Wall clock time and date at job start Tue Mar 31 2020 09:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 115.55177 * 2 1 4 4 O 1.45202 * 109.46886 * 325.58518 * 3 2 1 5 5 C 1.34229 * 117.00108 * 179.97438 * 4 3 2 6 6 O 1.20827 * 119.99705 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00486 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47476 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47086 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.46714 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46611 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00153 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99965 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47198 * 90.00141 * 15 13 11 17 17 H 1.48502 * 109.47057 * 210.00582 * 15 13 11 18 18 H 1.48502 * 109.46762 * 329.99867 * 15 13 11 19 19 C 1.53001 * 117.50064 * 214.29512 * 2 1 3 20 20 C 1.52994 * 117.50137 * 145.67315 * 2 1 3 21 21 Cl 1.80301 * 117.49904 * 214.98024 * 20 2 1 22 22 Cl 1.80301 * 117.49835 * 359.97438 * 20 2 1 23 23 H 1.09002 * 109.47153 * 274.32690 * 1 2 3 24 24 H 1.09001 * 109.46832 * 154.32881 * 1 2 3 25 25 H 1.09004 * 109.47261 * 34.32862 * 1 2 3 26 26 H 1.08999 * 109.46923 * 85.57965 * 3 2 1 27 27 H 1.08997 * 109.47612 * 205.58182 * 3 2 1 28 28 H 1.09005 * 109.46663 * 299.99956 * 7 5 4 29 29 H 1.09005 * 109.47110 * 59.99525 * 7 5 4 30 30 H 1.08996 * 109.47418 * 299.99855 * 8 7 5 31 31 H 1.09002 * 109.46756 * 59.99745 * 8 7 5 32 32 H 1.08996 * 109.47119 * 300.00339 * 9 8 7 33 33 H 1.08995 * 109.46900 * 60.00442 * 9 8 7 34 34 H 1.08992 * 109.47047 * 299.99995 * 10 9 8 35 35 H 1.08995 * 109.47148 * 60.00505 * 10 9 8 36 36 H 0.97002 * 120.00274 * 179.97438 * 14 13 11 37 37 H 1.08997 * 117.49845 * 359.97438 * 19 2 1 38 38 H 1.08999 * 117.50024 * 145.02000 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3797 2.3041 -0.7737 5 6 1.8225 3.5674 -0.8727 6 8 2.8527 3.8908 -0.3304 7 6 1.0342 4.5828 -1.6593 8 6 1.7521 5.9330 -1.6131 9 6 0.9520 6.9637 -2.4122 10 6 1.6704 8.3138 -2.3665 11 6 0.8820 9.3291 -3.1531 12 1 -0.0395 9.0404 -3.6368 13 6 1.3366 10.6269 -3.2543 14 7 2.4584 10.9786 -2.6648 15 14 0.3590 11.8856 -4.2287 16 1 -0.6138 12.5593 -3.3314 17 1 1.2847 12.8951 -4.8024 18 1 -0.3711 11.2029 -5.3270 19 6 2.2365 -1.1212 -0.7647 20 6 2.2365 -1.1207 0.7653 21 17 3.7832 -0.7138 1.5976 22 17 1.2023 -2.3400 1.5987 23 1 -0.3633 0.0775 1.0247 24 1 -0.3633 -0.9263 -0.4452 25 1 -0.3634 0.8487 -0.5796 26 1 2.2752 1.7423 1.0246 27 1 3.1829 1.3085 -0.4437 28 1 0.9470 4.2524 -2.6944 29 1 0.0394 4.6856 -1.2257 30 1 1.8390 6.2632 -0.5779 31 1 2.7470 5.8305 -2.0464 32 1 0.8655 6.6334 -3.4473 33 1 -0.0429 7.0663 -1.9792 34 1 1.7573 8.6443 -1.3315 35 1 2.6653 8.2109 -2.7997 36 1 2.7784 11.8915 -2.7363 37 1 1.6113 -1.8590 -1.2674 38 1 3.1715 -0.8755 -1.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837731108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:27 Heat of formation + Delta-G solvation = -102.425152 kcal Electronic energy + Delta-G solvation = -20046.023606 eV Core-core repulsion = 16554.468524 eV Total energy + Delta-G solvation = -3491.555082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 308.073 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66804 -39.10293 -36.82714 -36.53648 -35.96455 -35.00575 -32.70541 -30.17070 -29.26692 -27.77563 -25.68711 -23.04457 -22.70830 -20.63315 -20.06353 -19.96574 -17.64162 -17.16955 -16.81753 -16.19848 -15.84534 -15.34060 -14.99976 -14.44639 -14.18749 -13.80539 -13.64334 -13.27385 -12.85224 -12.71255 -12.46959 -12.29437 -12.01216 -11.93697 -11.73233 -11.68979 -11.67281 -11.32542 -11.13051 -11.02550 -10.63009 -10.60322 -10.50940 -10.48602 -10.44249 -10.20931 -9.67182 -9.30696 -9.03671 -8.32905 -5.97613 -4.00289 0.63237 1.60152 2.21706 2.27393 2.74599 3.32890 3.39080 3.42099 3.57327 3.66286 4.13534 4.37258 4.47248 4.76898 4.94633 4.96554 4.99925 5.15388 5.23182 5.24879 5.34820 5.37924 5.40838 5.68551 5.78644 6.02600 6.15574 6.31052 6.44253 6.74081 6.92213 7.14114 7.70617 7.73337 7.85323 8.03001 8.44581 9.07263 9.63605 11.13665 Molecular weight = 308.07amu Principal moments of inertia in cm(-1) A = 0.041594 B = 0.001960 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.019842 B =14282.767167 C =14732.268937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.088 4.088 3 C 0.099 3.901 4 O -0.355 6.355 5 C 0.460 3.540 6 O -0.502 6.502 7 C -0.110 4.110 8 C -0.109 4.109 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.134 4.134 20 C 0.005 3.995 21 Cl -0.088 7.088 22 Cl -0.086 7.086 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.126 0.874 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 -29.475 6.097 30.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.090 4.090 3 C 0.025 3.975 4 O -0.272 6.272 5 C 0.303 3.697 6 O -0.388 6.388 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.147 4.147 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.171 4.171 20 C -0.047 4.047 21 Cl -0.061 7.061 22 Cl -0.059 7.059 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.246 -29.322 6.447 30.107 hybrid contribution -0.154 0.549 -0.146 0.589 sum -2.399 -28.773 6.301 29.553 Atomic orbital electron populations 1.21431 0.88778 1.03905 1.03586 1.22258 0.97762 0.89851 0.99102 1.22383 0.93032 0.85158 0.96941 1.86476 1.52194 1.21220 1.67356 1.24272 0.84928 0.81497 0.78961 1.90695 1.24326 1.79573 1.44197 1.21622 1.00061 0.92711 1.00380 1.21588 0.99555 0.91267 1.02258 1.21649 0.98586 0.96492 0.98007 1.19100 0.95649 0.89749 0.97248 1.21268 1.07977 0.94586 1.32075 0.92686 1.25046 0.95098 0.98599 0.95859 1.69971 1.20993 1.18484 1.44001 0.86600 0.79847 0.81288 0.80287 1.20693 1.21263 1.19897 1.24281 1.03948 1.00043 0.88861 1.27026 0.87647 0.97703 0.92291 1.98775 1.32732 1.93344 1.81263 1.98754 1.68042 1.57921 1.81174 0.90999 0.91336 0.89259 0.89762 0.90099 0.87781 0.87778 0.91506 0.91523 0.93185 0.93181 0.96550 0.96540 0.93017 0.85544 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 8.79 37.16 0.33 -0.45 16 2 C -0.09 -0.64 2.59 -154.51 -0.40 -1.04 16 3 C 0.10 0.94 4.64 37.16 0.17 1.12 16 4 O -0.35 -3.86 8.79 -39.26 -0.34 -4.20 16 5 C 0.46 6.10 7.96 36.00 0.29 6.39 16 6 O -0.50 -8.31 15.73 -18.75 -0.29 -8.61 16 7 C -0.11 -1.37 5.81 -27.89 -0.16 -1.53 16 8 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 9 C -0.11 -2.16 5.15 -26.73 -0.14 -2.29 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 12 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 15 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.13 -0.75 9.51 -26.73 -0.25 -1.01 16 20 C 0.00 0.04 3.61 -26.74 -0.10 -0.06 16 21 Cl -0.09 -0.76 28.32 -51.86 -1.47 -2.23 16 22 Cl -0.09 -0.64 28.32 -51.86 -1.47 -2.11 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.36 7.90 -51.93 -0.41 -0.05 16 25 H 0.09 0.62 6.87 -51.93 -0.36 0.26 16 26 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 27 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.13 0.51 8.05 -51.93 -0.42 0.09 16 38 H 0.12 0.61 8.05 -51.93 -0.42 0.19 16 LS Contribution 353.54 15.07 5.33 5.33 Total: -1.00 -31.82 353.54 -9.25 -41.06 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -5.78 Total: -5.40 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.93 Total: -14.02 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.74 Total: -26.47 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.64 Total: -12.81 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -2.94 Total: -4.34 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.82 -9.25 -41.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837731108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.360 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds