Wall clock time and date at job start Tue Mar 31 2020 09:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00051 * 2 1 4 4 H 1.48497 * 109.47189 * 240.00713 * 3 2 1 5 5 H 1.48498 * 109.46797 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47112 * 120.00523 * 3 2 1 7 7 C 1.37875 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47071 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.47002 * 180.02562 * 10 9 7 12 12 C 1.81397 * 102.99991 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47181 * 179.97438 * 12 11 10 14 14 N 1.30974 * 126.43320 * 89.99964 * 13 12 11 15 15 C 1.35229 * 105.57846 * 180.02562 * 14 13 12 16 16 C 1.48380 * 126.41641 * 179.97438 * 15 14 13 17 17 C 1.39356 * 120.09478 * 359.72695 * 16 15 14 18 18 C 1.37959 * 119.90354 * 179.72406 * 17 16 15 19 19 C 1.38567 * 120.09384 * 0.57274 * 18 17 16 20 20 F 1.35102 * 119.90183 * 179.70133 * 19 18 17 21 21 C 1.38560 * 120.19172 * 359.68084 * 19 18 17 22 22 C 1.37963 * 120.09263 * 0.04096 * 21 19 18 23 23 N 1.30777 * 107.16511 * 0.02562 * 15 14 13 24 24 O 1.21289 * 110.09622 * 359.97438 * 23 15 14 25 25 H 0.96996 * 119.99699 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46635 * 60.00815 * 9 7 2 27 27 H 1.08996 * 109.47624 * 300.00486 * 9 7 2 28 28 H 1.08997 * 109.47215 * 60.00570 * 10 9 7 29 29 H 1.09006 * 109.47264 * 300.00113 * 10 9 7 30 30 H 1.09003 * 109.46987 * 59.99488 * 12 11 10 31 31 H 1.09004 * 109.47367 * 300.00187 * 12 11 10 32 32 H 1.07997 * 120.04892 * 0.02562 * 17 16 15 33 33 H 1.08000 * 119.95033 * 180.25899 * 18 17 16 34 34 H 1.08002 * 119.95588 * 180.02562 * 21 19 18 35 35 H 1.08003 * 120.04670 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1031 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3383 -5.2331 -0.0013 12 6 2.6649 -6.4702 -0.0020 13 6 2.0634 -7.8519 -0.0020 14 7 1.7525 -8.5649 -1.0558 15 6 1.2476 -9.7234 -0.5744 16 6 0.7484 -10.8673 -1.3767 17 6 0.7680 -10.8060 -2.7688 18 6 0.3081 -11.8742 -3.5109 19 6 -0.1839 -13.0022 -2.8739 20 9 -0.6389 -14.0436 -3.6045 21 6 -0.2101 -13.0653 -1.4900 22 6 0.2531 -12.0039 -0.7403 23 7 1.2809 -9.6461 0.7306 24 8 1.7460 -8.5796 1.0732 25 1 -0.4849 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 3.2812 -6.3426 0.8880 31 1 3.2811 -6.3418 -0.8919 32 1 1.1472 -9.9255 -3.2660 33 1 0.3268 -11.8292 -4.5898 34 1 -0.5940 -13.9465 -0.9975 35 1 0.2319 -12.0537 0.3384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190891051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:46 Heat of formation + Delta-G solvation = 21.815240 kcal Electronic energy + Delta-G solvation = -20522.898315 eV Core-core repulsion = 16950.039702 eV Total energy + Delta-G solvation = -3572.858612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.074 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.03493 -46.75434 -40.17313 -37.06262 -35.74401 -34.90796 -32.88024 -32.37507 -31.60747 -30.08516 -27.28790 -25.86974 -24.74716 -23.66112 -23.19514 -22.22403 -19.42817 -19.18671 -18.64895 -18.61455 -17.50399 -17.19797 -17.01590 -16.70893 -16.49238 -16.01264 -15.65108 -15.34044 -15.03708 -14.70628 -14.66130 -14.32987 -14.10430 -13.98252 -13.65957 -13.52427 -13.35036 -12.86176 -12.81142 -12.49903 -12.43934 -12.11576 -12.05543 -11.74501 -11.66546 -11.11363 -10.86459 -10.56655 -10.28465 -9.69604 -8.73467 -8.20032 -6.33056 -0.64890 -0.25647 0.09839 0.76906 1.27228 1.45021 1.47586 1.51441 1.55452 1.65357 2.24812 2.43571 2.49376 2.70614 3.08212 3.14086 3.55358 3.69790 3.78077 3.97907 4.09452 4.16359 4.26675 4.34256 4.40612 4.45721 4.60435 4.77093 4.82127 4.92537 4.95315 5.06307 5.22909 5.43337 5.53521 5.66138 5.77524 6.13417 6.82264 6.88610 7.36649 8.91440 Molecular weight = 308.07amu Principal moments of inertia in cm(-1) A = 0.033081 B = 0.002051 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.211710 B =13651.908887 C =14096.129000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.040 3.960 10 C -0.045 4.045 11 S -0.286 6.286 12 C 0.004 3.996 13 C 0.216 3.784 14 N -0.476 5.476 15 C 0.208 3.792 16 C -0.053 4.053 17 C -0.048 4.048 18 C -0.150 4.150 19 C 0.112 3.888 20 F -0.137 7.137 21 C -0.149 4.149 22 C -0.056 4.056 23 N -0.387 5.387 24 O 0.085 5.915 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.003 1.003 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 -25.503 -3.476 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.092 0.908 9 C 0.002 3.998 10 C -0.192 4.192 11 S -0.060 6.060 12 C -0.145 4.145 13 C -0.005 4.005 14 N -0.210 5.210 15 C -0.062 4.062 16 C -0.055 4.055 17 C -0.068 4.068 18 C -0.169 4.169 19 C 0.092 3.908 20 F -0.116 7.116 21 C -0.168 4.168 22 C -0.076 4.076 23 N -0.094 5.094 24 O 0.026 5.974 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.015 0.985 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.183 0.817 34 H 0.185 0.815 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.716 -26.338 -3.382 26.813 hybrid contribution 1.076 1.245 0.020 1.646 sum 4.792 -25.093 -3.362 25.767 Atomic orbital electron populations 1.70113 1.08016 1.28022 1.51140 1.26028 0.95739 1.03584 0.94572 0.85417 0.78115 0.77631 0.79379 1.18900 1.21378 1.18859 1.21528 0.93922 0.91060 1.51229 0.90847 1.18700 0.93909 0.91509 0.95707 1.23455 1.00046 0.90344 1.05396 1.87568 1.16841 1.03281 1.98354 1.21807 0.98320 0.82905 1.11423 1.27885 0.95399 0.96893 0.80356 1.72007 1.17250 1.03078 1.28703 1.24176 0.99755 0.94603 0.87644 1.17572 1.04474 0.90808 0.92664 1.21171 0.95355 0.98820 0.91433 1.21326 1.01053 0.91942 1.02554 1.18055 0.97763 0.85215 0.89803 1.91528 1.86413 1.56161 1.77459 1.21279 1.02764 1.01004 0.91707 1.21126 0.94495 0.90738 1.01232 1.74853 1.17737 1.01607 1.15205 1.85282 1.56694 1.19885 1.35585 0.92714 0.98607 0.98458 0.88906 0.89204 0.83027 0.83367 0.83359 0.81656 0.81539 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 42.34 29.54 68.60 2.03 44.36 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.54 -28.70 9.11 25.60 0.23 -28.47 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.04 2.03 4.98 29.85 0.15 2.18 16 10 C -0.04 -1.62 5.88 71.98 0.42 -1.20 16 11 S -0.29 -9.40 21.72 -56.49 -1.23 -10.62 16 12 C 0.00 0.08 6.57 71.23 0.47 0.55 16 13 C 0.22 5.35 7.76 88.36 0.69 6.03 16 14 N -0.48 -12.71 11.26 -302.51 -3.41 -16.11 16 15 C 0.21 5.37 7.80 137.28 1.07 6.44 16 16 C -0.05 -1.12 5.88 -20.04 -0.12 -1.24 16 17 C -0.05 -0.86 9.70 22.47 0.22 -0.64 16 18 C -0.15 -2.18 10.01 22.28 0.22 -1.95 16 19 C 0.11 1.69 7.30 22.43 0.16 1.86 16 20 F -0.14 -2.20 17.26 44.97 0.78 -1.42 16 21 C -0.15 -2.07 10.01 22.28 0.22 -1.84 16 22 C -0.06 -0.96 9.69 22.47 0.22 -0.74 16 23 N -0.39 -10.38 11.86 -59.12 -0.70 -11.08 16 24 O 0.09 2.23 11.29 74.68 0.84 3.07 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.15 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.15 2.59 7.87 -2.91 -0.02 2.56 16 33 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.15 2.31 7.87 -2.91 -0.02 2.29 16 Total: -1.00 -66.49 334.43 4.13 -62.35 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.12 Total: 3.54 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 4.42 Total: -18.61 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -3.82 Total: -82.68 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.84 Total: 3.07 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.78 Total: -1.42 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: -9.40 SS G_CDS: -1.23 Total: -10.62 kcal Total: -66.49 4.13 -62.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190891051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.167 kcal (2) G-P(sol) polarization free energy of solvation -66.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds