Wall clock time and date at job start Tue Mar 31 2020 09:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30617 * 1 3 3 Si 1.86795 * 119.99770 * 2 1 4 4 H 1.48502 * 109.47397 * 239.99675 * 3 2 1 5 5 H 1.48500 * 109.47568 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46800 * 120.00110 * 3 2 1 7 7 C 1.40336 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99987 * 170.01077 * 7 2 1 9 9 C 1.40502 * 120.00235 * 350.00655 * 7 2 1 10 10 C 1.39671 * 123.36052 * 334.70528 * 9 7 2 11 11 C 1.32875 * 115.27687 * 179.97438 * 10 9 7 12 12 S 1.75657 * 110.86630 * 359.77604 * 11 10 9 13 13 C 1.39701 * 123.36121 * 154.70795 * 9 7 2 14 14 C 1.41757 * 125.45626 * 359.96635 * 13 9 7 15 15 O 1.21681 * 119.99905 * 359.97438 * 14 13 9 16 16 O 1.34997 * 119.99786 * 180.02562 * 14 13 9 17 17 C 1.42904 * 117.00133 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47190 * 179.97438 * 17 16 14 19 19 H 1.08998 * 115.56436 * 330.57978 * 18 17 16 20 20 C 1.53187 * 117.51733 * 116.35921 * 18 17 16 21 21 C 1.52117 * 117.51923 * 184.80296 * 18 17 16 22 22 C 1.53710 * 121.71385 * 141.44044 * 21 18 17 23 23 C 1.54694 * 103.69524 * 216.06490 * 22 21 18 24 24 O 1.44498 * 104.86984 * 23.84716 * 23 22 21 25 25 C 1.44635 * 105.46368 * 320.01957 * 24 23 22 26 26 H 0.97002 * 119.99887 * 359.97438 * 1 2 3 27 27 H 1.07994 * 122.36324 * 359.97438 * 10 9 7 28 28 H 1.07996 * 124.57149 * 179.97438 * 11 10 9 29 29 H 1.08998 * 109.46733 * 299.99808 * 17 16 14 30 30 H 1.08995 * 109.47112 * 59.99361 * 17 16 14 31 31 H 1.09001 * 117.51957 * 214.83894 * 20 18 17 32 32 H 1.08993 * 117.52674 * 359.94601 * 20 18 17 33 33 H 1.09000 * 110.57806 * 334.62065 * 22 21 18 34 34 H 1.08998 * 110.58170 * 97.51196 * 22 21 18 35 35 H 1.09004 * 110.35913 * 142.68763 * 23 22 21 36 36 H 1.08998 * 110.36146 * 264.99565 * 23 22 21 37 37 H 1.09000 * 110.42456 * 280.88625 * 25 24 23 38 38 H 1.08997 * 110.42468 * 158.42013 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0939 1.6965 -1.2125 5 1 1.2751 2.7465 0.0006 6 1 3.0939 1.6963 1.2126 7 6 2.0078 -1.2154 -0.0005 8 1 3.0756 -1.2224 -0.1628 9 6 1.3213 -2.4230 0.2101 10 6 0.1144 -2.5088 0.9079 11 6 -0.3955 -3.7315 1.0113 12 16 0.6322 -4.9080 0.2080 13 6 1.7777 -3.6578 -0.2575 14 6 2.9699 -3.8682 -0.9950 15 8 3.6898 -2.9264 -1.2694 16 8 3.3059 -5.1134 -1.3938 17 6 4.5206 -5.2520 -2.1337 18 6 4.7327 -6.7235 -2.4950 19 1 4.3111 -7.4451 -1.7952 20 6 4.7317 -7.0947 -3.9812 21 6 6.0332 -7.0961 -3.1906 22 6 6.7795 -8.3996 -2.8642 23 6 8.2712 -8.0036 -2.9686 24 8 8.2923 -6.5760 -2.7462 25 6 7.1381 -6.0593 -3.4481 26 1 -0.4850 0.8401 0.0004 27 1 -0.3702 -1.6426 1.3333 28 1 -1.3190 -3.9695 1.5179 29 1 4.4600 -4.6586 -3.0460 30 1 5.3568 -4.9027 -1.5281 31 1 4.3102 -8.0608 -4.2587 32 1 4.5791 -6.2907 -4.7011 33 1 6.5416 -8.7348 -1.8547 34 1 6.5365 -9.1730 -3.5929 35 1 8.8539 -8.5153 -2.2025 36 1 8.6576 -8.2388 -3.9603 37 1 7.3453 -5.9817 -4.5154 38 1 6.8503 -5.0887 -3.0442 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884609819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:22 Heat of formation + Delta-G solvation = -88.131805 kcal Electronic energy + Delta-G solvation = -22402.159912 eV Core-core repulsion = 18915.701192 eV Total energy + Delta-G solvation = -3486.458720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.091 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.13302 -39.03134 -36.95569 -36.30196 -34.77322 -33.26307 -30.73348 -29.28677 -27.98649 -27.13263 -26.00357 -22.98695 -22.71029 -21.12962 -20.46181 -19.29656 -18.82835 -17.57805 -16.62357 -16.11177 -15.93330 -15.64805 -15.47267 -15.22994 -15.06117 -14.48166 -13.90578 -13.58819 -13.18609 -12.87361 -12.64573 -12.54450 -12.45446 -11.98392 -11.82186 -11.66427 -11.51158 -11.25871 -11.15159 -11.08676 -10.84822 -10.51591 -10.34866 -10.29339 -10.03972 -9.79601 -9.70080 -9.48891 -9.29831 -8.82241 -7.56727 -7.25867 -7.18729 -4.69584 1.91532 2.91460 2.92751 2.96483 3.14023 3.40540 3.59115 3.70980 3.72221 3.76736 4.00179 4.22301 4.27161 4.66002 4.72643 4.76605 4.96996 5.13712 5.30871 5.33648 5.42067 5.49600 5.52456 5.60866 5.70923 5.76091 5.77593 5.93225 5.94522 6.04311 6.18086 6.62747 6.67885 6.84022 7.01265 7.15004 7.45405 7.52164 7.75857 8.21530 8.41456 8.53801 9.33869 9.69949 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.003541 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.912515 B = 7905.436444 C = 9181.259379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.065 3.935 3 Si 0.929 3.071 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.363 4.363 8 H 0.113 0.887 9 C 0.142 3.858 10 C -0.109 4.109 11 C -0.201 4.201 12 S -0.013 6.013 13 C -0.413 4.413 14 C 0.534 3.466 15 O -0.550 6.550 16 O -0.366 6.366 17 C 0.102 3.898 18 C -0.124 4.124 19 H 0.118 0.882 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.119 4.119 23 C 0.046 3.954 24 O -0.372 6.372 25 C 0.076 3.924 26 H 0.292 0.708 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -9.496 -4.430 12.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.159 4.159 3 Si 0.752 3.248 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.394 4.394 8 H 0.131 0.869 9 C 0.131 3.869 10 C -0.141 4.141 11 C -0.335 4.335 12 S 0.243 5.757 13 C -0.529 4.529 14 C 0.390 3.610 15 O -0.447 6.447 16 O -0.285 6.285 17 C 0.027 3.973 18 C -0.142 4.142 19 H 0.135 0.865 20 C -0.192 4.192 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.031 4.031 24 O -0.291 6.291 25 C 0.000 4.000 26 H 0.104 0.896 27 H 0.162 0.838 28 H 0.158 0.842 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.604 -10.542 -4.619 13.270 hybrid contribution 0.066 2.022 -0.027 2.023 sum 6.670 -8.520 -4.646 11.776 Atomic orbital electron populations 1.69659 1.08182 1.30944 1.30079 1.26455 0.95027 1.02833 0.91538 0.85986 0.79986 0.77913 0.80962 1.18053 1.19882 1.18124 1.20185 0.97929 0.88955 1.32282 0.86926 1.16908 0.90263 0.91540 0.88190 1.20585 0.96697 0.96587 1.00256 1.25264 1.03724 0.97389 1.07144 1.83208 1.18793 1.12793 1.60892 1.20989 1.05558 0.96578 1.29759 1.18253 0.85262 0.79317 0.78136 1.90711 1.53447 1.41942 1.58613 1.86178 1.40377 1.34073 1.67907 1.21739 0.86725 0.93158 0.95670 1.22182 0.98718 0.97419 0.95852 0.86450 1.23113 0.97977 1.03508 0.94558 1.22312 0.90185 0.97469 1.05961 1.22404 0.94630 0.95760 1.02816 1.23421 0.96030 0.82459 1.01148 1.89186 1.46156 1.20050 1.73685 1.22850 0.83369 0.97031 0.96766 0.89641 0.83820 0.84207 0.92289 0.91879 0.88176 0.88157 0.90166 0.90196 0.89094 0.92304 0.91595 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.92 10.87 55.57 0.60 -17.32 16 2 C 0.06 1.53 5.37 -17.28 -0.09 1.44 16 3 Si 0.93 17.90 29.57 -169.99 -5.03 12.87 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 7 C -0.36 -9.61 8.41 -37.94 -0.32 -9.93 16 8 H 0.11 3.10 6.06 -52.48 -0.32 2.79 16 9 C 0.14 3.78 5.53 -107.96 -0.60 3.18 16 10 C -0.11 -2.63 8.81 -40.90 -0.36 -2.99 16 11 C -0.20 -4.37 11.11 28.88 0.32 -4.04 16 12 S -0.01 -0.30 23.02 -107.50 -2.47 -2.77 16 13 C -0.41 -10.84 6.36 -37.69 -0.24 -11.08 16 14 C 0.53 13.84 7.73 32.08 0.25 14.09 16 15 O -0.55 -15.13 14.10 -19.40 -0.27 -15.41 16 16 O -0.37 -8.22 9.87 -41.31 -0.41 -8.63 16 17 C 0.10 1.86 4.53 37.16 0.17 2.02 16 18 C -0.12 -1.75 5.94 -90.97 -0.54 -2.29 16 19 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 20 C -0.15 -1.77 9.97 -27.00 -0.27 -2.04 16 21 C -0.16 -1.86 2.51 -154.60 -0.39 -2.25 16 22 C -0.12 -1.14 6.88 -25.47 -0.18 -1.32 16 23 C 0.05 0.45 7.65 38.05 0.29 0.74 16 24 O -0.37 -4.97 11.65 -35.23 -0.41 -5.38 16 25 C 0.08 0.94 7.29 37.52 0.27 1.21 16 26 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 27 H 0.14 3.40 6.38 -52.49 -0.33 3.07 16 28 H 0.14 2.54 8.06 -52.49 -0.42 2.11 16 29 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 30 H 0.06 1.17 7.62 -51.93 -0.40 0.78 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.12 8.04 -51.93 -0.42 0.71 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.29 6.56 -51.93 -0.34 0.95 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -29.41 334.35 -9.36 -38.77 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.73 Total: 6.10 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.68 Total: -13.26 kcal Atomic # 7 Polarization: -17.92 SS G_CDS: 0.60 Total: -17.32 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.09 Total: -29.42 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -2.47 Total: -2.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.41 -9.36 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884609819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.364 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds