Wall clock time and date at job start Tue Mar 31 2020 09:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 115.55177 * 2 1 4 4 O 1.45202 * 109.46886 * 325.58518 * 3 2 1 5 5 C 1.34229 * 117.00108 * 179.97438 * 4 3 2 6 6 O 1.20827 * 119.99705 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00486 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47476 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47086 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.46714 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46611 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99983 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99699 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00153 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99965 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47198 * 90.00141 * 15 13 11 17 17 H 1.48502 * 109.47057 * 210.00582 * 15 13 11 18 18 H 1.48502 * 109.46762 * 329.99867 * 15 13 11 19 19 C 1.53001 * 117.50064 * 214.29512 * 2 1 3 20 20 C 1.52994 * 117.50137 * 145.67315 * 2 1 3 21 21 Cl 1.80301 * 117.49904 * 214.98024 * 20 2 1 22 22 Cl 1.80301 * 117.49835 * 359.97438 * 20 2 1 23 23 H 1.09002 * 109.47153 * 274.32690 * 1 2 3 24 24 H 1.09001 * 109.46832 * 154.32881 * 1 2 3 25 25 H 1.09004 * 109.47261 * 34.32862 * 1 2 3 26 26 H 1.08999 * 109.46923 * 85.57965 * 3 2 1 27 27 H 1.08997 * 109.47612 * 205.58182 * 3 2 1 28 28 H 1.09005 * 109.46663 * 299.99956 * 7 5 4 29 29 H 1.09005 * 109.47110 * 59.99525 * 7 5 4 30 30 H 1.08996 * 109.47418 * 299.99855 * 8 7 5 31 31 H 1.09002 * 109.46756 * 59.99745 * 8 7 5 32 32 H 1.08996 * 109.47119 * 300.00339 * 9 8 7 33 33 H 1.08995 * 109.46900 * 60.00442 * 9 8 7 34 34 H 1.08992 * 109.47047 * 299.99995 * 10 9 8 35 35 H 1.08995 * 109.47148 * 60.00505 * 10 9 8 36 36 H 0.97002 * 120.00274 * 179.97438 * 14 13 11 37 37 H 1.08997 * 117.49845 * 359.97438 * 19 2 1 38 38 H 1.08999 * 117.50024 * 145.02000 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3797 2.3041 -0.7737 5 6 1.8225 3.5674 -0.8727 6 8 2.8527 3.8908 -0.3304 7 6 1.0342 4.5828 -1.6593 8 6 1.7521 5.9330 -1.6131 9 6 0.9520 6.9637 -2.4122 10 6 1.6704 8.3138 -2.3665 11 6 0.8820 9.3291 -3.1531 12 1 -0.0395 9.0404 -3.6368 13 6 1.3366 10.6269 -3.2543 14 7 2.4584 10.9786 -2.6648 15 14 0.3590 11.8856 -4.2287 16 1 -0.6138 12.5593 -3.3314 17 1 1.2847 12.8951 -4.8024 18 1 -0.3711 11.2029 -5.3270 19 6 2.2365 -1.1212 -0.7647 20 6 2.2365 -1.1207 0.7653 21 17 3.7832 -0.7138 1.5976 22 17 1.2023 -2.3400 1.5987 23 1 -0.3633 0.0775 1.0247 24 1 -0.3633 -0.9263 -0.4452 25 1 -0.3634 0.8487 -0.5796 26 1 2.2752 1.7423 1.0246 27 1 3.1829 1.3085 -0.4437 28 1 0.9470 4.2524 -2.6944 29 1 0.0394 4.6856 -1.2257 30 1 1.8390 6.2632 -0.5779 31 1 2.7470 5.8305 -2.0464 32 1 0.8655 6.6334 -3.4473 33 1 -0.0429 7.0663 -1.9792 34 1 1.7573 8.6443 -1.3315 35 1 2.6653 8.2109 -2.7997 36 1 2.7784 11.8915 -2.7363 37 1 1.6113 -1.8590 -1.2674 38 1 3.1715 -0.8755 -1.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837731108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:27 Heat of formation + Delta-G solvation = -118.134634 kcal Electronic energy + Delta-G solvation = -20046.704820 eV Core-core repulsion = 16554.468524 eV Total energy + Delta-G solvation = -3492.236296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 308.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65190 -39.76014 -37.74228 -37.13340 -36.72237 -36.53041 -34.64762 -31.75197 -29.92892 -28.67956 -27.30979 -24.48332 -23.45140 -22.05594 -21.44019 -20.59155 -18.67856 -18.36850 -17.89713 -17.78308 -16.71054 -16.43407 -16.23552 -15.99405 -15.06181 -14.61078 -14.49692 -14.45175 -14.07741 -13.83554 -13.58266 -13.36950 -13.31222 -12.99042 -12.82259 -12.60593 -12.50951 -12.34914 -12.30243 -12.17598 -12.16189 -11.99476 -11.91090 -11.63592 -11.36766 -11.28619 -11.12769 -11.04807 -10.79600 -10.53439 -8.17570 -6.29175 0.06130 1.00034 1.17750 1.41840 1.43693 1.48722 1.54785 2.11482 2.43112 2.97816 3.13910 3.15512 3.46739 3.75484 3.83869 4.01877 4.11485 4.21868 4.33313 4.55885 4.58309 4.66923 4.70201 4.81335 4.83774 4.88189 4.91483 5.16792 5.21251 5.31965 5.34989 5.43875 5.58597 5.79888 5.90077 6.26844 6.71383 6.89660 7.40427 8.94504 Molecular weight = 308.07amu Principal moments of inertia in cm(-1) A = 0.041594 B = 0.001960 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.019842 B =14282.767167 C =14732.268937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C 0.096 3.904 4 O -0.342 6.342 5 C 0.466 3.534 6 O -0.543 6.543 7 C -0.101 4.101 8 C -0.102 4.102 9 C -0.096 4.096 10 C 0.017 3.983 11 C -0.540 4.540 12 H 0.067 0.933 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 0.968 3.032 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.259 1.259 19 C -0.116 4.116 20 C -0.002 4.002 21 Cl -0.106 7.106 22 Cl -0.087 7.087 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.063 0.937 34 H -0.014 1.014 35 H -0.014 1.014 36 H 0.262 0.738 37 H 0.149 0.851 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -30.849 4.680 31.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C 0.022 3.978 4 O -0.259 6.259 5 C 0.311 3.689 6 O -0.432 6.432 7 C -0.138 4.138 8 C -0.140 4.140 9 C -0.133 4.133 10 C -0.020 4.020 11 C -0.578 4.578 12 H 0.085 0.915 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.792 3.208 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.183 1.183 19 C -0.153 4.153 20 C -0.053 4.053 21 Cl -0.079 7.079 22 Cl -0.060 7.060 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.071 0.929 37 H 0.167 0.833 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.384 -30.731 5.027 31.447 hybrid contribution 0.528 0.935 0.334 1.125 sum -3.856 -29.796 5.361 30.519 Atomic orbital electron populations 1.21444 0.87961 1.04598 1.03501 1.22222 0.98267 0.88737 1.00179 1.22478 0.93227 0.86002 0.96052 1.86459 1.51928 1.20368 1.67127 1.24377 0.84168 0.82230 0.78137 1.90695 1.26166 1.80339 1.46015 1.21503 1.00167 0.89853 1.02247 1.21363 0.98920 0.93259 1.00409 1.21437 0.98623 0.93681 0.99586 1.19067 0.94884 0.93244 0.94775 1.21764 1.08493 0.95396 1.32133 0.91503 1.26080 0.96183 1.01201 0.97010 1.70126 1.22943 1.19125 1.45633 0.85403 0.78238 0.78191 0.78942 1.19801 1.21092 1.18284 1.24469 1.04242 0.99012 0.87577 1.27170 0.87014 0.97923 0.93207 1.98774 1.33891 1.93499 1.81748 1.98754 1.67977 1.57835 1.81397 0.91355 0.89763 0.89573 0.90960 0.90296 0.84951 0.85076 0.93264 0.93162 0.91723 0.91781 0.99604 0.99526 0.92910 0.83317 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.79 71.98 0.63 -0.64 16 2 C -0.09 -1.19 2.59 -52.18 -0.14 -1.32 16 3 C 0.10 1.75 4.64 71.98 0.33 2.09 16 4 O -0.34 -6.85 8.79 -51.41 -0.45 -7.31 16 5 C 0.47 11.80 7.96 71.24 0.57 12.36 16 6 O -0.54 -18.14 15.73 21.96 0.35 -17.80 16 7 C -0.10 -2.26 5.81 29.85 0.17 -2.08 16 8 C -0.10 -3.36 4.50 30.59 0.14 -3.22 16 9 C -0.10 -3.68 5.15 30.60 0.16 -3.52 16 10 C 0.02 0.93 4.97 29.85 0.15 1.07 16 11 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 12 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 13 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 14 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16 15 Si 0.97 44.25 29.54 68.60 2.03 46.27 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 17 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 19 C -0.12 -1.02 9.51 30.59 0.29 -0.73 16 20 C 0.00 -0.02 3.61 30.59 0.11 0.09 16 21 Cl -0.11 -1.80 28.32 -2.72 -0.08 -1.87 16 22 Cl -0.09 -1.17 28.32 -2.72 -0.08 -1.24 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.08 0.64 7.90 -2.39 -0.02 0.62 16 25 H 0.09 0.99 6.87 -2.38 -0.02 0.98 16 26 H 0.07 1.49 8.13 -2.39 -0.02 1.48 16 27 H 0.08 1.47 7.89 -2.39 -0.02 1.45 16 28 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 31 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 34 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 36 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.15 0.68 8.05 -2.39 -0.02 0.66 16 38 H 0.13 0.99 8.05 -2.39 -0.02 0.97 16 Total: -1.00 -70.39 353.54 6.20 -64.18 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.04 Total: 2.08 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 3.11 Total: -26.30 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.28 Total: -58.02 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.11 Total: -25.10 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.15 Total: -3.12 kcal Total: -70.39 6.20 -64.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837731108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.951 kcal (2) G-P(sol) polarization free energy of solvation -70.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds