Wall clock time and date at job start Tue Mar 31 2020 09:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00051 * 2 1 4 4 H 1.48497 * 109.47189 * 240.00713 * 3 2 1 5 5 H 1.48498 * 109.46797 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47112 * 120.00523 * 3 2 1 7 7 C 1.37875 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47071 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.47002 * 180.02562 * 10 9 7 12 12 C 1.81397 * 102.99991 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47181 * 179.97438 * 12 11 10 14 14 N 1.30974 * 126.43320 * 89.99964 * 13 12 11 15 15 C 1.35229 * 105.57846 * 180.02562 * 14 13 12 16 16 C 1.48380 * 126.41641 * 179.97438 * 15 14 13 17 17 C 1.39356 * 120.09478 * 359.72695 * 16 15 14 18 18 C 1.37959 * 119.90354 * 179.72406 * 17 16 15 19 19 C 1.38567 * 120.09384 * 0.57274 * 18 17 16 20 20 F 1.35102 * 119.90183 * 179.70133 * 19 18 17 21 21 C 1.38560 * 120.19172 * 359.68084 * 19 18 17 22 22 C 1.37963 * 120.09263 * 0.04096 * 21 19 18 23 23 N 1.30777 * 107.16511 * 0.02562 * 15 14 13 24 24 O 1.21289 * 110.09622 * 359.97438 * 23 15 14 25 25 H 0.96996 * 119.99699 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46635 * 60.00815 * 9 7 2 27 27 H 1.08996 * 109.47624 * 300.00486 * 9 7 2 28 28 H 1.08997 * 109.47215 * 60.00570 * 10 9 7 29 29 H 1.09006 * 109.47264 * 300.00113 * 10 9 7 30 30 H 1.09003 * 109.46987 * 59.99488 * 12 11 10 31 31 H 1.09004 * 109.47367 * 300.00187 * 12 11 10 32 32 H 1.07997 * 120.04892 * 0.02562 * 17 16 15 33 33 H 1.08000 * 119.95033 * 180.25899 * 18 17 16 34 34 H 1.08002 * 119.95588 * 180.02562 * 21 19 18 35 35 H 1.08003 * 120.04670 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1031 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2331 -0.0013 12 6 2.6649 -6.4702 -0.0020 13 6 2.0634 -7.8519 -0.0020 14 7 1.7525 -8.5649 -1.0558 15 6 1.2476 -9.7234 -0.5744 16 6 0.7484 -10.8673 -1.3767 17 6 0.7680 -10.8060 -2.7688 18 6 0.3081 -11.8742 -3.5109 19 6 -0.1839 -13.0022 -2.8739 20 9 -0.6389 -14.0436 -3.6045 21 6 -0.2101 -13.0653 -1.4900 22 6 0.2531 -12.0039 -0.7403 23 7 1.2809 -9.6461 0.7306 24 8 1.7460 -8.5796 1.0732 25 1 -0.4849 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 3.2812 -6.3426 0.8880 31 1 3.2811 -6.3418 -0.8919 32 1 1.1472 -9.9255 -3.2660 33 1 0.3268 -11.8292 -4.5898 34 1 -0.5940 -13.9465 -0.9975 35 1 0.2319 -12.0537 0.3384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190891051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:46 Heat of formation + Delta-G solvation = 38.486842 kcal Electronic energy + Delta-G solvation = -20522.175380 eV Core-core repulsion = 16950.039702 eV Total energy + Delta-G solvation = -3572.135678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.074 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.34981 -45.74335 -39.46916 -36.07501 -33.95215 -33.76997 -31.70519 -30.98308 -30.82069 -29.09196 -25.36482 -24.96163 -23.91122 -22.84590 -21.70718 -21.03649 -18.39929 -18.34762 -17.83046 -16.71266 -16.59395 -16.32902 -16.03154 -15.80671 -15.02303 -14.68083 -14.55797 -14.28565 -14.04876 -13.66293 -13.52411 -13.42491 -13.29716 -12.82743 -12.44687 -12.21570 -11.85869 -11.63630 -11.61550 -11.22006 -11.06408 -10.77898 -10.47860 -10.29426 -9.80730 -9.65543 -9.63193 -9.19703 -8.92195 -8.47933 -7.40472 -6.11847 -4.17301 0.18337 0.75088 0.78506 1.80774 2.27676 2.53175 2.92632 3.15435 3.22410 3.26990 3.32294 3.33973 3.63822 3.75704 4.27884 4.36844 4.38517 4.56154 4.75179 4.81325 4.96706 5.06863 5.23883 5.30289 5.41525 5.48020 5.60833 5.62270 5.81196 5.84430 5.93935 6.01387 6.32118 6.58057 7.47586 7.54608 7.82937 7.88953 8.18764 8.87270 9.47089 10.98785 Molecular weight = 308.07amu Principal moments of inertia in cm(-1) A = 0.033081 B = 0.002051 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.211710 B =13651.908887 C =14096.129000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.060 4.060 11 S -0.243 6.243 12 C -0.016 4.016 13 C 0.218 3.782 14 N -0.463 5.463 15 C 0.210 3.790 16 C -0.029 4.029 17 C -0.044 4.044 18 C -0.155 4.155 19 C 0.116 3.884 20 F -0.136 7.136 21 C -0.156 4.156 22 C -0.055 4.055 23 N -0.374 5.374 24 O 0.091 5.909 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 -24.533 -3.128 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.208 4.208 11 S -0.017 6.017 12 C -0.165 4.165 13 C -0.003 4.003 14 N -0.197 5.197 15 C -0.060 4.060 16 C -0.031 4.031 17 C -0.064 4.064 18 C -0.174 4.174 19 C 0.096 3.904 20 F -0.114 7.114 21 C -0.175 4.175 22 C -0.075 4.075 23 N -0.080 5.080 24 O 0.029 5.971 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.980 -25.372 -3.041 25.630 hybrid contribution 1.654 1.120 -0.050 1.998 sum 3.634 -24.252 -3.091 24.717 Atomic orbital electron populations 1.69958 1.06095 1.27126 1.49587 1.25019 0.94919 0.99371 0.94939 0.86556 0.79501 0.82658 0.78693 1.20108 1.21168 1.20113 1.21011 0.92989 0.90023 1.52297 0.92339 1.18922 0.93431 0.89045 0.98785 1.23858 1.01650 0.91389 1.03864 1.87472 1.13848 1.02251 1.98126 1.21729 1.00437 0.85789 1.08558 1.27686 0.95555 0.96567 0.80495 1.72004 1.16868 1.02604 1.28222 1.23752 1.00420 0.94254 0.87594 1.17364 1.02918 0.90689 0.92105 1.21132 0.95082 0.98314 0.91873 1.21134 1.02095 0.92667 1.01515 1.17903 0.97878 0.85195 0.89468 1.91527 1.86403 1.56089 1.77387 1.21058 1.03793 1.00732 0.91888 1.21044 0.94624 0.90933 1.00859 1.74869 1.16974 1.01296 1.14823 1.85303 1.56551 1.19781 1.35436 0.92624 0.95357 0.95359 0.90647 0.90666 0.86341 0.85637 0.83364 0.83738 0.83877 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.52 -13.94 9.11 -34.44 -0.31 -14.25 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.91 4.98 -27.88 -0.14 0.77 16 10 C -0.06 -1.11 5.88 37.16 0.22 -0.90 16 11 S -0.24 -4.06 21.72 -107.50 -2.33 -6.39 16 12 C -0.02 -0.19 6.57 36.00 0.24 0.05 16 13 C 0.22 2.85 7.76 -12.99 -0.10 2.74 16 14 N -0.46 -6.38 11.26 -9.89 -0.11 -6.49 16 15 C 0.21 2.76 7.80 -156.11 -1.22 1.54 16 16 C -0.03 -0.31 5.88 -104.89 -0.62 -0.93 16 17 C -0.04 -0.42 9.70 -39.27 -0.38 -0.80 16 18 C -0.16 -1.25 10.01 -39.56 -0.40 -1.65 16 19 C 0.12 0.98 7.30 -39.34 -0.29 0.70 16 20 F -0.14 -1.22 17.26 2.25 0.04 -1.18 16 21 C -0.16 -1.22 10.01 -39.56 -0.40 -1.62 16 22 C -0.05 -0.50 9.69 -39.27 -0.38 -0.88 16 23 N -0.37 -5.11 11.86 30.97 0.37 -4.74 16 24 O 0.09 1.22 11.29 18.06 0.20 1.43 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 30 H 0.12 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.13 1.28 8.14 -51.92 -0.42 0.85 16 32 H 0.15 1.34 7.87 -52.49 -0.41 0.93 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.14 1.18 7.87 -52.48 -0.41 0.77 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -30.13 334.43 -8.70 -38.83 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -3.75 Total: -3.39 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -3.87 Total: -13.67 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.99 Total: -36.39 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: 0.20 Total: 1.43 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -2.33 Total: -6.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.13 -8.70 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190891051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.320 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds