841 12 6 9.5333 -0.5927 -4.5132 13 6 10.3235 -1.5434 -3.8962 14 6 9.7345 -2.6251 -3.2582 15 8 10.5097 -3.5651 -2.6563 16 6 11.9250 -3.3793 -2.7243 17 6 12.6257 -4.5280 -1.9960 18 6 14.1182 -4.3318 -2.0672 19 1 14.5261 -3.4735 -2.5802 20 6 14.9629 -5.2475 -1.4765 21 7 14.4660 -6.2925 -0.8513 22 14 16.8129 -5.0048 -1.5653 23 1 17.2641 -4.2073 -0.3967 24 1 17.4870 -6.3278 -1.5518 25 1 17.1582 -4.2860 -2.8180 26 6 8.3523 -2.7429 -3.2307 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7211 -0.2701 1.9979 31 1 1.6054 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9995 -1.0728 -0.4260 34 1 3.8532 0.4369 -1.3574 35 1 3.6401 -0.8742 -3.4507 36 1 3.7864 -2.3844 -2.5200 37 1 5.8348 -0.2666 -2.6005 38 1 5.6447 -1.4579 -4.7107 39 1 5.7902 -2.9679 -3.7795 40 1 7.5402 0.0348 -4.9625 41 1 9.9916 0.2470 -5.0145 42 1 11.3991 -1.4472 -3.9150 43 1 12.2398 -3.3645 -3.7678 44 1 12.1905 -2.4339 -2.2512 45 1 12.3109 -4.5424 -0.9525 46 1 12.3603 -5.4736 -2.4686 47 1 15.0603 -6.9366 -0.4354 48 1 7.8911 -3.5820 -2.7312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433173252.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:37 Heat of formation + Delta-G solvation = -116.248466 kcal Electronic energy + Delta-G solvation = -23591.960600 eV Core-core repulsion = 20030.914630 eV Total energy + Delta-G solvation = -3561.045970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08007 -39.09130 -38.70093 -37.12794 -35.47906 -34.36744 -32.59649 -32.35955 -30.89933 -30.37293 -27.43569 -26.86386 -25.06002 -23.53666 -23.25711 -22.49848 -21.87292 -21.43950 -19.10795 -18.40265 -18.14689 -17.18214 -16.94721 -16.89329 -16.64303 -16.39949 -16.06456 -15.85108 -15.22068 -14.93721 -14.76278 -14.54269 -14.33671 -14.24496 -14.13759 -13.72415 -13.40511 -13.14615 -13.04161 -12.92157 -12.78665 -12.63510 -12.55375 -12.45757 -12.35731 -12.26510 -11.85120 -11.61195 -11.59339 -11.56479 -11.40110 -11.31264 -10.85881 -10.62722 -9.83388 -9.35210 -9.08400 -8.27027 -6.41239 0.34585 0.53548 1.40602 1.43274 1.54432 2.27185 2.51327 2.75350 3.07206 3.33788 3.45482 3.83352 3.89351 3.93406 4.07431 4.13104 4.19774 4.22820 4.25749 4.27058 4.32780 4.42660 4.50339 4.55501 4.61594 4.65624 4.72413 4.74616 4.83189 4.84908 4.89121 4.99862 5.10719 5.11147 5.27405 5.30708 5.38393 5.43817 5.45389 5.46181 5.52238 5.61038 5.68218 5.89957 6.06040 6.09177 6.47013 6.57812 6.73477 6.93592 7.28988 8.86157 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.001840 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.394587 B =15212.584168 C =16250.640353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.095 3.905 3 H 0.061 0.939 4 O -0.590 6.590 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.063 3.937 8 N -0.700 5.700 9 C 0.107 3.893 10 C -0.046 4.046 11 C -0.152 4.152 12 C -0.077 4.077 13 C -0.223 4.223 14 C 0.104 3.896 15 O -0.344 6.344 16 C 0.085 3.915 17 C 0.027 3.973 18 C -0.548 4.548 19 H 0.071 0.929 20 C 0.001 3.999 21 N -0.931 5.931 22 Si 0.978 3.022 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.154 4.154 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.390 0.610 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.347 0.653 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.127 0.873 43 H 0.060 0.940 44 H 0.059 0.941 45 H -0.003 1.003 46 H -0.002 1.002 47 H 0.267 0.733 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.463 18.198 -5.591 33.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.037 3.963 3 H 0.079 0.921 4 O -0.398 6.398 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.066 4.066 8 N -0.332 5.332 9 C -0.021 4.021 10 C -0.047 4.047 11 C -0.170 4.170 12 C -0.095 4.095 13 C -0.242 4.242 14 C 0.059 3.941 15 O -0.258 6.258 16 C 0.011 3.989 17 C -0.010 4.010 18 C -0.585 4.585 19 H 0.090 0.910 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.182 1.182 26 C -0.174 4.174 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.239 0.761 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.166 0.834 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.145 0.855 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.076 0.924 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -27.118 16.935 -5.432 32.430 hybrid contribution 0.733 0.423 0.140 0.858 sum -26.385 17.358 -5.292 32.023 Atomic orbital electron populations 1.22481 0.95504 1.02580 1.03421 1.21917 0.93372 0.95363 0.85672 0.92066 1.86542 1.77620 1.58515 1.17145 1.21604 0.95124 1.01300 0.96861 1.21429 0.95367 1.00371 0.97497 1.21985 0.86349 1.00812 0.97461 1.60387 1.10836 1.21026 1.40990 1.20807 0.88756 1.00341 0.92193 1.19703 0.95611 0.93635 0.95745 1.21218 0.94793 0.98724 1.02269 1.21235 0.93848 0.97792 0.96619 1.21508 1.01220 0.96846 1.04586 1.19535 0.91712 0.89236 0.93597 1.86087 1.20080 1.47208 1.72451 1.22850 0.75757 0.99978 1.00315 1.18973 0.94620 0.92790 0.94598 1.21403 0.91096 1.09800 1.36241 0.91046 1.26071 1.05046 0.94403 0.94232 1.70132 1.37429 1.13199 1.36241 0.85253 0.77618 0.77751 0.79238 1.19528 1.20605 1.18249 1.20408 0.89913 1.02351 1.04688 0.91478 0.90515 0.92670 0.76079 0.88865 0.92163 0.93047 0.91615 0.93564 0.91771 0.83448 0.91846 0.90588 0.82962 0.82949 0.85535 0.92164 0.92283 0.98466 0.98355 0.92437 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.53 71.98 0.69 -0.76 16 2 C 0.10 1.07 3.58 30.59 0.11 1.18 16 3 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 4 O -0.59 -9.00 12.86 -148.98 -1.92 -10.91 16 5 C -0.11 -1.33 4.92 30.60 0.15 -1.18 16 6 C -0.11 -1.64 5.37 30.60 0.16 -1.48 16 7 C 0.06 0.95 5.69 86.31 0.49 1.44 16 8 N -0.70 -13.22 6.49 -517.93 -3.36 -16.58 16 9 C 0.11 2.03 5.81 85.56 0.50 2.53 16 10 C -0.05 -1.14 5.39 -19.88 -0.11 -1.24 16 11 C -0.15 -3.18 9.70 22.28 0.22 -2.97 16 12 C -0.08 -1.83 10.04 22.25 0.22 -1.60 16 13 C -0.22 -7.02 9.04 22.36 0.20 -6.82 16 14 C 0.10 3.89 6.69 22.50 0.15 4.04 16 15 O -0.34 -15.52 10.14 -92.43 -0.94 -16.45 16 16 C 0.09 3.91 4.68 71.98 0.34 4.24 16 17 C 0.03 1.55 5.34 29.85 0.16 1.71 16 18 C -0.55 -31.61 9.11 25.60 0.23 -31.38 16 19 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 20 C 0.00 0.06 5.46 84.65 0.46 0.52 16 21 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 22 Si 0.98 44.09 29.54 68.60 2.03 46.12 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 26 C -0.15 -5.02 9.64 22.37 0.22 -4.81 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.39 2.82 9.08 -74.06 -0.67 2.15 16 31 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.09 7.82 -2.39 -0.02 1.07 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.35 5.85 8.72 -89.69 -0.78 5.06 16 38 H 0.06 0.90 8.08 -2.38 -0.02 0.88 16 39 H 0.08 1.52 8.09 -2.39 -0.02 1.51 16 40 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.13 3.96 6.30 -2.91 -0.02 3.94 16 43 H 0.06 2.58 7.67 -2.39 -0.02 2.57 16 44 H 0.06 2.55 7.65 -2.39 -0.02 2.53 16 45 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -72.26 396.82 -0.23 -72.49 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.52 Total: 19.28 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 4.19 Total: -36.58 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -3.08 Total: -73.94 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -2.85 Total: -27.37 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -72.26 -0.23 -72.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433173252.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.754 kcal (2) G-P(sol) polarization free energy of solvation -72.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds