Wall clock time and date at job start Tue Mar 31 2020 10:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38200 * 119.94443 * 2 1 4 4 C 1.38786 * 119.95220 * 180.02562 * 3 2 1 5 5 N 1.39846 * 120.08184 * 180.02562 * 4 3 2 6 6 C 1.46850 * 110.99817 * 295.78793 * 5 4 3 7 7 C 1.53029 * 109.52324 * 185.83945 * 6 5 4 8 8 C 1.53122 * 109.28046 * 300.81900 * 7 6 5 9 9 C 1.53112 * 109.15870 * 57.65329 * 8 7 6 10 10 H 1.08998 * 109.50469 * 62.32952 * 9 8 7 11 11 C 1.50704 * 109.50375 * 182.40793 * 9 8 7 12 12 H 1.08000 * 120.00353 * 119.99921 * 11 9 8 13 13 C 1.37878 * 119.99742 * 299.99906 * 11 9 8 14 14 N 1.31510 * 120.00111 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99821 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46702 * 90.00623 * 15 13 11 17 17 H 1.48504 * 109.46958 * 210.00250 * 15 13 11 18 18 H 1.48494 * 109.47277 * 330.00409 * 15 13 11 19 19 C 1.46848 * 111.00227 * 59.99185 * 5 4 3 20 20 C 1.39118 * 119.83829 * 0.27226 * 4 3 2 21 21 F 1.35099 * 120.05465 * 179.72771 * 20 4 3 22 22 C 1.38238 * 119.88835 * 359.42361 * 20 4 3 23 23 C 1.38227 * 119.94808 * 179.97438 * 2 1 3 24 24 N 1.48010 * 119.91832 * 359.97438 * 23 2 1 25 25 O 1.21802 * 119.99694 * 216.86954 * 24 23 2 26 26 O 1.21795 * 120.00046 * 36.86084 * 24 23 2 27 27 H 1.08999 * 109.46977 * 95.71295 * 1 2 3 28 28 H 1.09000 * 109.47172 * 215.71039 * 1 2 3 29 29 H 1.08999 * 109.47173 * 335.71411 * 1 2 3 30 30 H 1.07999 * 120.02051 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.46509 * 65.82290 * 6 5 4 32 32 H 1.09003 * 109.45959 * 305.85622 * 6 5 4 33 33 H 1.08999 * 109.50397 * 180.88156 * 7 6 5 34 34 H 1.08996 * 109.51003 * 60.76211 * 7 6 5 35 35 H 1.08992 * 109.52591 * 177.56148 * 8 7 6 36 36 H 1.08998 * 109.51983 * 297.68774 * 8 7 6 37 37 H 0.97005 * 120.00225 * 179.97438 * 14 13 11 38 38 H 1.09005 * 109.45737 * 54.14719 * 19 5 4 39 39 H 1.09003 * 109.46576 * 294.18406 * 19 5 4 40 40 H 1.08003 * 119.97395 * 180.26896 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1975 0.0000 4 6 3.5847 1.1977 -0.0005 5 7 4.2854 2.4079 0.0000 6 6 4.0325 3.1630 -1.2338 7 6 4.9238 4.4066 -1.2641 8 6 4.6207 5.2758 -0.0405 9 6 4.8453 4.4511 1.2298 10 1 5.8913 4.1502 1.2881 11 6 4.4924 5.2808 2.4373 12 1 3.7142 4.9517 3.1100 13 6 5.1631 6.4600 2.6834 14 7 6.1105 6.8610 1.8641 15 14 4.7252 7.4889 4.1798 16 1 5.5580 7.0639 5.3335 17 1 4.9799 8.9223 3.8868 18 1 3.2897 7.2984 4.5087 19 6 3.9563 3.2061 1.1878 20 6 4.2770 -0.0089 -0.0068 21 9 5.6280 -0.0138 -0.0129 22 6 3.5803 -1.2029 -0.0004 23 6 2.1970 -1.1977 0.0005 24 7 1.4540 -2.4778 0.0017 25 8 1.8784 -3.4277 0.6351 26 8 0.4181 -2.5812 -0.6306 27 1 -0.3633 -0.1023 -1.0226 28 1 -0.3633 -0.8344 0.5998 29 1 -0.3633 0.9367 0.4227 30 1 1.6562 2.1325 -0.0004 31 1 2.9858 3.4654 -1.2665 32 1 4.2560 2.5349 -2.0962 33 1 4.7246 4.9750 -2.1726 34 1 5.9709 4.1045 -1.2455 35 1 5.2835 6.1410 -0.0351 36 1 3.5843 5.6111 -0.0797 37 1 6.5821 7.6908 2.0370 38 1 4.1244 2.6093 2.0844 39 1 2.9099 3.5083 1.1439 40 1 4.1165 -2.1405 -0.0009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596325708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:55 Heat of formation + Delta-G solvation = -35.434864 kcal Electronic energy + Delta-G solvation = -25619.409752 eV Core-core repulsion = 21737.148812 eV Total energy + Delta-G solvation = -3882.260940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.09079 -43.42107 -41.38213 -39.31725 -37.76627 -35.93456 -34.10064 -33.67237 -31.81824 -31.32778 -28.57332 -27.16699 -26.97365 -24.98352 -23.91591 -23.30387 -22.44210 -20.68005 -20.26520 -19.89943 -18.94377 -18.77162 -17.74796 -17.56836 -17.13468 -16.95558 -16.54482 -15.78191 -15.74088 -15.35736 -15.00651 -14.89992 -14.55465 -14.31629 -14.27046 -13.86691 -13.46648 -13.41941 -13.14386 -12.98360 -12.88717 -12.74644 -12.69088 -12.58050 -12.31155 -12.15105 -11.92935 -11.83456 -11.46286 -11.03865 -10.79778 -10.55279 -10.40390 -10.02058 -9.61314 -8.10166 -6.24372 -1.29208 -0.39078 -0.09560 0.17081 1.41254 1.43103 1.51765 1.83174 2.37034 2.52130 2.83298 3.13750 3.18101 3.29442 3.49677 3.87441 3.89072 4.12762 4.14232 4.17083 4.28227 4.43717 4.47626 4.56435 4.58087 4.66583 4.79558 4.80869 4.87287 4.93846 4.97991 5.02778 5.08916 5.27696 5.30426 5.47477 5.62287 5.76733 6.00067 6.14542 6.15830 6.36217 6.41469 6.87502 7.44230 8.94399 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.020898 B = 0.003529 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.503752 B = 7931.281878 C = 8274.318853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.010 4.010 3 C -0.116 4.116 4 C 0.117 3.883 5 N -0.523 5.523 6 C 0.071 3.929 7 C -0.111 4.111 8 C -0.105 4.105 9 C 0.053 3.947 10 H -0.006 1.006 11 C -0.536 4.536 12 H 0.055 0.945 13 C 0.017 3.983 14 N -0.914 5.914 15 Si 0.951 3.049 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.087 3.913 20 C 0.109 3.891 21 F -0.123 7.123 22 C -0.083 4.083 23 C -0.035 4.035 24 N 0.031 4.969 25 O -0.184 6.184 26 O -0.133 6.133 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.171 0.829 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 -12.232 -7.375 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.013 4.013 3 C -0.136 4.136 4 C 0.021 3.979 5 N -0.245 5.245 6 C -0.055 4.055 7 C -0.149 4.149 8 C -0.143 4.143 9 C 0.034 3.966 10 H 0.013 0.987 11 C -0.574 4.574 12 H 0.073 0.927 13 C -0.182 4.182 14 N -0.553 5.553 15 Si 0.777 3.223 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.038 4.038 20 C 0.087 3.913 21 F -0.101 7.101 22 C -0.103 4.103 23 C -0.118 4.118 24 N 0.552 4.448 25 O -0.394 6.394 26 O -0.357 6.357 27 H 0.128 0.872 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.188 0.812 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.035 -11.563 -7.347 16.410 hybrid contribution -0.174 0.529 0.980 1.127 sum -9.208 -11.034 -6.367 15.719 Atomic orbital electron populations 1.21154 0.86582 1.04896 1.05482 1.19900 0.99140 0.89095 0.93127 1.21715 0.92804 0.98841 1.00243 1.19469 0.91550 0.91430 0.95480 1.59651 1.56606 1.03258 1.04950 1.22192 0.98966 0.94601 0.89696 1.21599 0.99146 0.95364 0.98757 1.21478 0.99366 0.99410 0.94044 1.18592 0.93611 0.90527 0.93865 0.98746 1.21461 1.19799 1.06503 1.09646 0.92703 1.25667 0.94832 0.98745 0.98951 1.70022 1.24222 1.23059 1.37991 0.85658 0.78822 0.77901 0.79875 1.20598 1.20995 1.19013 1.22149 0.98301 0.94099 0.89295 1.17228 0.77689 0.92044 1.04308 1.91556 1.27847 1.97087 1.93601 1.20706 0.91563 0.99508 0.98494 1.20540 0.91550 0.83315 1.16400 1.43547 1.00529 1.02467 0.98299 1.94581 1.72016 1.30676 1.42152 1.94511 1.11710 1.89399 1.40114 0.87179 0.91216 0.88110 0.81177 0.92664 0.89617 0.90190 0.93375 0.92245 0.94672 0.93049 0.92800 0.93736 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.62 71.23 0.61 -1.16 16 2 C -0.01 -0.20 5.87 -19.88 -0.12 -0.31 16 3 C -0.12 -2.41 8.33 22.39 0.19 -2.23 16 4 C 0.12 3.10 4.69 38.21 0.18 3.28 16 5 N -0.52 -16.88 4.46 -695.13 -3.10 -19.98 16 6 C 0.07 2.00 5.17 86.32 0.45 2.45 16 7 C -0.11 -3.78 6.09 30.64 0.19 -3.59 16 8 C -0.10 -4.56 5.02 30.67 0.15 -4.41 16 9 C 0.05 2.51 2.26 -11.49 -0.03 2.48 16 10 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 11 C -0.54 -28.01 8.56 25.60 0.22 -27.79 16 12 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 13 C 0.02 0.92 5.30 84.66 0.45 1.37 16 14 N -0.91 -51.20 11.35 21.45 0.24 -50.95 16 15 Si 0.95 42.04 29.54 68.60 2.03 44.06 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 C 0.09 3.28 4.34 86.32 0.37 3.65 16 20 C 0.11 2.85 7.31 22.48 0.16 3.01 16 21 F -0.12 -3.70 17.08 44.97 0.77 -2.93 16 22 C -0.08 -1.84 9.63 22.29 0.21 -1.62 16 23 C -0.04 -0.78 6.49 36.40 0.24 -0.55 16 24 N 0.03 0.74 4.14 -46.42 -0.19 0.54 16 25 O -0.18 -4.88 18.93 18.88 0.36 -4.52 16 26 O -0.13 -3.12 16.73 18.89 0.32 -2.80 16 27 H 0.11 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.07 1.10 6.90 -2.39 -0.02 1.09 16 29 H 0.10 1.08 8.05 -2.39 -0.02 1.06 16 30 H 0.17 3.03 7.13 -2.91 -0.02 3.00 16 31 H 0.06 1.37 7.56 -2.38 -0.02 1.36 16 32 H 0.09 2.10 8.11 -2.39 -0.02 2.08 16 33 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 3.02 6.15 -2.39 -0.01 3.00 16 36 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 38 H 0.05 2.11 8.11 -2.38 -0.02 2.09 16 39 H 0.04 1.55 7.34 -2.39 -0.02 1.53 16 40 H 0.17 3.29 8.00 -2.91 -0.02 3.27 16 Total: -1.00 -59.68 335.33 4.76 -54.92 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.06 Total: 7.08 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.28 Total: -25.42 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -3.05 Total: -70.39 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.67 Total: -7.33 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.77 Total: -2.93 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -59.68 4.76 -54.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.484 kcal (2) G-P(sol) polarization free energy of solvation -59.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds