Wall clock time and date at job start Tue Mar 31 2020 09:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46681 * 2 1 4 4 N 1.46900 * 109.47545 * 119.99666 * 2 1 3 5 5 C 1.46897 * 111.00318 * 164.53276 * 4 2 1 6 6 C 1.50697 * 109.46911 * 287.98333 * 5 4 2 7 7 H 1.07999 * 120.00183 * 4.56363 * 6 5 4 8 8 C 1.37880 * 120.00101 * 184.56737 * 6 5 4 9 9 N 1.31520 * 119.99909 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00265 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47329 * 60.00051 * 10 8 6 12 12 H 1.48507 * 109.47167 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47126 * 299.99948 * 10 8 6 14 14 C 1.46902 * 110.99742 * 288.48735 * 4 2 1 15 15 C 1.50703 * 109.46907 * 78.44073 * 14 4 2 16 16 N 1.27895 * 124.23986 * 66.30731 * 15 14 4 17 17 C 1.34723 * 117.84387 * 180.02562 * 16 15 14 18 18 C 1.40964 * 129.65425 * 180.26222 * 17 16 15 19 19 C 1.36162 * 120.45688 * 180.25620 * 18 17 16 20 20 C 1.38992 * 120.75536 * 359.45047 * 19 18 17 21 21 F 1.35093 * 119.99737 * 180.29826 * 20 19 18 22 22 C 1.37856 * 120.00734 * 0.27404 * 20 19 18 23 23 C 1.39335 * 119.93532 * 0.02562 * 22 20 19 24 24 S 1.70653 * 124.22980 * 246.34174 * 15 14 4 25 25 H 1.08993 * 109.47395 * 309.14804 * 1 2 3 26 26 H 1.09001 * 109.47018 * 69.15670 * 1 2 3 27 27 H 1.09005 * 109.46393 * 189.15010 * 1 2 3 28 28 H 1.08994 * 109.47559 * 240.00110 * 2 1 3 29 29 H 1.09002 * 109.47159 * 171.71047 * 3 2 1 30 30 H 1.08999 * 109.47363 * 291.70645 * 3 2 1 31 31 H 1.08997 * 109.47525 * 51.71269 * 3 2 1 32 32 H 1.08997 * 109.46986 * 47.98188 * 5 4 2 33 33 H 1.08995 * 109.47274 * 167.98310 * 5 4 2 34 34 H 0.96996 * 120.00220 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47326 * 318.43792 * 14 4 2 36 36 H 1.08997 * 109.46858 * 198.43193 * 14 4 2 37 37 H 1.07998 * 119.77313 * 359.97438 * 18 17 16 38 38 H 1.08004 * 119.62538 * 179.72744 * 19 18 17 39 39 H 1.08003 * 120.02801 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 3.4414 -1.0370 1.0649 6 6 3.5940 -2.1609 0.0727 7 1 2.7319 -2.5280 -0.4644 8 6 4.8343 -2.7208 -0.1495 9 7 5.8841 -2.2742 0.5049 10 14 5.0234 -4.1144 -1.3788 11 1 4.5932 -3.6511 -2.7225 12 1 6.4460 -4.5374 -1.4326 13 1 4.1815 -5.2631 -0.9583 14 6 1.7853 0.1135 2.4051 15 6 0.3413 -0.0096 2.8185 16 7 -0.1968 -1.0904 3.2405 17 6 -1.5012 -1.0549 3.5754 18 6 -2.3323 -2.0823 4.0661 19 6 -3.6431 -1.8373 4.3418 20 6 -4.1836 -0.5703 4.1563 21 9 -5.4846 -0.3428 4.4404 22 6 -3.3922 0.4544 3.6829 23 6 -2.0506 0.2184 3.3902 24 16 -0.7808 1.2756 2.7815 25 1 -0.3634 0.6487 0.7969 26 1 -0.3633 0.3657 -0.9604 27 1 -0.3632 -1.0147 0.1634 28 1 1.8934 -0.5138 -0.8899 29 1 3.1198 1.4462 0.1482 30 1 1.8026 1.9118 -0.9548 31 1 1.5607 1.9974 0.8066 32 1 3.9949 -0.1657 0.7148 33 1 3.8323 -1.3511 2.0326 34 1 6.7566 -2.6683 0.3490 35 1 2.0151 1.1579 2.1944 36 1 2.4257 -0.2441 3.2113 37 1 -1.9278 -3.0717 4.2202 38 1 -4.2688 -2.6355 4.7131 39 1 -3.8118 1.4391 3.5390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519861183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:02 Heat of formation + Delta-G solvation = 25.017905 kcal Electronic energy + Delta-G solvation = -22804.091614 eV Core-core repulsion = 19367.204974 eV Total energy + Delta-G solvation = -3436.886640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.15003 -40.40604 -38.24232 -36.41324 -32.85809 -31.50202 -31.29470 -30.02648 -27.69179 -26.82134 -25.52300 -24.07928 -22.69700 -22.14428 -20.98462 -19.18339 -18.58288 -17.68247 -16.70810 -16.21632 -15.92405 -15.73807 -15.41815 -14.81744 -14.51610 -14.21957 -14.14503 -13.99728 -13.60863 -13.34555 -13.05097 -12.74431 -12.47206 -12.26406 -12.09748 -11.79824 -11.51668 -11.12707 -11.01006 -10.90412 -10.80743 -10.69508 -10.53637 -10.37107 -9.96935 -9.87773 -9.46491 -9.24900 -8.48296 -8.42600 -8.11137 -7.34671 -6.03732 -4.04286 0.27119 0.82631 1.13987 1.68098 2.22028 3.33925 3.37914 3.41300 3.45368 3.91443 3.99308 4.37797 4.42202 4.68524 4.82382 4.97006 5.05519 5.25854 5.32403 5.42463 5.47607 5.64130 5.67997 5.78845 5.84651 5.88164 5.90871 5.98990 6.06948 6.16272 6.22140 6.42451 6.47663 6.70526 6.76392 7.19661 7.28197 7.73187 7.78888 8.03844 8.13560 8.47157 9.01965 9.59352 11.06902 Molecular weight = 308.11amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.003592 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.558164 B = 7793.642796 C = 8411.342384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.078 3.922 3 C -0.183 4.183 4 N -0.514 5.514 5 C 0.194 3.806 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.109 3.891 15 C 0.137 3.863 16 N -0.442 5.442 17 C 0.083 3.917 18 C -0.033 4.033 19 C -0.141 4.141 20 C 0.105 3.895 21 F -0.135 7.135 22 C -0.105 4.105 23 C -0.170 4.170 24 S 0.095 5.905 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.046 0.954 32 H -0.003 1.003 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.763 7.632 6.484 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.031 4.031 3 C -0.242 4.242 4 N -0.238 5.238 5 C 0.070 3.930 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.023 4.023 15 C -0.149 4.149 16 N -0.153 5.153 17 C -0.039 4.039 18 C -0.054 4.054 19 C -0.163 4.163 20 C 0.083 3.917 21 F -0.114 7.114 22 C -0.129 4.129 23 C -0.290 4.290 24 S 0.353 5.647 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.015 0.985 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.381 7.737 6.308 19.184 hybrid contribution -0.108 -0.706 -0.421 0.829 sum -16.489 7.031 5.888 18.868 Atomic orbital electron populations 1.22376 0.96249 1.02107 1.01094 1.21673 0.93999 0.91931 0.95472 1.22459 1.02121 0.98599 1.01012 1.62244 1.23182 1.39578 0.98803 1.19825 0.79756 0.95409 0.98053 1.21068 0.93624 1.17209 1.22290 0.91944 1.24952 0.95818 0.97219 0.96477 1.69935 0.99463 1.42485 1.42023 0.86566 0.76849 0.82532 0.81496 1.20314 1.21394 1.20173 1.20965 0.86227 0.98268 0.96814 1.27165 1.01575 0.89632 0.96552 1.66199 1.08370 1.26992 1.13764 1.19395 0.89617 0.92766 1.02102 1.20282 0.91271 0.98425 0.95383 1.20648 0.95908 0.96041 1.03729 1.17346 0.78581 0.94207 1.01609 1.91508 1.33342 1.95267 1.91263 1.20090 0.91030 0.99571 1.02213 1.23614 0.98964 0.98158 1.08225 1.83933 1.01221 1.15557 1.64011 0.92726 0.93155 0.92367 0.88690 0.91749 0.92617 0.93502 0.98540 0.94705 0.92864 0.91908 0.88033 0.83606 0.83710 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 8.33 37.16 0.31 -2.28 16 2 C 0.08 1.43 2.78 -67.71 -0.19 1.24 16 3 C -0.18 -2.89 8.18 37.16 0.30 -2.58 16 4 N -0.51 -10.54 4.35 -229.53 -1.00 -11.54 16 5 C 0.19 4.78 4.64 -4.98 -0.02 4.76 16 6 C -0.50 -13.77 8.46 -34.44 -0.29 -14.06 16 7 H 0.06 1.72 7.49 -52.49 -0.39 1.32 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 10 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.11 1.88 5.33 -4.97 -0.03 1.86 16 15 C 0.14 2.21 4.88 -13.92 -0.07 2.14 16 16 N -0.44 -7.65 10.57 -9.09 -0.10 -7.75 16 17 C 0.08 1.23 7.00 -84.94 -0.59 0.63 16 18 C -0.03 -0.40 10.05 -39.30 -0.39 -0.79 16 19 C -0.14 -1.43 9.92 -40.05 -0.40 -1.82 16 20 C 0.11 1.14 7.30 -39.44 -0.29 0.85 16 21 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 22 C -0.11 -1.19 10.05 -39.31 -0.40 -1.58 16 23 C -0.17 -2.27 6.55 -38.55 -0.25 -2.52 16 24 S 0.09 1.23 20.40 -107.50 -2.19 -0.96 16 25 H 0.05 0.81 3.49 -30.94 -0.11 0.70 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.10 1.96 6.98 -51.93 -0.36 1.60 16 29 H 0.06 1.12 6.57 -51.93 -0.34 0.77 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.65 6.39 -51.93 -0.33 0.32 16 32 H 0.00 -0.08 6.49 -51.93 -0.34 -0.42 16 33 H 0.03 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.06 0.96 5.29 -51.93 -0.27 0.69 16 36 H 0.10 1.78 7.59 -51.93 -0.39 1.39 16 37 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 39 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -29.72 330.53 -9.57 -39.29 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.61 Total: -1.05 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.40 Total: -12.68 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.36 Total: -44.64 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.19 Total: -0.96 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.72 -9.57 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519861183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.309 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds