Wall clock time and date at job start Tue Mar 31 2020 09:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30617 * 1 3 3 Si 1.86795 * 119.99770 * 2 1 4 4 H 1.48502 * 109.47397 * 239.99675 * 3 2 1 5 5 H 1.48500 * 109.47568 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46800 * 120.00110 * 3 2 1 7 7 C 1.40336 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99987 * 170.01077 * 7 2 1 9 9 C 1.40502 * 120.00235 * 350.00655 * 7 2 1 10 10 C 1.39671 * 123.36052 * 334.70528 * 9 7 2 11 11 C 1.32875 * 115.27687 * 179.97438 * 10 9 7 12 12 S 1.75657 * 110.86630 * 359.77604 * 11 10 9 13 13 C 1.39701 * 123.36121 * 154.70795 * 9 7 2 14 14 C 1.41757 * 125.45626 * 359.96635 * 13 9 7 15 15 O 1.21681 * 119.99905 * 359.97438 * 14 13 9 16 16 O 1.34997 * 119.99786 * 180.02562 * 14 13 9 17 17 C 1.42904 * 117.00133 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47190 * 179.97438 * 17 16 14 19 19 H 1.08998 * 115.56436 * 330.57978 * 18 17 16 20 20 C 1.53187 * 117.51733 * 116.35921 * 18 17 16 21 21 C 1.52117 * 117.51923 * 184.80296 * 18 17 16 22 22 C 1.53710 * 121.71385 * 141.44044 * 21 18 17 23 23 C 1.54694 * 103.69524 * 216.06490 * 22 21 18 24 24 O 1.44498 * 104.86984 * 23.84716 * 23 22 21 25 25 C 1.44635 * 105.46368 * 320.01957 * 24 23 22 26 26 H 0.97002 * 119.99887 * 359.97438 * 1 2 3 27 27 H 1.07994 * 122.36324 * 359.97438 * 10 9 7 28 28 H 1.07996 * 124.57149 * 179.97438 * 11 10 9 29 29 H 1.08998 * 109.46733 * 299.99808 * 17 16 14 30 30 H 1.08995 * 109.47112 * 59.99361 * 17 16 14 31 31 H 1.09001 * 117.51957 * 214.83894 * 20 18 17 32 32 H 1.08993 * 117.52674 * 359.94601 * 20 18 17 33 33 H 1.09000 * 110.57806 * 334.62065 * 22 21 18 34 34 H 1.08998 * 110.58170 * 97.51196 * 22 21 18 35 35 H 1.09004 * 110.35913 * 142.68763 * 23 22 21 36 36 H 1.08998 * 110.36146 * 264.99565 * 23 22 21 37 37 H 1.09000 * 110.42456 * 280.88625 * 25 24 23 38 38 H 1.08997 * 110.42468 * 158.42013 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.0939 1.6965 -1.2125 5 1 1.2751 2.7465 0.0006 6 1 3.0939 1.6963 1.2126 7 6 2.0078 -1.2154 -0.0005 8 1 3.0756 -1.2224 -0.1628 9 6 1.3213 -2.4230 0.2101 10 6 0.1144 -2.5088 0.9079 11 6 -0.3955 -3.7315 1.0113 12 16 0.6322 -4.9080 0.2080 13 6 1.7777 -3.6578 -0.2575 14 6 2.9699 -3.8682 -0.9950 15 8 3.6898 -2.9264 -1.2694 16 8 3.3059 -5.1134 -1.3938 17 6 4.5206 -5.2520 -2.1337 18 6 4.7327 -6.7235 -2.4950 19 1 4.3111 -7.4451 -1.7952 20 6 4.7317 -7.0947 -3.9812 21 6 6.0332 -7.0961 -3.1906 22 6 6.7795 -8.3996 -2.8642 23 6 8.2712 -8.0036 -2.9686 24 8 8.2923 -6.5760 -2.7462 25 6 7.1381 -6.0593 -3.4481 26 1 -0.4850 0.8401 0.0004 27 1 -0.3702 -1.6426 1.3333 28 1 -1.3190 -3.9695 1.5179 29 1 4.4600 -4.6586 -3.0460 30 1 5.3568 -4.9027 -1.5281 31 1 4.3102 -8.0608 -4.2587 32 1 4.5791 -6.2907 -4.7011 33 1 6.5416 -8.7348 -1.8547 34 1 6.5365 -9.1730 -3.5929 35 1 8.8539 -8.5153 -2.2025 36 1 8.6576 -8.2388 -3.9603 37 1 7.3453 -5.9817 -4.5154 38 1 6.8503 -5.0887 -3.0442 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884609819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:21 Heat of formation + Delta-G solvation = -104.019660 kcal Electronic energy + Delta-G solvation = -22402.848861 eV Core-core repulsion = 18915.701192 eV Total energy + Delta-G solvation = -3487.147669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.091 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32309 -40.65720 -38.68797 -37.58287 -36.54477 -35.11357 -31.68112 -31.08414 -29.47518 -28.38040 -27.53845 -24.54134 -23.79562 -22.57448 -21.96726 -20.71334 -20.33502 -19.34058 -18.35932 -17.46549 -17.23121 -17.20855 -16.81769 -16.71839 -16.15514 -15.93065 -15.52572 -14.98675 -14.49943 -14.28843 -14.21008 -13.81791 -13.70989 -13.64763 -13.26678 -13.22756 -13.01393 -12.84560 -12.49956 -12.27341 -12.19908 -12.06275 -11.91378 -11.77997 -11.48209 -11.15610 -11.01211 -10.90828 -10.80075 -10.62425 -9.46153 -9.11718 -8.99605 -6.64371 0.04129 1.31329 1.33618 1.35554 1.44987 1.73473 1.87165 2.06105 2.12313 2.29846 2.59443 3.00972 3.18648 3.30768 3.64667 3.70226 3.90839 4.09099 4.19783 4.27164 4.38279 4.40244 4.45528 4.57173 4.65078 4.72168 4.81629 4.83126 4.85695 4.94860 5.01246 5.09305 5.11106 5.16416 5.32773 5.55973 5.66534 5.77886 5.83392 6.27725 6.45391 6.61097 7.38780 7.92711 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.003541 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.912515 B = 7905.436444 C = 9181.259379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.034 3.966 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.245 1.245 6 H -0.254 1.254 7 C -0.394 4.394 8 H 0.089 0.911 9 C 0.118 3.882 10 C -0.135 4.135 11 C -0.177 4.177 12 S 0.018 5.982 13 C -0.458 4.458 14 C 0.524 3.476 15 O -0.582 6.582 16 O -0.367 6.367 17 C 0.102 3.898 18 C -0.149 4.149 19 H 0.117 0.883 20 C -0.135 4.135 21 C -0.147 4.147 22 C -0.115 4.115 23 C 0.040 3.960 24 O -0.402 6.402 25 C 0.072 3.928 26 H 0.308 0.692 27 H 0.146 0.854 28 H 0.184 0.816 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 -10.435 -4.913 12.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.188 4.188 3 Si 0.812 3.188 4 H -0.193 1.193 5 H -0.168 1.168 6 H -0.178 1.178 7 C -0.424 4.424 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.167 4.167 11 C -0.312 4.312 12 S 0.275 5.725 13 C -0.574 4.574 14 C 0.382 3.618 15 O -0.482 6.482 16 O -0.286 6.286 17 C 0.027 3.973 18 C -0.167 4.167 19 H 0.135 0.865 20 C -0.172 4.172 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.036 4.036 24 O -0.321 6.321 25 C -0.005 4.005 26 H 0.120 0.880 27 H 0.164 0.836 28 H 0.201 0.799 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.942 -11.520 -5.100 13.929 hybrid contribution 0.251 2.261 0.108 2.277 sum 6.193 -9.260 -4.992 12.207 Atomic orbital electron populations 1.69616 1.08917 1.32813 1.28366 1.27164 0.95901 1.05039 0.90710 0.85062 0.79006 0.74372 0.80314 1.19315 1.16840 1.17785 1.20266 0.97256 0.90803 1.34085 0.89347 1.17351 0.91543 0.91881 0.88560 1.20539 0.96699 0.97762 1.01724 1.25740 1.04227 0.96160 1.05069 1.82911 1.17591 1.11511 1.60533 1.21421 1.06889 0.98255 1.30816 1.18453 0.85297 0.79903 0.78117 1.90666 1.54499 1.43044 1.59980 1.86141 1.42105 1.32195 1.68150 1.21952 0.84513 0.96309 0.94535 1.22072 1.02123 0.94314 0.98196 0.86518 1.23237 0.97103 1.04628 0.92188 1.22387 0.89605 0.98392 1.04389 1.22467 0.94052 0.95059 1.03608 1.23685 0.96439 0.80569 1.02872 1.89157 1.46390 1.22344 1.74211 1.22893 0.83638 0.96301 0.97666 0.88005 0.83636 0.79910 0.92791 0.93468 0.85562 0.88036 0.90314 0.87429 0.87781 0.90255 0.89549 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.87 10.87 21.89 0.24 -35.63 16 2 C 0.03 1.63 5.37 85.38 0.46 2.09 16 3 Si 0.99 36.55 29.57 68.60 2.03 38.58 16 4 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.25 -7.85 7.11 99.48 0.71 -7.15 16 6 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.39 -21.73 8.41 23.33 0.20 -21.54 16 8 H 0.09 5.20 6.06 -2.91 -0.02 5.18 16 9 C 0.12 6.45 5.53 -22.03 -0.12 6.33 16 10 C -0.14 -6.52 8.81 21.44 0.19 -6.33 16 11 C -0.18 -7.43 11.11 66.64 0.74 -6.69 16 12 S 0.02 0.82 23.02 -56.49 -1.30 -0.48 16 13 C -0.46 -24.88 6.36 23.49 0.15 -24.73 16 14 C 0.52 28.63 7.73 68.69 0.53 29.16 16 15 O -0.58 -34.18 14.10 19.24 0.27 -33.91 16 16 O -0.37 -17.24 9.87 -59.16 -0.58 -17.82 16 17 C 0.10 3.89 4.53 71.98 0.33 4.21 16 18 C -0.15 -4.22 5.94 -11.02 -0.07 -4.29 16 19 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 20 C -0.13 -2.84 9.97 30.42 0.30 -2.53 16 21 C -0.15 -3.28 2.51 -52.24 -0.13 -3.41 16 22 C -0.11 -1.92 6.88 31.41 0.22 -1.70 16 23 C 0.04 0.70 7.65 72.56 0.56 1.25 16 24 O -0.40 -10.55 11.65 -148.98 -1.74 -12.28 16 25 C 0.07 1.74 7.29 72.21 0.53 2.27 16 26 H 0.31 12.36 8.29 -92.71 -0.77 11.59 16 27 H 0.15 6.85 6.38 -2.91 -0.02 6.84 16 28 H 0.18 5.96 8.06 -2.91 -0.02 5.93 16 29 H 0.05 2.07 7.87 -2.39 -0.02 2.05 16 30 H 0.05 1.91 7.62 -2.39 -0.02 1.89 16 31 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.10 2.13 8.04 -2.39 -0.02 2.11 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 2.11 6.56 -2.39 -0.02 2.10 16 Total: -1.00 -66.77 334.35 3.87 -62.89 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 1.08 Total: 24.56 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 3.87 Total: -25.91 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.24 Total: -35.63 kcal Atomic # 8 Polarization: -61.96 SS G_CDS: -2.05 Total: -64.01 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -1.30 Total: -0.48 kcal Total: -66.77 3.87 -62.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884609819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.129 kcal (2) G-P(sol) polarization free energy of solvation -66.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds