Wall clock time and date at job start Tue Mar 31 2020 10:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.46794 * 2 1 4 4 C 1.50707 * 109.47170 * 119.99428 * 2 1 3 5 5 H 1.07997 * 119.99588 * 120.00294 * 4 2 1 6 6 C 1.37874 * 120.00114 * 300.00441 * 4 2 1 7 7 N 1.31512 * 119.99919 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00144 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47272 * 89.99357 * 8 6 4 10 10 H 1.48498 * 109.47023 * 210.00156 * 8 6 4 11 11 H 1.48502 * 109.46668 * 329.99732 * 8 6 4 12 12 N 1.46891 * 109.47473 * 239.99909 * 2 1 3 13 13 C 1.46900 * 111.00028 * 159.45122 * 12 2 1 14 14 H 1.08997 * 110.54193 * 40.65867 * 13 12 2 15 15 C 1.54632 * 110.48907 * 163.27029 * 13 12 2 16 16 C 1.54656 * 101.68843 * 93.66380 * 15 13 12 17 17 N 1.46765 * 105.38087 * 25.76919 * 16 15 13 18 18 C 1.39969 * 124.35387 * 162.85936 * 17 16 15 19 19 C 1.38860 * 120.06368 * 173.79829 * 18 17 16 20 20 C 1.38108 * 119.94445 * 180.02562 * 19 18 17 21 21 C 1.38379 * 120.06092 * 359.97438 * 20 19 18 22 22 Cl 1.73595 * 119.94686 * 179.97438 * 21 20 19 23 23 C 1.38393 * 120.11165 * 0.25852 * 21 20 19 24 24 C 1.38111 * 120.05674 * 359.48547 * 23 21 20 25 25 C 1.34426 * 111.29852 * 342.58681 * 17 16 15 26 26 O 1.21289 * 124.94047 * 180.64839 * 25 17 16 27 27 H 1.09005 * 109.46801 * 175.08834 * 1 2 3 28 28 H 1.08995 * 109.47757 * 295.08795 * 1 2 3 29 29 H 1.08994 * 109.47152 * 55.09157 * 1 2 3 30 30 H 0.97001 * 120.00027 * 180.02562 * 7 6 4 31 31 H 1.00901 * 111.00137 * 283.40035 * 12 2 1 32 32 H 1.09001 * 110.97298 * 211.99911 * 15 13 12 33 33 H 1.09000 * 110.96504 * 335.72758 * 15 13 12 34 34 H 1.09004 * 110.40072 * 266.74797 * 16 15 13 35 35 H 1.08994 * 110.18456 * 144.67931 * 16 15 13 36 36 H 1.07997 * 120.02662 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.96736 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.96912 * 179.74435 * 23 21 20 39 39 H 1.07995 * 120.02975 * 180.25772 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6245 1.2791 2.6541 9 1 -0.8030 0.8726 2.6997 10 1 0.9756 1.9953 3.9067 11 1 0.8468 2.1765 1.4920 12 7 2.0197 -0.6925 -1.1993 13 6 3.4059 -0.3097 -1.4991 14 1 3.9908 -0.2420 -0.5819 15 6 4.0475 -1.3216 -2.4766 16 6 3.7788 -0.6502 -3.8436 17 7 3.6612 0.7843 -3.5564 18 6 3.7584 1.7936 -4.5213 19 6 3.5058 3.1142 -4.1744 20 6 3.6020 4.1081 -5.1285 21 6 3.9501 3.7889 -6.4292 22 17 4.0694 5.0404 -7.6263 23 6 4.1976 2.4729 -6.7787 24 6 4.1080 1.4759 -5.8272 25 6 3.4422 1.0040 -2.2484 26 8 3.2955 2.0966 -1.7426 27 1 -0.3633 -1.0240 -0.0880 28 1 -0.3634 0.4357 0.9306 29 1 -0.3633 0.5881 -0.8427 30 1 1.9025 -0.5282 4.4376 31 1 1.9344 -1.6929 -1.0994 32 1 5.1168 -1.4204 -2.2895 33 1 3.5517 -2.2904 -2.4160 34 1 2.8510 -1.0256 -4.2755 35 1 4.6122 -0.8318 -4.5221 36 1 3.2345 3.3640 -3.1593 37 1 3.4052 5.1353 -4.8592 38 1 4.4652 2.2259 -7.7955 39 1 4.3053 0.4497 -6.0995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610088085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:49 Heat of formation + Delta-G solvation = -20.133884 kcal Electronic energy + Delta-G solvation = -22997.638703 eV Core-core repulsion = 19544.377639 eV Total energy + Delta-G solvation = -3453.261064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.19981 -39.89210 -37.99143 -37.66936 -37.06281 -34.69958 -33.33399 -32.13575 -30.82714 -29.46774 -27.31703 -27.06550 -24.36805 -24.00684 -22.28141 -22.05741 -20.69685 -19.04579 -18.76080 -17.88638 -17.61002 -17.03902 -16.72890 -16.00111 -15.78201 -15.50987 -15.29688 -14.92705 -14.72649 -14.54438 -14.49142 -14.38464 -14.08709 -13.95718 -13.51530 -13.17270 -13.03864 -12.89995 -12.71464 -12.58137 -12.29786 -12.02294 -11.97525 -11.83847 -11.50669 -11.37599 -10.97017 -10.79517 -10.72324 -10.11021 -9.32100 -8.90903 -8.37769 -6.41067 0.00625 0.25277 1.16603 1.22989 1.32233 1.41662 1.43426 1.76043 2.26065 2.65776 2.99366 3.24119 3.37583 3.59250 3.83042 3.88383 3.96188 4.16733 4.27181 4.33372 4.50924 4.55908 4.60785 4.66235 4.69134 4.87152 4.92693 4.98424 5.01151 5.04667 5.11404 5.17864 5.23979 5.37362 5.41995 5.46367 5.86077 5.97132 5.99863 6.23486 6.56356 6.71568 6.97102 7.28021 8.77887 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.003400 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.282277 B = 8233.025149 C = 9023.062788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.177 3.823 3 H 0.017 0.983 4 C -0.540 4.540 5 H 0.050 0.950 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.939 3.061 9 H -0.259 1.259 10 H -0.299 1.299 11 H -0.267 1.267 12 N -0.650 5.650 13 C 0.052 3.948 14 H 0.057 0.943 15 C -0.118 4.118 16 C 0.101 3.899 17 N -0.553 5.553 18 C 0.162 3.838 19 C -0.176 4.176 20 C -0.086 4.086 21 C -0.071 4.071 22 Cl -0.070 7.070 23 C -0.074 4.074 24 C -0.136 4.136 25 C 0.523 3.477 26 O -0.551 6.551 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.049 0.951 30 H 0.266 0.734 31 H 0.355 0.645 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.167 0.833 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 1.472 -24.837 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.067 3.933 3 H 0.035 0.965 4 C -0.579 4.579 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.768 3.232 9 H -0.185 1.185 10 H -0.227 1.227 11 H -0.192 1.192 12 N -0.283 5.283 13 C -0.061 4.061 14 H 0.075 0.925 15 C -0.156 4.156 16 C -0.019 4.019 17 N -0.275 5.275 18 C 0.067 3.933 19 C -0.196 4.196 20 C -0.105 4.105 21 C -0.099 4.099 22 Cl -0.042 7.042 23 C -0.093 4.093 24 C -0.156 4.156 25 C 0.312 3.688 26 O -0.427 6.427 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.185 0.815 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.745 2.567 -24.913 25.490 hybrid contribution -0.067 0.693 1.870 1.995 sum 4.678 3.260 -23.043 23.738 Atomic orbital electron populations 1.21917 0.96901 1.01664 0.98624 1.19493 0.92787 0.94118 0.86910 0.96465 1.21951 1.31686 1.12949 0.91337 0.93144 1.25665 0.96950 0.99088 0.95813 1.70013 1.47265 1.42096 0.98552 0.85998 0.79925 0.80621 0.76679 1.18503 1.22690 1.19244 1.60606 1.16577 1.12962 1.38181 1.22095 0.92603 0.93362 0.98079 0.92466 1.22881 1.02731 0.98581 0.91400 1.22613 1.05198 0.75484 0.98577 1.45973 1.66808 1.08662 1.06100 1.18166 0.97832 0.87508 0.89768 1.21522 1.04318 0.92213 1.01584 1.20983 0.98358 1.00051 0.91100 1.20977 1.07918 0.90734 0.90273 1.98356 1.96829 1.52895 1.56089 1.21174 0.97540 0.89426 1.01168 1.21052 1.03246 1.01912 0.89384 1.21507 0.73454 0.91021 0.82774 1.90564 1.49485 1.29711 1.72957 0.91610 0.95259 0.93225 0.92502 0.82480 0.87726 0.86122 0.88182 0.85894 0.85249 0.84350 0.81516 0.81048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 9.02 71.98 0.65 -5.10 16 2 C 0.18 8.32 2.05 44.17 0.09 8.41 16 3 H 0.02 0.93 5.96 -2.38 -0.01 0.92 16 4 C -0.54 -29.68 8.65 25.60 0.22 -29.46 16 5 H 0.05 2.94 8.04 -2.91 -0.02 2.91 16 6 C 0.02 1.38 5.45 84.65 0.46 1.84 16 7 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 8 Si 0.94 46.99 24.41 68.60 1.67 48.66 16 9 H -0.26 -12.09 6.83 99.48 0.68 -11.41 16 10 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 11 H -0.27 -13.50 6.53 99.48 0.65 -12.85 16 12 N -0.65 -23.92 6.05 -473.35 -2.86 -26.79 16 13 C 0.05 1.76 3.06 44.91 0.14 1.90 16 14 H 0.06 2.34 7.60 -2.39 -0.02 2.32 16 15 C -0.12 -2.26 6.86 31.71 0.22 -2.04 16 16 C 0.10 1.61 6.53 86.89 0.57 2.18 16 17 N -0.55 -14.55 3.14 -627.32 -1.97 -16.52 16 18 C 0.16 4.10 6.60 38.14 0.25 4.35 16 19 C -0.18 -5.21 9.29 22.39 0.21 -5.00 16 20 C -0.09 -2.09 9.82 22.27 0.22 -1.87 16 21 C -0.07 -1.44 6.32 22.34 0.14 -1.30 16 22 Cl -0.07 -1.28 28.95 -2.72 -0.08 -1.36 16 23 C -0.07 -1.18 9.82 22.28 0.22 -0.96 16 24 C -0.14 -2.27 9.42 22.39 0.21 -2.06 16 25 C 0.52 18.97 7.31 87.90 0.64 19.61 16 26 O -0.55 -24.97 13.96 -3.06 -0.04 -25.01 16 27 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 28 H 0.03 1.32 3.21 -2.39 -0.01 1.32 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.35 11.81 8.03 -89.69 -0.72 11.09 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.12 1.82 7.68 -2.39 -0.02 1.80 16 34 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.12 0.99 7.22 -2.39 -0.02 0.98 16 36 H 0.13 4.78 5.26 -2.91 -0.02 4.77 16 37 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.17 1.55 6.74 -2.91 -0.02 1.53 16 Total: -1.00 -73.66 327.86 1.54 -72.12 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.29 Total: 16.01 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 4.24 Total: -9.51 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -4.53 Total: -100.91 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.04 Total: -25.01 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.67 Total: 48.66 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -73.66 1.54 -72.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610088085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.984 kcal (2) G-P(sol) polarization free energy of solvation -73.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds