Wall clock time and date at job start Tue Mar 31 2020 08:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48497 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46862 * 299.99536 * 3 2 1 6 6 H 1.48494 * 109.47461 * 59.99202 * 3 2 1 7 7 C 1.37874 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47139 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99852 * 179.97438 * 11 10 9 13 13 O 1.21626 * 120.00291 * 0.02562 * 12 11 10 14 14 C 1.47288 * 119.99774 * 179.97438 * 12 11 10 15 15 C 1.35129 * 122.41935 * 180.02562 * 14 12 11 16 16 S 1.71002 * 109.17052 * 179.97438 * 15 14 12 17 17 C 1.75995 * 90.59866 * 0.02562 * 16 15 14 18 18 C 1.47166 * 125.32502 * 180.02562 * 17 16 15 19 19 C 1.35086 * 125.28390 * 359.74445 * 18 17 16 20 20 C 1.37786 * 114.67715 * 179.83502 * 19 18 17 21 21 C 1.33728 * 115.09880 * 0.45303 * 20 19 18 22 22 S 1.75867 * 109.77618 * 359.75713 * 21 20 19 23 23 N 1.30108 * 109.34498 * 0.26261 * 17 16 15 24 24 H 0.97003 * 120.00065 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46661 * 59.99928 * 9 7 2 26 26 H 1.08998 * 109.46654 * 300.00163 * 9 7 2 27 27 H 1.09001 * 109.47317 * 60.00423 * 10 9 7 28 28 H 1.09004 * 109.47239 * 300.00371 * 10 9 7 29 29 H 0.97003 * 119.99736 * 0.02562 * 11 10 9 30 30 H 1.08002 * 125.41276 * 359.97438 * 15 14 12 31 31 H 1.07994 * 122.66084 * 359.97438 * 19 18 17 32 32 H 1.08004 * 122.44891 * 180.21533 * 20 19 18 33 33 H 1.08002 * 125.11557 * 179.75366 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1868 -6.0979 0.0007 13 8 3.4030 -6.0979 0.0003 14 6 1.4504 -7.3735 0.0019 15 6 2.0760 -8.5712 0.0021 16 16 0.9044 -9.8168 0.0043 17 6 -0.3901 -8.6244 0.0041 18 6 -1.8294 -8.9311 0.0061 19 6 -2.3629 -10.1721 0.0035 20 6 -3.7403 -10.2063 0.0098 21 6 -4.3374 -9.0097 0.0079 22 16 -3.1222 -7.7383 0.0047 23 7 0.1246 -7.4295 -0.0032 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6044 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.5428 -4.9308 0.0011 30 1 3.1460 -8.7184 0.0010 31 1 -1.7577 -11.0666 -0.0009 32 1 -4.2970 -11.1318 0.0120 33 1 -5.4053 -8.8483 0.0083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273077708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:09 Heat of formation + Delta-G solvation = 31.787476 kcal Electronic energy + Delta-G solvation = -18969.186777 eV Core-core repulsion = 15827.140675 eV Total energy + Delta-G solvation = -3142.046102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 308.039 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38103 -38.54037 -37.84834 -34.90647 -32.82287 -32.03940 -29.72983 -29.16125 -26.23686 -25.03543 -23.81283 -21.98788 -20.85796 -20.32452 -19.41114 -18.37534 -17.51527 -16.51827 -16.36084 -15.81243 -15.47282 -15.07698 -14.53754 -14.42169 -14.32299 -13.50126 -13.36123 -13.32188 -13.06465 -12.79139 -12.48836 -12.31070 -12.08343 -11.18410 -11.03947 -11.03803 -10.61902 -10.33892 -10.24819 -10.19569 -9.97551 -9.61484 -9.52405 -9.21481 -8.79684 -8.58325 -8.42588 -8.29588 -6.06688 -4.09611 -0.17994 0.63505 0.87473 1.27404 1.55397 1.80139 1.94426 2.53823 3.30036 3.37262 3.41696 3.46421 3.56364 3.82559 4.43881 4.63386 4.73114 4.99206 5.09139 5.12784 5.17253 5.30216 5.53200 5.74232 5.90293 6.01339 6.34057 6.34939 6.73628 6.87545 7.19010 7.55461 7.64783 7.91238 8.01702 8.28991 8.56739 8.96411 9.54973 11.04917 Molecular weight = 308.04amu Principal moments of inertia in cm(-1) A = 0.016312 B = 0.003140 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.147403 B = 8914.824878 C =10610.523715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.699 5.699 12 C 0.580 3.420 13 O -0.544 6.544 14 C 0.026 3.974 15 C -0.218 4.218 16 S 0.188 5.812 17 C 0.115 3.885 18 C -0.134 4.134 19 C -0.111 4.111 20 C -0.138 4.138 21 C -0.217 4.217 22 S 0.206 5.794 23 N -0.433 5.433 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.407 0.593 30 H 0.194 0.806 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 -25.042 0.020 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.348 5.348 12 C 0.362 3.638 13 O -0.423 6.423 14 C -0.110 4.110 15 C -0.360 4.360 16 S 0.445 5.555 17 C -0.162 4.162 18 C -0.256 4.256 19 C -0.147 4.147 20 C -0.168 4.168 21 C -0.355 4.355 22 S 0.471 5.529 23 N -0.148 5.148 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.242 0.758 30 H 0.211 0.789 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.670 -23.856 0.010 25.059 hybrid contribution 0.476 0.195 0.001 0.514 sum -7.194 -23.661 0.011 24.731 Atomic orbital electron populations 1.69974 1.06071 1.26728 1.50394 1.25000 0.94893 0.99395 0.95026 0.86459 0.80154 0.83365 0.77597 1.19595 1.20941 1.20945 1.21080 0.93262 0.90322 1.51275 0.92171 1.19336 0.94195 0.90970 0.98054 1.21827 0.96159 0.81193 1.01006 1.46212 1.11299 1.05918 1.71377 1.17135 0.86469 0.82438 0.77724 1.90787 1.12641 1.87140 1.51739 1.20352 0.87929 0.95708 1.07041 1.26559 1.06881 0.95525 1.07023 1.83653 0.95754 1.10088 1.66017 1.24674 0.95539 0.90611 1.05359 1.21869 0.92233 0.97772 1.13690 1.20300 0.95334 0.96155 1.02906 1.19946 0.93485 0.98744 1.04626 1.26116 1.04016 0.96605 1.08795 1.84894 0.92939 1.06665 1.68401 1.67180 1.10359 1.22943 1.14316 0.92908 0.95806 0.95796 0.92245 0.92237 0.75790 0.78934 0.83987 0.83751 0.81285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.67 5.61 -4.04 -0.02 2.65 16 11 N -0.70 -13.72 5.55 -61.43 -0.34 -14.07 16 12 C 0.58 11.02 7.79 -12.58 -0.10 10.92 16 13 O -0.54 -11.62 16.65 5.25 0.09 -11.53 16 14 C 0.03 0.41 6.64 -84.92 -0.56 -0.16 16 15 C -0.22 -2.72 10.56 29.63 0.31 -2.40 16 16 S 0.19 1.77 22.75 -107.50 -2.45 -0.68 16 17 C 0.11 1.40 7.44 -14.66 -0.11 1.29 16 18 C -0.13 -1.43 6.42 -37.08 -0.24 -1.67 16 19 C -0.11 -0.90 9.87 -40.87 -0.40 -1.30 16 20 C -0.14 -0.96 10.16 -41.33 -0.42 -1.38 16 21 C -0.22 -1.61 11.23 29.15 0.33 -1.28 16 22 S 0.21 2.11 23.29 -107.50 -2.50 -0.39 16 23 N -0.43 -6.47 10.06 -8.27 -0.08 -6.55 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.41 7.56 7.95 -40.82 -0.32 7.23 16 30 H 0.19 2.16 7.99 -52.49 -0.42 1.74 16 31 H 0.14 0.85 7.89 -52.49 -0.41 0.43 16 32 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 33 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -32.58 326.39 -9.66 -42.24 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -3.24 Total: 1.77 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.77 Total: -6.60 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.31 Total: -46.34 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -4.95 Total: -1.07 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.58 -9.66 -42.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273077708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.023 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds