Wall clock time and date at job start Tue Mar 31 2020 09:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34640 * 116.99519 * 2 1 4 4 O 1.21509 * 120.00750 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99732 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00066 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47195 * 180.02562 * 6 5 3 8 8 C 1.50691 * 109.47304 * 180.02562 * 7 6 5 9 9 O 1.21290 * 119.99983 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00340 * 180.02562 * 8 7 6 11 11 C 1.39924 * 120.00457 * 175.49244 * 10 8 7 12 12 C 1.38968 * 120.03773 * 214.84643 * 11 10 8 13 13 C 1.38155 * 120.06606 * 179.71324 * 12 11 10 14 14 C 1.38164 * 120.13851 * 0.56061 * 13 12 11 15 15 C 1.38908 * 120.07372 * 359.71168 * 14 13 12 16 16 O 1.35749 * 120.03567 * 179.97438 * 15 14 13 17 17 C 1.34836 * 117.00019 * 5.37193 * 16 15 14 18 18 H 1.07996 * 119.99803 * 354.96312 * 17 16 15 19 19 C 1.38652 * 120.00259 * 174.95934 * 17 16 15 20 20 N 1.31551 * 120.00068 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99598 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46944 * 90.00257 * 21 19 17 23 23 H 1.48509 * 109.46959 * 209.99784 * 21 19 17 24 24 H 1.48500 * 109.47452 * 329.99808 * 21 19 17 25 25 C 1.38714 * 120.03440 * 35.11293 * 11 10 8 26 26 H 1.09004 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47550 * 299.99476 * 1 2 3 28 28 H 1.09006 * 109.47613 * 59.99341 * 1 2 3 29 29 H 0.96999 * 119.99939 * 0.02562 * 5 3 2 30 30 H 1.09005 * 109.46997 * 60.00453 * 6 5 3 31 31 H 1.08999 * 109.47278 * 300.00347 * 6 5 3 32 32 H 1.08999 * 109.47142 * 300.00248 * 7 6 5 33 33 H 1.09005 * 109.46927 * 60.00228 * 7 6 5 34 34 H 0.97001 * 120.00157 * 355.48319 * 10 8 7 35 35 H 1.08000 * 119.95941 * 359.97438 * 12 11 10 36 36 H 1.07997 * 119.92938 * 180.25204 * 13 12 11 37 37 H 1.07999 * 119.96303 * 179.74652 * 14 13 12 38 38 H 0.97003 * 120.00091 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.07090 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5756 0.0011 7 6 5.5909 2.3752 0.0010 8 6 6.2751 3.7179 0.0022 9 8 5.6145 4.7351 0.0026 10 7 7.6210 3.7885 0.0018 11 6 8.2564 5.0316 -0.0923 12 6 9.4545 5.1496 -0.7864 13 6 10.0794 6.3779 -0.8848 14 6 9.5216 7.4900 -0.2839 15 6 8.3271 7.3775 0.4161 16 8 7.7800 8.4707 1.0065 17 6 8.3855 9.6545 0.7831 18 1 9.3100 9.6916 0.2261 19 6 7.8212 10.8244 1.2684 20 7 8.4116 11.9794 1.0500 21 14 6.2224 10.7601 2.2324 22 1 6.5221 10.5984 3.6779 23 1 5.4663 12.0208 2.0217 24 1 5.4077 9.6102 1.7641 25 6 7.6939 6.1464 0.5118 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.9374 0.4568 0.0005 30 1 3.7809 3.1324 0.8912 31 1 3.7815 3.1329 -0.8888 32 1 5.8839 1.8178 0.8907 33 1 5.8838 1.8186 -0.8893 34 1 8.1492 2.9776 0.0668 35 1 9.8953 4.2811 -1.2530 36 1 11.0083 6.4679 -1.4282 37 1 10.0146 8.4480 -0.3591 38 1 8.0166 12.7979 1.3891 39 1 6.7648 6.0565 1.0551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490983607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:40 Heat of formation + Delta-G solvation = -139.621226 kcal Electronic energy + Delta-G solvation = -23974.612340 eV Core-core repulsion = 20075.460751 eV Total energy + Delta-G solvation = -3899.151589 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72156 -41.42787 -40.46441 -38.44341 -37.84157 -36.37166 -35.55945 -34.45231 -32.49360 -31.21311 -30.05950 -28.41889 -27.25043 -25.53138 -23.74657 -22.83971 -22.45516 -21.51412 -19.96989 -19.85694 -19.33487 -18.38514 -17.75403 -17.65953 -17.18966 -16.97212 -16.79093 -16.27966 -15.82762 -15.79256 -15.52017 -15.22338 -15.10048 -14.78497 -14.33895 -14.29904 -14.21004 -14.07523 -13.28949 -13.08592 -12.99241 -12.91394 -12.76054 -12.54267 -12.49558 -12.06443 -11.89768 -11.83445 -11.51580 -11.29608 -10.88157 -10.81022 -10.36965 -9.39778 -8.92403 -8.52694 -6.24342 0.39192 0.65140 1.05151 1.26284 1.29926 1.48090 1.60048 1.65485 2.07244 2.25200 2.74309 3.06475 3.12023 3.28990 3.55575 3.92838 4.03988 4.12221 4.34269 4.35149 4.36593 4.39853 4.48710 4.64827 4.66478 4.72150 4.79670 4.83152 4.96875 5.11541 5.34160 5.35418 5.39068 5.44065 5.68585 5.78116 5.90961 6.22476 6.31425 6.48811 6.82520 7.19720 7.25030 7.59386 8.58747 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.002803 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.168332 B = 9987.477576 C =11689.163757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.369 6.369 3 C 0.639 3.361 4 O -0.614 6.614 5 N -0.687 5.687 6 C 0.151 3.849 7 C -0.127 4.127 8 C 0.506 3.494 9 O -0.569 6.569 10 N -0.649 5.649 11 C 0.182 3.818 12 C -0.191 4.191 13 C -0.054 4.054 14 C -0.250 4.250 15 C 0.130 3.870 16 O -0.250 6.250 17 C -0.397 4.397 18 H 0.088 0.912 19 C 0.014 3.986 20 N -0.919 5.919 21 Si 0.962 3.038 22 H -0.262 1.262 23 H -0.264 1.264 24 H -0.276 1.276 25 C -0.205 4.205 26 H 0.141 0.859 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.428 0.572 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.436 0.564 35 H 0.170 0.830 36 H 0.155 0.845 37 H 0.112 0.888 38 H 0.285 0.715 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 -31.903 -3.358 32.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.282 6.282 3 C 0.392 3.608 4 O -0.506 6.506 5 N -0.349 5.349 6 C 0.027 3.973 7 C -0.167 4.167 8 C 0.295 3.705 9 O -0.446 6.446 10 N -0.297 5.297 11 C 0.087 3.913 12 C -0.212 4.212 13 C -0.073 4.073 14 C -0.270 4.270 15 C 0.080 3.920 16 O -0.158 6.158 17 C -0.473 4.473 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.785 3.215 22 H -0.187 1.187 23 H -0.188 1.188 24 H -0.201 1.201 25 C -0.227 4.227 26 H 0.159 0.841 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.267 0.733 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.277 0.723 35 H 0.187 0.813 36 H 0.173 0.827 37 H 0.129 0.871 38 H 0.095 0.905 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.050 -30.559 -3.190 31.315 hybrid contribution -0.288 0.625 0.438 0.815 sum -6.338 -29.934 -2.753 30.721 Atomic orbital electron populations 1.23512 0.72873 1.05763 1.02407 1.86240 1.25674 1.29538 1.86735 1.18424 0.84117 0.82194 0.76092 1.91034 1.65788 1.36634 1.57131 1.44330 1.02265 1.10934 1.77322 1.20880 0.91470 0.82425 1.02505 1.21723 0.91882 0.93282 1.09788 1.21384 0.82067 0.92424 0.74664 1.90854 1.65448 1.39264 1.49043 1.43237 1.06590 1.07517 1.72332 1.17300 0.93370 0.85036 0.95600 1.20960 0.96573 0.99204 1.04413 1.21038 0.99400 0.90865 0.95969 1.21360 0.98061 1.01047 1.06505 1.19441 0.92684 0.87387 0.92439 1.83533 1.52818 1.14524 1.64934 1.20761 1.07959 0.81639 1.36944 0.89431 1.25162 1.01916 0.93210 0.98177 1.69706 1.41472 0.98293 1.46506 0.85345 0.78920 0.77941 0.79277 1.18711 1.18811 1.20117 1.20261 1.02895 0.91069 1.08447 0.84142 0.92385 0.92322 0.73347 0.92683 0.92492 0.83409 0.83159 0.72309 0.81268 0.82731 0.87061 0.90540 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.56 113.37 1.20 1.77 16 2 O -0.37 -6.04 10.62 -55.49 -0.59 -6.63 16 3 C 0.64 13.81 8.75 129.79 1.14 14.95 16 4 O -0.61 -19.34 16.13 19.81 0.32 -19.02 16 5 N -0.69 -9.61 5.56 -590.84 -3.29 -12.89 16 6 C 0.15 2.74 4.96 86.38 0.43 3.17 16 7 C -0.13 -1.17 5.82 29.85 0.17 -1.00 16 8 C 0.51 11.32 7.67 87.65 0.67 11.99 16 9 O -0.57 -20.81 13.42 -3.06 -0.04 -20.85 16 10 N -0.65 -12.60 5.34 -303.56 -1.62 -14.22 16 11 C 0.18 5.60 6.30 38.14 0.24 5.84 16 12 C -0.19 -4.99 9.96 22.43 0.22 -4.77 16 13 C -0.05 -1.72 10.03 22.23 0.22 -1.50 16 14 C -0.25 -11.03 9.17 22.41 0.21 -10.82 16 15 C 0.13 6.52 6.64 22.56 0.15 6.67 16 16 O -0.25 -14.72 8.58 -22.79 -0.20 -14.91 16 17 C -0.40 -24.43 9.95 67.92 0.68 -23.75 16 18 H 0.09 5.52 5.43 -2.91 -0.02 5.50 16 19 C 0.01 0.85 5.49 84.83 0.47 1.32 16 20 N -0.92 -56.41 13.96 21.61 0.30 -56.11 16 21 Si 0.96 48.82 28.62 68.60 1.96 50.78 16 22 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 24 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 25 C -0.21 -8.90 8.64 22.51 0.19 -8.70 16 26 H 0.14 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.43 2.19 8.58 -92.71 -0.80 1.39 16 30 H 0.05 1.34 8.10 -2.38 -0.02 1.32 16 31 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 32 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.15 0.19 8.14 -2.38 -0.02 0.17 16 34 H 0.44 3.48 8.82 -92.71 -0.82 2.66 16 35 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.11 5.36 5.63 -2.91 -0.02 5.34 16 38 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 39 H 0.11 5.33 6.23 -2.91 -0.02 5.31 16 Total: -1.00 -91.82 343.51 2.34 -89.47 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -0.50 Total: 9.22 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.99 Total: -4.84 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -4.60 Total: -83.23 kcal Atomic # 8 Polarization: -60.90 SS G_CDS: -0.51 Total: -61.40 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 1.96 Total: 50.78 kcal Total: -91.82 2.34 -89.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490983607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.149 kcal (2) G-P(sol) polarization free energy of solvation -91.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds