Wall clock time and date at job start Tue Mar 31 2020 09:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47249 * 2 1 4 4 N 1.46894 * 109.47195 * 174.72032 * 3 2 1 5 5 C 1.46906 * 110.99907 * 292.58318 * 4 3 2 6 6 C 1.52995 * 109.47050 * 287.91613 * 5 4 3 7 7 N 1.46906 * 109.46762 * 174.08412 * 6 5 4 8 8 C 1.46843 * 111.00111 * 45.79579 * 7 6 5 9 9 C 1.53033 * 109.52419 * 185.83796 * 8 7 6 10 10 C 1.53115 * 109.27831 * 300.81895 * 9 8 7 11 11 C 1.53122 * 109.16238 * 57.65505 * 10 9 8 12 12 C 1.46849 * 110.99718 * 170.00211 * 7 6 5 13 13 C 1.46901 * 111.00084 * 56.53757 * 4 3 2 14 14 C 1.53003 * 109.46747 * 74.50923 * 13 4 3 15 15 H 1.09000 * 109.47440 * 51.72249 * 14 13 4 16 16 C 1.47194 * 109.47138 * 291.72152 * 14 13 4 17 17 N 3.44432 * 90.86704 * 297.80905 * 2 1 3 18 18 C 1.53002 * 109.46626 * 171.72013 * 14 13 4 19 19 C 1.50703 * 109.46820 * 184.99671 * 18 14 13 20 20 H 1.07998 * 119.99949 * 0.02562 * 19 18 14 21 21 C 1.37875 * 119.99963 * 179.97438 * 19 18 14 22 22 N 1.31518 * 119.99876 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00098 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47193 * 60.00206 * 23 21 19 25 25 H 1.48498 * 109.47313 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47171 * 300.00134 * 23 21 19 27 27 H 1.09001 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47322 * 300.00190 * 1 2 3 29 29 H 1.09003 * 109.46953 * 60.00172 * 1 2 3 30 30 H 1.09002 * 109.47322 * 239.99810 * 2 1 3 31 31 H 1.09003 * 109.46953 * 119.99828 * 2 1 3 32 32 H 1.09006 * 109.47095 * 54.71935 * 3 2 1 33 33 H 1.09004 * 109.47080 * 294.72131 * 3 2 1 34 34 H 1.09005 * 109.46596 * 167.91799 * 5 4 3 35 35 H 1.08993 * 109.46789 * 47.92111 * 5 4 3 36 36 H 1.09002 * 109.47374 * 54.08869 * 6 5 4 37 37 H 1.08994 * 109.47419 * 294.08221 * 6 5 4 38 38 H 1.08995 * 109.46400 * 65.81917 * 8 7 6 39 39 H 1.09005 * 109.45919 * 305.85532 * 8 7 6 40 40 H 1.09001 * 109.50389 * 180.87330 * 9 8 7 41 41 H 1.09011 * 109.50236 * 60.75905 * 9 8 7 42 42 H 1.09007 * 109.52182 * 177.55724 * 10 9 8 43 43 H 1.09001 * 109.52417 * 297.74736 * 10 9 8 44 44 H 1.08994 * 109.50252 * 62.28409 * 11 10 9 45 45 H 1.09003 * 109.50186 * 182.40753 * 11 10 9 46 46 H 1.09000 * 109.46292 * 54.14472 * 12 7 6 47 47 H 1.08999 * 109.46218 * 294.17676 * 12 7 6 48 48 H 1.08998 * 109.46973 * 194.50836 * 13 4 3 49 49 H 1.08993 * 109.47011 * 314.50627 * 13 4 3 50 50 H 1.08994 * 109.47567 * 304.99965 * 18 14 13 51 51 H 1.09002 * 109.46895 * 65.00089 * 18 14 13 52 52 H 0.97003 * 119.99433 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5034 1.4444 0.1274 5 6 3.9173 0.9575 1.4502 6 6 3.5914 2.0143 2.5075 7 7 3.8737 1.4732 3.8438 8 6 5.1759 0.7950 3.8727 9 6 5.3714 0.1210 5.2326 10 6 5.3019 1.1799 6.3363 11 6 3.9554 1.9043 6.2538 12 6 3.8010 2.5267 4.8642 13 6 4.1261 0.6542 -0.9430 14 6 4.0619 1.4354 -2.2569 15 1 4.4646 2.4368 -2.1044 16 6 2.6623 1.5321 -2.7024 17 7 1.5821 1.6067 -3.0462 18 6 4.8873 0.7106 -3.3220 19 6 4.9254 1.5409 -4.5791 20 1 4.4126 2.4907 -4.6146 21 6 5.6158 1.0884 -5.6834 22 7 6.2406 -0.0680 -5.6399 23 14 5.6636 2.1179 -7.2414 24 1 6.2832 3.4348 -6.9458 25 1 6.4646 1.4145 -8.2752 26 1 4.2806 2.3228 -7.7420 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6015 1.9829 0.8390 33 1 1.7559 1.9283 -0.9335 34 1 4.9903 0.7653 1.4472 35 1 3.3837 0.0356 1.6813 36 1 2.5373 2.2831 2.4397 37 1 4.2039 2.8996 2.3372 38 1 5.9692 1.5250 3.7117 39 1 5.2106 0.0418 3.0855 40 1 6.3447 -0.3692 5.2592 41 1 4.5863 -0.6190 5.3882 42 1 5.3974 0.6984 7.3096 43 1 6.1108 1.8983 6.2034 44 1 3.1481 1.1924 6.4255 45 1 3.9171 2.6884 7.0100 46 1 2.8371 3.0311 4.7974 47 1 4.6007 3.2485 4.6986 48 1 5.1673 0.4553 -0.6890 49 1 3.5928 -0.2897 -1.0550 50 1 5.9025 0.5603 -2.9549 51 1 4.4324 -0.2560 -3.5386 52 1 6.7260 -0.3864 -6.4171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411725497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:50 Heat of formation + Delta-G solvation = 17.813039 kcal Electronic energy + Delta-G solvation = -26091.939440 eV Core-core repulsion = 22704.832659 eV Total energy + Delta-G solvation = -3387.106781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.232 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.61340 -38.58451 -35.92582 -34.06468 -33.92996 -32.63122 -31.52018 -31.06147 -28.54509 -26.82239 -25.67878 -24.17220 -23.33511 -22.77344 -22.06465 -21.33262 -19.97712 -19.50021 -16.94419 -16.55812 -16.32261 -15.96450 -15.48647 -14.95104 -14.72387 -14.65372 -14.42523 -14.22887 -13.88518 -13.61891 -13.39417 -13.14003 -13.11501 -12.61846 -12.49702 -12.34102 -12.15309 -12.02033 -11.84996 -11.54214 -11.46942 -11.40433 -11.35565 -11.14804 -11.00681 -10.96761 -10.83684 -10.71317 -10.60603 -10.54635 -10.40329 -10.27926 -10.05700 -9.47753 -9.23374 -8.45779 -8.44430 -8.08629 -6.08859 -4.11856 3.31614 3.35733 3.39361 3.54583 3.64442 3.68789 4.20034 4.42206 4.56395 4.59255 4.67947 4.79846 4.87534 4.97659 5.08335 5.09647 5.15133 5.21379 5.26205 5.29138 5.37654 5.39811 5.42472 5.47628 5.53275 5.60903 5.66044 5.67951 5.69358 5.73642 5.83456 5.85851 5.89533 5.93259 5.96728 6.01928 6.11324 6.12893 6.17667 6.23770 6.42782 6.45234 6.58139 6.87866 6.92917 7.21192 7.23442 7.44167 7.54538 7.86255 8.24289 8.44449 8.92493 9.53467 11.02006 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.002902 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.376771 B = 9645.074738 C =10606.538874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.161 4.161 3 C 0.037 3.963 4 N -0.536 5.536 5 C 0.049 3.951 6 C 0.061 3.939 7 N -0.538 5.538 8 C 0.048 3.952 9 C -0.117 4.117 10 C -0.122 4.122 11 C -0.116 4.116 12 C 0.057 3.943 13 C 0.058 3.942 14 C 0.009 3.991 15 H 0.109 0.891 16 C 0.251 3.749 17 N -0.479 5.479 18 C 0.033 3.967 19 C -0.526 4.526 20 H 0.056 0.944 21 C 0.063 3.937 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.032 0.968 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.038 0.962 51 H 0.023 0.977 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 1.104 23.723 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.200 4.200 3 C -0.092 4.092 4 N -0.259 5.259 5 C -0.080 4.080 6 C -0.067 4.067 7 N -0.264 5.264 8 C -0.080 4.080 9 C -0.155 4.155 10 C -0.160 4.160 11 C -0.154 4.154 12 C -0.072 4.072 13 C -0.071 4.071 14 C -0.013 4.013 15 H 0.127 0.873 16 C -0.064 4.064 17 N -0.157 5.157 18 C -0.005 4.005 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.531 5.531 23 Si 0.719 3.281 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.108 0.892 49 H 0.066 0.934 50 H 0.057 0.943 51 H 0.042 0.958 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.155 1.251 23.150 23.554 hybrid contribution 0.837 0.268 -1.001 1.332 sum -3.318 1.519 22.149 22.448 Atomic orbital electron populations 1.21636 0.95541 1.01337 1.01734 1.22125 0.96747 0.99126 1.02026 1.22610 0.87257 0.95784 1.03504 1.62225 1.07700 1.53939 1.02027 1.22260 1.00579 0.96564 0.88548 1.22064 1.01543 0.96453 0.86633 1.61995 1.30895 1.28937 1.04550 1.22208 0.89569 0.98130 0.98116 1.21595 1.01732 0.98089 0.94112 1.21583 0.97421 0.98182 0.98766 1.21579 0.97982 0.99952 0.95906 1.22057 1.00921 0.92482 0.91693 1.22342 1.00121 0.94864 0.89771 1.19306 0.84146 1.03092 0.94766 0.87323 1.29123 0.94535 0.91997 0.90791 1.81033 1.13664 1.10003 1.10975 1.19152 0.94583 0.95536 0.91267 1.21107 1.32665 1.05314 0.97308 0.92576 1.24947 0.95207 0.95022 0.98764 1.69931 1.33442 1.19240 1.30462 0.86661 0.78176 0.80441 0.82843 1.20025 1.21203 1.20272 0.93109 0.93074 0.92395 0.91544 0.91918 0.91073 0.89412 0.90677 0.93371 0.90635 0.94013 0.94823 0.90074 0.91634 0.91199 0.92003 0.92352 0.91174 0.91761 0.90910 0.94930 0.89231 0.93358 0.94341 0.95817 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.16 -2.14 5.14 -26.73 -0.14 -2.28 16 3 C 0.04 0.50 4.68 -3.83 -0.02 0.49 16 4 N -0.54 -7.17 4.60 -234.63 -1.08 -8.25 16 5 C 0.05 0.55 3.86 -3.82 -0.01 0.53 16 6 C 0.06 0.64 5.42 -3.82 -0.02 0.62 16 7 N -0.54 -5.25 4.81 -234.67 -1.13 -6.38 16 8 C 0.05 0.43 4.86 -3.84 -0.02 0.41 16 9 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 10 C -0.12 -0.87 6.00 -26.61 -0.16 -1.03 16 11 C -0.12 -0.86 6.09 -26.65 -0.16 -1.02 16 12 C 0.06 0.49 5.42 -3.83 -0.02 0.47 16 13 C 0.06 0.86 4.46 -3.82 -0.02 0.84 16 14 C 0.01 0.17 2.40 -93.41 -0.22 -0.06 16 15 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 16 C 0.25 5.07 10.65 -20.76 -0.22 4.84 16 17 N -0.48 -10.25 17.65 42.16 0.74 -9.50 16 18 C 0.03 0.77 4.42 -27.88 -0.12 0.64 16 19 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 20 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 23 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.01 6.11 -51.93 -0.32 0.69 16 31 H 0.06 0.78 6.19 -51.93 -0.32 0.45 16 32 H 0.07 0.90 6.38 -51.93 -0.33 0.57 16 33 H 0.09 1.42 4.42 -51.93 -0.23 1.20 16 34 H 0.07 0.81 6.16 -51.93 -0.32 0.49 16 35 H 0.05 0.56 6.02 -51.93 -0.31 0.25 16 36 H 0.08 0.83 6.46 -51.93 -0.34 0.49 16 37 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.74 5.94 -51.93 -0.31 0.43 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 42 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 47 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.09 1.23 7.65 -51.93 -0.40 0.83 16 49 H 0.05 0.74 5.61 -51.93 -0.29 0.45 16 50 H 0.04 0.90 8.13 -51.93 -0.42 0.48 16 51 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -28.61 391.70 -10.63 -39.24 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -9.46 Total: -1.82 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -1.32 Total: -10.73 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.73 Total: -48.94 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.61 -10.63 -39.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411725497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.049 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds