Wall clock time and date at job start Tue Mar 31 2020 09:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46681 * 2 1 4 4 N 1.46900 * 109.47545 * 119.99666 * 2 1 3 5 5 C 1.46897 * 111.00318 * 164.53276 * 4 2 1 6 6 C 1.50697 * 109.46911 * 287.98333 * 5 4 2 7 7 H 1.07999 * 120.00183 * 4.56363 * 6 5 4 8 8 C 1.37880 * 120.00101 * 184.56737 * 6 5 4 9 9 N 1.31520 * 119.99909 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00265 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47329 * 60.00051 * 10 8 6 12 12 H 1.48507 * 109.47167 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47126 * 299.99948 * 10 8 6 14 14 C 1.46902 * 110.99742 * 288.48735 * 4 2 1 15 15 C 1.50703 * 109.46907 * 78.44073 * 14 4 2 16 16 N 1.27895 * 124.23986 * 66.30731 * 15 14 4 17 17 C 1.34723 * 117.84387 * 180.02562 * 16 15 14 18 18 C 1.40964 * 129.65425 * 180.26222 * 17 16 15 19 19 C 1.36162 * 120.45688 * 180.25620 * 18 17 16 20 20 C 1.38992 * 120.75536 * 359.45047 * 19 18 17 21 21 F 1.35093 * 119.99737 * 180.29826 * 20 19 18 22 22 C 1.37856 * 120.00734 * 0.27404 * 20 19 18 23 23 C 1.39335 * 119.93532 * 0.02562 * 22 20 19 24 24 S 1.70653 * 124.22980 * 246.34174 * 15 14 4 25 25 H 1.08993 * 109.47395 * 309.14804 * 1 2 3 26 26 H 1.09001 * 109.47018 * 69.15670 * 1 2 3 27 27 H 1.09005 * 109.46393 * 189.15010 * 1 2 3 28 28 H 1.08994 * 109.47559 * 240.00110 * 2 1 3 29 29 H 1.09002 * 109.47159 * 171.71047 * 3 2 1 30 30 H 1.08999 * 109.47363 * 291.70645 * 3 2 1 31 31 H 1.08997 * 109.47525 * 51.71269 * 3 2 1 32 32 H 1.08997 * 109.46986 * 47.98188 * 5 4 2 33 33 H 1.08995 * 109.47274 * 167.98310 * 5 4 2 34 34 H 0.96996 * 120.00220 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47326 * 318.43792 * 14 4 2 36 36 H 1.08997 * 109.46858 * 198.43193 * 14 4 2 37 37 H 1.07998 * 119.77313 * 359.97438 * 18 17 16 38 38 H 1.08004 * 119.62538 * 179.72744 * 19 18 17 39 39 H 1.08003 * 120.02801 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 3.4414 -1.0370 1.0649 6 6 3.5940 -2.1609 0.0727 7 1 2.7319 -2.5280 -0.4644 8 6 4.8343 -2.7208 -0.1495 9 7 5.8841 -2.2742 0.5049 10 14 5.0234 -4.1144 -1.3788 11 1 4.5932 -3.6511 -2.7225 12 1 6.4460 -4.5374 -1.4326 13 1 4.1815 -5.2631 -0.9583 14 6 1.7853 0.1135 2.4051 15 6 0.3413 -0.0096 2.8185 16 7 -0.1968 -1.0904 3.2405 17 6 -1.5012 -1.0549 3.5754 18 6 -2.3323 -2.0823 4.0661 19 6 -3.6431 -1.8373 4.3418 20 6 -4.1836 -0.5703 4.1563 21 9 -5.4846 -0.3428 4.4404 22 6 -3.3922 0.4544 3.6829 23 6 -2.0506 0.2184 3.3902 24 16 -0.7808 1.2756 2.7815 25 1 -0.3634 0.6487 0.7969 26 1 -0.3633 0.3657 -0.9604 27 1 -0.3632 -1.0147 0.1634 28 1 1.8934 -0.5138 -0.8899 29 1 3.1198 1.4462 0.1482 30 1 1.8026 1.9118 -0.9548 31 1 1.5607 1.9974 0.8066 32 1 3.9949 -0.1657 0.7148 33 1 3.8323 -1.3511 2.0326 34 1 6.7566 -2.6683 0.3490 35 1 2.0151 1.1579 2.1944 36 1 2.4257 -0.2441 3.2113 37 1 -1.9278 -3.0717 4.2202 38 1 -4.2688 -2.6355 4.7131 39 1 -3.8118 1.4391 3.5390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519861183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:01 Heat of formation + Delta-G solvation = 7.098307 kcal Electronic energy + Delta-G solvation = -22804.868666 eV Core-core repulsion = 19367.204974 eV Total energy + Delta-G solvation = -3437.663692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.00702 -41.46352 -39.65840 -37.53243 -34.91799 -32.77172 -32.36100 -31.42768 -29.13766 -28.13610 -27.18415 -25.11720 -24.02298 -23.71571 -22.14769 -20.58087 -19.63423 -18.68848 -18.36681 -17.61608 -17.16072 -16.74620 -16.59242 -16.34220 -16.07679 -15.48359 -15.35052 -15.07032 -14.79487 -14.64504 -14.23628 -14.08817 -13.97237 -13.60280 -13.36543 -13.16272 -13.01728 -12.73667 -12.61027 -12.42263 -12.33134 -12.11755 -11.94490 -11.78541 -11.60502 -11.36348 -11.02614 -10.59199 -10.54829 -9.50222 -9.10069 -8.98321 -8.17544 -6.25893 -0.76179 -0.06358 0.10455 0.57916 1.17111 1.41062 1.43808 1.51510 2.40981 2.47390 2.84020 3.10869 3.13771 3.30194 3.47607 3.83769 3.98269 4.03276 4.06955 4.12733 4.33663 4.39569 4.46847 4.52827 4.72025 4.74716 4.78393 4.83373 4.92839 4.99102 5.02564 5.08697 5.15306 5.21874 5.38085 5.50495 5.60507 5.67697 6.07803 6.39070 6.56241 6.69991 6.87786 7.42271 8.92445 Molecular weight = 308.11amu Principal moments of inertia in cm(-1) A = 0.021691 B = 0.003592 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.558164 B = 7793.642796 C = 8411.342384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.175 4.175 4 N -0.528 5.528 5 C 0.211 3.789 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.274 1.274 14 C 0.112 3.888 15 C 0.109 3.891 16 N -0.475 5.475 17 C 0.051 3.949 18 C -0.042 4.042 19 C -0.127 4.127 20 C 0.112 3.888 21 F -0.130 7.130 22 C -0.106 4.106 23 C -0.180 4.180 24 S 0.150 5.850 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.068 0.932 32 H -0.018 1.018 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.154 0.846 38 H 0.177 0.823 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.438 8.355 6.286 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.233 4.233 4 N -0.252 5.252 5 C 0.085 3.915 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.199 1.199 14 C -0.020 4.020 15 C -0.177 4.177 16 N -0.188 5.188 17 C -0.070 4.070 18 C -0.063 4.063 19 C -0.148 4.148 20 C 0.089 3.911 21 F -0.109 7.109 22 C -0.129 4.129 23 C -0.300 4.300 24 S 0.408 5.592 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.086 0.914 32 H -0.001 1.001 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.194 0.806 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.077 8.476 6.110 21.751 hybrid contribution 0.549 -0.914 -0.269 1.100 sum -18.527 7.562 5.841 20.846 Atomic orbital electron populations 1.22279 0.94227 1.01186 1.02941 1.21683 0.95461 0.92917 0.93282 1.22356 1.00745 0.97125 1.03107 1.62082 1.20223 1.41926 1.00983 1.19410 0.82316 0.94121 0.95615 1.21367 0.93545 1.17971 1.22753 0.92690 1.25783 0.95486 0.99668 0.98278 1.70051 0.99896 1.43838 1.43444 0.85541 0.76961 0.79322 0.79408 1.19270 1.20728 1.19936 1.20888 0.87606 0.98620 0.94874 1.26739 1.01500 0.91276 0.98192 1.66142 1.10110 1.28424 1.14111 1.19680 0.89142 0.94368 1.03782 1.20497 0.91846 0.98384 0.95530 1.20946 0.95247 0.96679 1.01938 1.17449 0.78627 0.94354 1.00687 1.91530 1.33021 1.95252 1.91089 1.20336 0.90131 1.00888 1.01579 1.23797 0.99859 0.97731 1.08568 1.83508 0.99429 1.12993 1.63281 0.91251 0.90853 0.94701 0.91700 0.93855 0.90389 0.91367 1.00063 0.97677 0.92724 0.89950 0.89585 0.82865 0.80557 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 8.33 71.98 0.60 -4.06 16 2 C 0.08 2.78 2.78 44.92 0.12 2.91 16 3 C -0.17 -5.37 8.18 71.98 0.59 -4.79 16 4 N -0.53 -22.54 4.35 -880.09 -3.83 -26.37 16 5 C 0.21 11.00 4.64 85.56 0.40 11.39 16 6 C -0.52 -29.44 8.46 25.60 0.22 -29.22 16 7 H 0.05 3.13 7.49 -2.91 -0.02 3.11 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 10 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 14 C 0.11 3.97 5.33 85.56 0.46 4.42 16 15 C 0.11 3.50 4.88 88.68 0.43 3.93 16 16 N -0.47 -16.69 10.57 -182.50 -1.93 -18.61 16 17 C 0.05 1.47 7.00 39.77 0.28 1.75 16 18 C -0.04 -0.95 10.05 22.45 0.23 -0.73 16 19 C -0.13 -2.19 9.92 21.97 0.22 -1.97 16 20 C 0.11 2.07 7.30 22.36 0.16 2.23 16 21 F -0.13 -2.33 17.27 44.97 0.78 -1.55 16 22 C -0.11 -2.07 10.05 22.44 0.23 -1.84 16 23 C -0.18 -4.47 6.55 22.94 0.15 -4.32 16 24 S 0.15 3.62 20.40 -56.49 -1.15 2.47 16 25 H 0.07 1.96 3.49 -15.74 -0.05 1.90 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.06 2.77 6.98 -2.39 -0.02 2.75 16 29 H 0.04 1.51 6.57 -2.39 -0.02 1.50 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.78 6.39 -2.39 -0.02 1.76 16 32 H -0.02 -0.98 6.49 -2.39 -0.02 -1.00 16 33 H 0.01 0.29 7.66 -2.39 -0.02 0.27 16 34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.08 2.52 5.29 -2.39 -0.01 2.51 16 36 H 0.09 3.24 7.59 -2.39 -0.02 3.22 16 37 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 38 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -66.34 330.53 1.75 -64.60 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.03 Total: 7.51 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 4.54 Total: -19.49 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -5.48 Total: -100.32 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.15 Total: 2.47 kcal Total: -66.34 1.75 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519861183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.696 kcal (2) G-P(sol) polarization free energy of solvation -66.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds