Wall clock time and date at job start Tue Mar 31 2020 08:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31480 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48503 * 109.47523 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47330 * 300.00165 * 3 2 1 6 6 H 1.48507 * 109.47295 * 59.99767 * 3 2 1 7 7 C 1.38884 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00061 * 180.02562 * 7 2 1 9 9 N 1.37044 * 119.99770 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99746 * 179.97438 * 9 7 2 11 11 S 1.71203 * 120.00021 * 0.02562 * 10 9 7 12 12 N 1.34776 * 119.99926 * 180.02562 * 10 9 7 13 13 C 1.39967 * 119.99937 * 185.53933 * 12 10 9 14 14 C 1.38891 * 120.04855 * 221.86574 * 13 12 10 15 15 C 1.38087 * 119.95530 * 180.02562 * 14 13 12 16 16 C 1.38498 * 120.04560 * 359.97438 * 15 14 13 17 17 F 1.35097 * 119.95192 * 180.27497 * 16 15 14 18 18 C 1.38451 * 120.09783 * 0.02562 * 16 15 14 19 19 C 1.50698 * 119.97938 * 180.02562 * 18 16 15 20 20 F 1.39904 * 109.46979 * 180.02562 * 19 18 16 21 21 F 1.39894 * 109.46953 * 299.99887 * 19 18 16 22 22 F 1.39901 * 109.47066 * 60.00152 * 19 18 16 23 23 C 1.38137 * 120.04214 * 359.97438 * 18 16 15 24 24 H 0.96999 * 119.99545 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00066 * 0.02562 * 9 7 2 26 26 H 0.96993 * 119.99999 * 5.53805 * 12 10 9 27 27 H 1.07999 * 120.02358 * 0.02562 * 14 13 12 28 28 H 1.07995 * 119.97687 * 179.97438 * 15 14 13 29 29 H 1.08008 * 120.02223 * 179.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7088 1.3464 -0.0006 5 1 1.8901 2.3965 -1.2125 6 1 1.8900 2.3965 1.2125 7 6 2.0092 -1.2028 -0.0005 8 1 3.0892 -1.2028 -0.0001 9 7 1.3240 -2.3896 -0.0005 10 6 1.9979 -3.5568 -0.0016 11 16 3.7099 -3.5568 -0.0022 12 7 1.3240 -4.7240 -0.0021 13 6 2.0190 -5.9334 0.1138 14 6 1.6575 -7.0212 -0.6704 15 6 2.3441 -8.2136 -0.5541 16 6 3.3930 -8.3251 0.3435 17 9 4.0670 -9.4909 0.4517 18 6 3.7550 -7.2421 1.1263 19 6 4.8971 -7.3662 2.1016 20 9 5.0717 -6.1509 2.7723 21 9 4.6106 -8.3733 3.0293 22 9 6.0688 -7.6897 1.4090 23 6 3.0708 -6.0474 1.0130 24 1 -0.4849 0.8401 -0.0004 25 1 0.3540 -2.3896 -0.0005 26 1 0.3574 -4.7259 -0.0828 27 1 0.8400 -6.9345 -1.3708 28 1 2.0631 -9.0598 -1.1635 29 1 3.3533 -5.2028 1.6242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245065310.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:49 Heat of formation + Delta-G solvation = -155.061104 kcal Electronic energy + Delta-G solvation = -22672.208482 eV Core-core repulsion = 18413.990101 eV Total energy + Delta-G solvation = -4258.218381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 308.030 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.90773 -48.83049 -47.35211 -47.30173 -39.66852 -37.62389 -35.04265 -32.48104 -31.84923 -29.03575 -26.09036 -25.62854 -23.41234 -22.04339 -21.89840 -19.34195 -18.51574 -18.22589 -18.18349 -17.58191 -17.16791 -16.08606 -15.93385 -15.53540 -15.25116 -14.51525 -14.24723 -14.19929 -14.08002 -14.05585 -13.74798 -13.58127 -13.46761 -13.36800 -12.99080 -12.90702 -12.32090 -12.19444 -12.06220 -11.46824 -11.12057 -11.05486 -10.62145 -10.30625 -10.09589 -9.25880 -9.18653 -8.12395 -7.29780 -6.81823 -6.10731 -4.54667 0.93421 1.29161 2.30528 2.87027 2.92986 2.98969 3.00331 3.15074 3.55643 3.62679 3.79301 3.93925 4.16750 4.38373 4.54882 4.68131 4.75177 4.87822 5.13426 5.38454 5.57637 5.81931 6.06672 6.19070 6.41512 6.66400 6.78535 6.95257 7.23765 7.74429 8.03967 8.54122 8.68730 9.82351 Molecular weight = 308.03amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.004028 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.316092 B = 6949.177462 C = 7690.100562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.036 3.964 3 Si 0.952 3.048 4 H -0.252 1.252 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.278 4.278 8 H 0.151 0.849 9 N -0.446 5.446 10 C 0.410 3.590 11 S -0.733 6.733 12 N -0.660 5.660 13 C 0.170 3.830 14 C -0.093 4.093 15 C -0.149 4.149 16 C 0.123 3.877 17 F -0.134 7.134 18 C -0.217 4.217 19 C 0.516 3.484 20 F -0.167 7.167 21 F -0.181 7.181 22 F -0.176 7.176 23 C -0.003 4.003 24 H 0.289 0.711 25 H 0.395 0.605 26 H 0.397 0.603 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 -10.760 1.069 11.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.175 4.175 3 Si 0.776 3.224 4 H -0.175 1.175 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.414 4.414 8 H 0.168 0.832 9 N -0.044 5.044 10 C 0.051 3.949 11 S -0.599 6.599 12 N -0.291 5.291 13 C 0.073 3.927 14 C -0.116 4.116 15 C -0.169 4.169 16 C 0.102 3.898 17 F -0.113 7.113 18 C -0.223 4.223 19 C 0.461 3.539 20 F -0.148 7.148 21 F -0.162 7.162 22 F -0.157 7.157 23 C -0.028 4.028 24 H 0.100 0.900 25 H 0.231 0.769 26 H 0.233 0.767 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.966 -10.287 1.082 10.389 hybrid contribution -1.379 0.608 -0.054 1.509 sum -2.345 -9.679 1.028 10.012 Atomic orbital electron populations 1.69660 1.06821 1.30789 1.41641 1.25897 0.95860 1.01729 0.94054 0.85403 0.80564 0.78014 0.78469 1.17536 1.19762 1.19722 1.21068 0.96161 0.79809 1.44371 0.83163 1.41131 1.09249 1.04074 1.49955 1.20911 0.94204 0.80330 0.99462 1.92558 0.92554 1.92619 1.82159 1.41397 1.08216 1.02153 1.77338 1.17096 0.95407 0.84983 0.95213 1.20874 1.01176 0.92189 0.97347 1.20656 0.96515 0.99312 1.00431 1.17153 0.93520 0.80867 0.98226 1.91509 1.78912 1.45734 1.95136 1.19719 1.02257 0.96394 1.03881 1.17991 0.82215 0.73799 0.79852 1.93218 1.95739 1.44405 1.81487 1.93189 1.93491 1.61523 1.68006 1.93209 1.50754 1.92595 1.79171 1.21369 0.91654 0.94528 0.95281 0.90034 0.76865 0.76681 0.84534 0.83967 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -19.18 13.05 55.49 0.72 -18.46 15 2 C 0.04 0.80 5.50 -17.46 -0.10 0.70 15 3 Si 0.95 17.91 29.55 -169.99 -5.02 12.88 15 4 H -0.25 -4.88 7.11 56.52 0.40 -4.48 15 5 H -0.27 -5.04 7.11 56.52 0.40 -4.63 15 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 7 C -0.28 -6.59 9.50 -14.98 -0.14 -6.74 15 8 H 0.15 3.86 6.22 -52.49 -0.33 3.53 15 9 N -0.45 -9.62 5.29 -12.53 -0.07 -9.69 15 10 C 0.41 8.72 7.71 -86.91 -0.67 8.05 15 11 S -0.73 -18.35 24.44 -107.50 -2.63 -20.98 15 12 N -0.66 -10.94 5.33 -11.39 -0.06 -11.01 15 13 C 0.17 2.75 5.91 -83.68 -0.49 2.25 15 14 C -0.09 -1.19 9.97 -39.40 -0.39 -1.58 15 15 C -0.15 -1.84 10.02 -39.54 -0.40 -2.24 15 16 C 0.12 1.83 7.13 -39.41 -0.28 1.55 15 17 F -0.13 -1.99 16.45 2.25 0.04 -1.96 15 18 C -0.22 -3.60 5.37 -104.58 -0.56 -4.16 15 19 C 0.52 8.62 3.02 36.00 0.11 8.73 15 20 F -0.17 -2.97 15.97 2.25 0.04 -2.94 15 21 F -0.18 -2.83 17.05 2.25 0.04 -2.79 15 22 F -0.18 -3.02 17.04 2.25 0.04 -2.98 15 23 C 0.00 -0.05 7.24 -39.39 -0.29 -0.34 15 24 H 0.29 6.02 8.31 -40.82 -0.34 5.68 15 25 H 0.40 7.88 7.92 -40.82 -0.32 7.55 15 26 H 0.40 5.16 8.84 -40.82 -0.36 4.80 15 27 H 0.14 1.34 8.06 -52.49 -0.42 0.92 15 28 H 0.14 1.32 8.06 -52.49 -0.42 0.90 15 29 H 0.17 3.47 5.36 -49.90 -0.27 3.20 15 LS Contribution 289.65 15.07 4.36 4.36 Total: -1.00 -27.46 289.65 -7.01 -34.47 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -1.26 Total: 12.85 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -3.21 Total: 6.23 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.60 Total: -39.15 kcal Atomic # 9 Polarization: -10.82 SS G_CDS: 0.15 Total: -10.67 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.02 Total: 12.88 kcal Atomic # 16 Polarization: -18.35 SS G_CDS: -2.63 Total: -20.98 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.46 -7.01 -34.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245065310.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.589 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds